BAC Information

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BAC

Clone NameB6Ng01-114A08
Chromosome17 (Build37)
Map Location 90,476,002 - 90,476,842
singlet/doubletsinglet
Overlap geneNrxn1
Upstream geneFshr, LOC100043904, LOC100043906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114A08.bB6Ng01-114A08.g
ACCDH919652DH919653
length8431,061
definitionDH919652|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A08, 5' end.DH919653|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgagtctaaaccacatgctatttgaagtaatcattggtttat
tgtccttatagttttgagtatttgaccctgacttgaggtatagatattgt
cacaggacatattattgctaatggtaccattttaaagccctgtttcccta
atgtatccactatataaataagattaaggcataaaagacaggagaaaaaa
attaacaacaaaattgtatacttgatttgaaagaaaaattggaatatagc
aaatgaaataaaactgaaaaaaaggaacaaaaaccattacagaaaaaaac
cattacagaaaaaaaccattacagaactgtcaaaattaacttcccaggct
ttatttctgacttctagcctctggcttttgttatatcatgtaatttgact
ctgtaatcttaacattccttagaatctgactcagctaataattatgatgt
tatcaatatgttttctttcaatgtcacagaattcagtggagtcttctgac
ctccatcgttaagtctaaaataagagctggtgagttagcaactttgtaac
tagttcataatttgattccttaatggcagggatgggacagaaaaaaaaag
agatgtcactagctgacatctgaaaaaagcaagaccaagcaagcagagat
gataagccttaattgcagaaggttggggacttgtagggggaagggagtgt
ctgtgtgttgggaagtatctgtgtgttgtttggatggcagcaaggtatcc
tggtctaccttatcagtgagccgatattagaacgtttttcttatttaggg
gagttgaattagtatttcacccaatgagtatgcaagctaaatt
gaattcctgatatttctgagactattatcatgaagggatgttgaaattta
tcaaagctcagcatttaatgaaatgatcattttttctttgagtttgttta
tgtagtagattatgttgatggatttcgatatattcaatcatcactgtagc
cctgggatgaagcctacttgattttggggaacgatggttttaatgttttc
ttcaattcagtttgtgagaattttattgaatattattgcatagattcata
agggaaattggtctgaagttctctttattctttgggtctttgtgcagttt
gtataagtataattgtggcttcatagaatgatttaagtagtgctccttct
gtttctattttgtggaatagttttaagagtattggtattaggacttcttg
gaaggcctgatagaattctgcactaaatccttttttcattgggagaaatt
taatgactacttctatttctttaggggttatgggactctttggatggttt
atctgatcctgatttaactttggcacctggcatctgtccagaaaattgtc
catttcattcaagtttttcagttttgttgagtataggcttttgtaggagg
atctgaagatttttatgaatttcctttgtttctgttgttatgtttcactt
tttattgcttgttttatttggatactgtgtttgtgcactctgcttagtct
ggttaatagtttctctatcttgttgattttctcaaagaaccagttcctgg
tctggttgatactttgtatagttcttttttgtttctactgcgttgttggt
tttcatctgtgagtttgatatttcctgccatctacactcttgggctttat
ttgattcttcttgttctagagctttcaggtgtgcttgtcagctgctagtg
tatgctctcaccagttgaaaaagaagattacagctatggagttttctctt
agcaccagccttcattatgtcccatagtttgggattgctgtggctcgttt
cataaattctgaaagtttaatccttggctattcctcctgaacagtttaca
tgtgttcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90476002_90476842
seq2: B6Ng01-114A08.b_44_886

seq1  GAATTCATTGAGTCTAAACCACATGCTATTTGAAGTAATCATTGGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGTCTAAACCACATGCTATTTGAAGTAATCATTGGTTTAT  50

seq1  TGTCCTTATAGTTTTGAGTATTTGACCCTGACTTGAGGTATAGATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTATAGTTTTGAGTATTTGACCCTGACTTGAGGTATAGATATTGT  100

seq1  CACAGGACATATTATTGCTAATGGTACCATTTTAAAGCCCTGTTTCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACATATTATTGCTAATGGTACCATTTTAAAGCCCTGTTTCCCTA  150

seq1  ATGTATCCACTATATAAATAAGATTAAGGCATAAAAGACAGGAGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCCACTATATAAATAAGATTAAGGCATAAAAGACAGGAGAAAAAA  200

seq1  ATTAACAACAAAATTGTATACTTGATTTGAAAGAAAAATTGGAATATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAACAAAATTGTATACTTGATTTGAAAGAAAAATTGGAATATAGC  250

seq1  AAATGAAATAAAACTGAAAAAAAGGAACAAAAACCATTACAGAAAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATAAAACTGAAAAAAAGGAACAAAAACCATTACAGAAAAAAAC  300

seq1  CATTACAGAAAAAAACCATTACAGAACTGTCAAAATTAACTTCCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGAAAAAAACCATTACAGAACTGTCAAAATTAACTTCCCAGGCT  350

seq1  TTATTTCTGACTTCTAGCCTCTGGCTTTTGTTATATCATGTAATTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGACTTCTAGCCTCTGGCTTTTGTTATATCATGTAATTTGACT  400

seq1  CTGTAATCTTAACATTCCTTAGAATCTGACTCAGCTAATAATTATGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTTAACATTCCTTAGAATCTGACTCAGCTAATAATTATGATGT  450

seq1  TATCAATATGTTTTCTTTCAATGTCACAGAATTCAGTGGAGTCTTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATATGTTTTCTTTCAATGTCACAGAATTCAGTGGAGTCTTCTGAC  500

seq1  CTCCATCGTTAAGTCTAAAATAAGAGCTGGTGAGTTAGCAACTTTGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCGTTAAGTCTAAAATAAGAGCTGGTGAGTTAGCAACTTTGTAAC  550

seq1  TAGTTCATAATTTGATTCCTTAATGGCAGGGATGGGACAGAAAAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATAATTTGATTCCTTAATGGCAGGGATGGGACAGAAAAAAAAAG  600

seq1  AGATGTCACTAGCTGACATCTGAAAAAAGCAAGACCAAGCAAGCAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCACTAGCTGACATCTGAAAAAAGCAAGACCAAGCAAGCAGAGAT  650

seq1  GATAAGCCTTAATTGCAGAAGGTTGGGGACTTGTAGGGGGAAGGGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCCTTAATTGCAGAAGGTTGGGGACTTGTAGGGGGAAGGGAGTGT  700

seq1  CTGTGTGTTGGGAAGTATCTGTGTGTTGTTTGGATGGCAGCAGGGTATCC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTGTGTTGGGAAGTATCTGTGTGTTGTTTGGATGGCAGCAAGGTATCC  750

seq1  TGGTCTACCTTATCAGTGAGCCGATATTAGAACG-TTTTCAGAATTAGGG  799
      |||||||||||||||||||||||||||||||||| |||||  | ||||||
seq2  TGGTCTACCTTATCAGTGAGCCGATATTAGAACGTTTTTCTTATTTAGGG  800

seq1  GAGTAGAATTAGTATTTCACCCAATGAG-ATGCGAGCTAAATT  841
      |||| ||||||||||||||||||||||| |||| |||||||||
seq2  GAGTTGAATTAGTATTTCACCCAATGAGTATGCAAGCTAAATT  843