BAC Information

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BAC

Clone NameB6Ng01-113P04
Chromosome17 (Build37)
Map Location 46,973,644 - 47,189,987
singlet/doubletdoublet
Overlap geneBC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113P04.bB6Ng01-113P04.g
ACCDH919600DH919601
length752738
definitionDH919600|Mus musculus domesticus DNA, BAC clone: B6Ng01-113P04, 5' end.DH919601|Mus musculus domesticus DNA, BAC clone: B6Ng01-113P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,189,237 - 47,189,987)(46,973,644 - 46,974,380)
sequence
gaattccaggatagccagagctaatagtgagaccctgtttatagatagat
agatagatagatagatagatagatagatagatagatagatagataattga
tagatagatagatagatagatagataattgatagatagatagatagatag
atagatagatagatagatagatagatagacagacagacagcaggttctag
agtttggttgcctggattcaaatgctttctttttcagctcttttctttcc
tttctccagctgttcattttcatctgaaaataggaaccatagtgaggtct
acagggtaagattgccacaaggaccccttttgcgtgcccaacaggtttag
cagagcttctgagttagagtggccattcccagaataccttctgtaattat
attgccttctccaaaaagcttcggccaatgttgattcattgagggtaaaa
aatcaagtcccctggtgttctcataggatctatctaactcttacataaaa
gtttttaaatggtagtgcatgctgggtttcccaatttgcctgcactatga
gcaatttctcctggggactaagggttatcattccctcaaacaggttctgt
ctgcctagtggtcaagagactaaattgacagcctttaaccctgtgagaga
actgagctcattgacctggggatagcaagtttgacaaaatttgtccttta
attaaagggatagtgagtgctcaaatgcatgtgtgtgcatgactgagtgc
ta
gaattcactatgtagatcaggctggttttgaactcgcagagatctgctta
tttctgcttctagagtggtaggattaaaggcatgcactaccatgcctgcc
tgcttttaaattgtgtttgtctgtttttgcctttttgagacatggtttct
ctgtggaactctggctgttctggaattcactgtgaagaccaggctggcct
cggactcagacatcctcctgcctctgcctctgcttctgcctcctgagttc
tgggtgggactaaagttgtacactgccacaccttgctctgctttcacatt
taaaactacatgtgtgttggtggtggcccacgcctttaatcccagcattt
gggaggcagagacaggctgatttctgagttcgaggctagcctggtctaca
gagtgagttccaggacagccagggctacacagagaaaccctgtcttggaa
aaacaaaaacaaaaacaaaaaacaaaaaaataataaacataacaaaacaa
aacaaaaaaaactgcatgtgtgcctgatgtctctagaaactcgtgggcgg
agcacactgtggaggtagaggatgcctctggaccggagctcatccctccc
tcccataagtaggttcagacatcagtctcaggtcctcaggcttacactgg
gggatcaagaggcacctttacctactgaggcattttgcaccactttttgg
acaggatctggggtaaactaactggcctggaattggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47189237_47189987
seq2: B6Ng01-113P04.b_49_800 (reverse)

seq1  TAGCACTCAGTCATGCACACACATGCATTTGAGCACTCACTATCCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCAGTCATGCACACACATGCATTTGAGCACTCACTATCCCTTTA  50

seq1  ATTAAAGGACAAATTTTGTCAAACTTGCTAT-CCCAGGTCAATGAGCTCA  99
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTAAAGGACAAATTTTGTCAAACTTGCTATCCCCAGGTCAATGAGCTCA  100

seq1  GTTCTCTCACAGGGTTAAAGGCTGTCAATTTAGTCTCTTGACCACTAGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCACAGGGTTAAAGGCTGTCAATTTAGTCTCTTGACCACTAGGC  150

seq1  AGACAGAACCTGTTTGAGGGAATGATAACCCTTAGTCCCCAGGAGAAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAACCTGTTTGAGGGAATGATAACCCTTAGTCCCCAGGAGAAATT  200

seq1  GCTCATAGTGCAGGCAAATTGGGAAACCCAGCATGCACTACCATTTAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGTGCAGGCAAATTGGGAAACCCAGCATGCACTACCATTTAAAA  250

seq1  ACTTTTATGTAAGAGTTAGATAGATCCTATGAGAACACCAGGGGACTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTAAGAGTTAGATAGATCCTATGAGAACACCAGGGGACTTGA  300

seq1  TTTTTTACCCTCAATGAATCAACATTGGCCGAAGCTTTTTGGAGAAGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACCCTCAATGAATCAACATTGGCCGAAGCTTTTTGGAGAAGGCA  350

seq1  ATATAATTACAGAAGGTATTCTGGGAATGGCCACTCTAACTCAGAAGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTACAGAAGGTATTCTGGGAATGGCCACTCTAACTCAGAAGCTC  400

seq1  TGCTAAACCTGTTGGGCACGCAAAAGGGGTCCTTGTGGCAATCTTACCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACCTGTTGGGCACGCAAAAGGGGTCCTTGTGGCAATCTTACCCT  450

seq1  GTAGACCTCACTATGGTTCCTATTTTCAGATGAAAATGAACAGCTGGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCTCACTATGGTTCCTATTTTCAGATGAAAATGAACAGCTGGAGA  500

seq1  AAGGAAAGAAAAGAGCTGAAAAAGAAAGCATTTGAATCCAGGCAACCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGAAAAGAGCTGAAAAAGAAAGCATTTGAATCCAGGCAACCAAA  550

seq1  CTCTAGAACCTGCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAACCTGCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCT  600

seq1  ATCTATCTATCTATCTATCTATCAATTATCTATCTATCTATCTATCTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCAATTATCTATCTATCTATCTATCTATC  650

seq1  TATCAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  700

seq1  CTATCTATCTATAAACAGGGTCTCACTATTAGCTCTGGCTATCCTGGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATAAACAGGGTCTCACTATTAGCTCTGGCTATCCTGGAAT  750

seq1  TC  751
      ||
seq2  TC  752

seq1: chr17_46973644_46974380
seq2: B6Ng01-113P04.g_69_806

seq1  GAATTCACTATGTAGATCAGGCTGGTTTTGAACTCGCAGAGATCTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCTGGTTTTGAACTCGCAGAGATCTGCTTA  50

seq1  TTTCTGCTTCTAGAGTGGTAGGATTAAAGGCATGCACTACCATGCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTCTAGAGTGGTAGGATTAAAGGCATGCACTACCATGCCTGCC  100

seq1  TGCTTTTAAATTGTGTTTGTCTGTTTTTGCCTTTTTGAGACATGGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAAATTGTGTTTGTCTGTTTTTGCCTTTTTGAGACATGGTTTCT  150

seq1  CTGTGGAACTCTGGCTGTTCTGGAATTCACTGTGAAGACCAGGCTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAACTCTGGCTGTTCTGGAATTCACTGTGAAGACCAGGCTGGCCT  200

seq1  CGGACTCAGACATCCTCCTGCCTCTGCCTCTGCTTCTGCCTCCTGAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTCAGACATCCTCCTGCCTCTGCCTCTGCTTCTGCCTCCTGAGTTC  250

seq1  TGGGTGGGACTAAAGTTGTACACTGCCACACCTTGCTCTGCTTTCACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGACTAAAGTTGTACACTGCCACACCTTGCTCTGCTTTCACATT  300

seq1  TAAAACTACATGTGTGTTGGTGGTGGCCCACGCCTTTAATCCCAGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTACATGTGTGTTGGTGGTGGCCCACGCCTTTAATCCCAGCATTT  350

seq1  GGGAGGCAGAGACAGGCTGATTTCTGAGTTCGAGGCTAGCCTGGTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGACAGGCTGATTTCTGAGTTCGAGGCTAGCCTGGTCTACA  400

seq1  GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAA  450

seq1  AAACAAAAACAAAAACAAAAAACAAAAAAAGAAAAAACAAAACAAAACAA  500
      |||||||||||||||||||||||||||||| || ||||| ||||||||||
seq2  AAACAAAAACAAAAACAAAAAACAAAAAAATAATAAACATAACAAAACAA  500

seq1  AACAAAAAAAACTGCATGTGTGCCTGATGTCTCTAGAAACTCGTGGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAAACTGCATGTGTGCCTGATGTCTCTAGAAACTCGTGGGCGG  550

seq1  AGCACACTGTGGAGGTAGAGGATGCCTCTGGACCGGAGCTCATCCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTGTGGAGGTAGAGGATGCCTCTGGACCGGAGCTCATCCCTCCC  600

seq1  TCCCATAAGTAGGTTCAGACATCAGTCTCAGGTCCTCAGGCTTACACT-G  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCATAAGTAGGTTCAGACATCAGTCTCAGGTCCTCAGGCTTACACTGG  650

seq1  GGGATCAAGAGGCACCTTTACCTACTGAGGCATTTTGCACC-CCTTTTGG  698
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  GGGATCAAGAGGCACCTTTACCTACTGAGGCATTTTGCACCACTTTTTGG  700

seq1  ACAGGATCTGGGGTAAACTAGACTGGCCTGGAATTGGCT  737
      |||||||||||||||||||| ||||||||||||||||||
seq2  ACAGGATCTGGGGTAAACTA-ACTGGCCTGGAATTGGCT  738