BAC Information

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BAC

Clone NameB6Ng01-114F12
Chromosome17 (Build37)
Map Location 63,412,751 - 63,529,816
singlet/doubletdoublet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114F12.bB6Ng01-114F12.g
ACCDH919885DH919886
length1,1521,124
definitionDH919885|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F12, 5' end.DH919886|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,528,664 - 63,529,816)(63,412,751 - 63,414,166)
sequence
gaattcaaaatcatggtaataaattatataaatcatatttgagaaataga
gaacaaattcaaggttatattgtgagcaaagtctatgcaggcagcacaca
cactttgagagcagacatgaccggaaatggactgtggacttgaggtgggt
gggaacagtggtacctgttggagcacaaggaggctttctgagtagttttg
ctctgcagtaggtgtgtctaggtcctgtggcaagatctgtagaaaactaa
gataaggcacgtcctggacagtctccaggcccaaaggtctagccacaagc
tattgagagatgcaaccaaatgagcacactgtgagccattgtccagagag
taagaggcacagggcagtcagagcttgctagctttcggccaagtgtgctg
taaaactcatgtgatactaggatttagggaatcattcattgttatgtttg
agattgtataagtttttattaaactatttgatgagtttccacactttaag
aggaagaatctaaaaattagtaaaaagtcagtaaagaaatgtaaaatgtt
tttggaatgtaaaaggtcatatggggaaaggttttgaaaaggggaaggtg
aagagccaatctaagactattaatggtgactatatgctatgttactgttc
cagcattgaccagttctccattgacacaatctagaaatgggagaagaggg
gtgaaatagcaaagaacttgttttatgttaaagggacctcctgattatac
aatactgttttctacatctaaatctttgaaggtgctcaggataggatgga
caggcacctggctggaaggcataacagctgacctgctgaaatcagaaaac
ttctcttggattaacagtcctccccgttttacaggctagtttagcctgct
tcctcctcagaaatttataggatccatattatgatagtttaggcaaggac
tttgacctttcaacacaaaacatgcatgctgtcttcttgcttctccaaat
gcccactgttcctgcattttcttcacccagcaaatgccttttagtacctg
gttctgtacagcggtgcggggacaatgaacaggaatgaaattcctttgtc
ttcctttttctcttaaatttcctggcacctcccctgtgttaggcagccag
ct
gaattctctggctttcccaggatatgggtaagagtgagtaacaagctggc
tctgagcagctgcatatgaaatggtaaccgtggtccgcagtgaggacaca
tgccttataagcaatacttttgataactgtgcactgtaaattttggaaag
caaagcagaggagaacatggaaatatcccattctagacctttactaggaa
aatgttatagaggggaaaggcgacaggtgtgtgctcacaacagggaaggt
actattgtttacttataatgtctcctggtggtgctaatggtacattttat
atcctgttatgttcactggcttctcagaagtacacatgatgcttcctcct
cctcctgctcctcctccttcttcttcctcctctttcttcttccttctcct
gtctccttccttctcctccttcttctttttgtacagattctaaaagtgct
ctggtgccatggaggagcctggtgtaacacaccaggagagaccaaatcat
ttctcagtcttatgcagacaaacacatgcctgcagaaattttgtcatttg
tgaaagcacattttctaacttataaaatgcatgtagtataagtagggaaa
taaaggtgttttaaagataatcccccatgacgtgtttctttacaattcaa
tttcctttttctgtttttgaacactatcaatggtaaccagtctacttcac
atggatttgggaaatgaggcatcatccttacagaaaccccagaaatgtta
tttgaagaaattactatgattaaaggggaaaagcacatgccctaggctgt
tagagagtacgcacgaaagatcagattttatcgttctctctaaagacagc
atagccatgatttacattttcaaaattattataactctttttaggtagta
caatttgtctggtattttaatctatttttgagttaacatctattagcact
tttgaaatgtgaggcatttgctatgctattaaaggtaaatcataccatag
tttcggatgtgctgctgccgtgctgcttgcttcggaggggggggagagaa
gctcaaggttccaccaccttctgtcgcggtcccttcttacagggtcctcc
ccgacactattcgcagaaagctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63528664_63529816
seq2: B6Ng01-114F12.b_46_1197 (reverse)

seq1  AGCTGGCTGCCTAACACAGGGGAGGTGCCAGGAAATTTAAGAGAAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTGCCTAACACAGGGGAGGTGCCAGGAAATTTAAGAGAAAAAGG  50

seq1  AAGAACAAAGGAATGTCATTCCTGTTCATTGT-CCCGCACCGCTTGTACA  99
      ||| |||||||||| ||||||||||||||||| |||||||||| ||||||
seq2  AAG-ACAAAGGAATTTCATTCCTGTTCATTGTCCCCGCACCGC-TGTACA  98

seq1  GAA-CAGGTACTTAAAAGGCATTTGCTGGGTGAAGAAAATGCAGGAACAG  148
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGTAC-TAAAAGGCATTTGCTGGGTGAAGAAAATGCAGGAACAG  147

seq1  TGGGCATTT-GAGAGGCAAGAAGACAGCATGCAATGTTTTGTGTTGAAAG  197
      ||||||||| |||| ||||||||||||||||| |||||||||||||||||
seq2  TGGGCATTTGGAGAAGCAAGAAGACAGCATGC-ATGTTTTGTGTTGAAAG  196

seq1  GTCAAAGTCCTTGCCT-AACTATCATAATATGGATCCTATAGATTTCTGA  246
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  GTCAAAGTCCTTGCCTAAACTATCATAATATGGATCCTATAAATTTCTGA  246

seq1  GGAGGAAGCAGGCTAAACTAGCCTGTAAAACGGGGAGGACTGTTAATTCC  296
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGGAAGCAGGCTAAACTAGCCTGTAAAACGGGGAGGACTGTTAA-TCC  295

seq1  AAGAGAAGTTTTCTGATTTCAGCAGGTCAGCTGTTATGCCTTCCAGCCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTTTTCTGATTTCAGCAGGTCAGCTGTTATGCCTTCCAGCCAG  345

seq1  GTGCCTGTCCATCCTATCCTGAGCACCTTCAAAGATTTAGATGTAGAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTCCATCCTATCCTGAGCACCTTCAAAGATTTAGATGTAGAAAA  395

seq1  CAGTATTGTATAATCAGGAGGTCCCTTTAACATAAAACAAGTTCTTTGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTATAATCAGGAGGTCCCTTTAACATAAAACAAGTTCTTTGCT  445

seq1  ATTTCACCCCTCTTCTCCCATTTCTAGATTGTGTCAATGGAGAACTGGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCCCTCTTCTCCCATTTCTAGATTGTGTCAATGGAGAACTGGTC  495

seq1  AATGCTGGAACAGTAACATAGCATATAGTCACCATTAATAGTCTTAGATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGAACAGTAACATAGCATATAGTCACCATTAATAGTCTTAGATT  545

seq1  GGCTCTTCACCTTCCCCTTTTCAAAACCTTTCCCCATATGACCTTTTACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCACCTTCCCCTTTTCAAAACCTTTCCCCATATGACCTTTTACA  595

seq1  TTCCAAAAACATTTTACATTTCTTTACTGACTTTTTACTAATTTTTAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAACATTTTACATTTCTTTACTGACTTTTTACTAATTTTTAGAT  645

seq1  TCTTCCTCTTAAAGTGTGGAAACTCATCAAATAGTTTAATAAAAACTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTAAAGTGTGGAAACTCATCAAATAGTTTAATAAAAACTTAT  695

seq1  ACAATCTCAAACATAACAATGAATGATTCCCTAAATCCTAGTATCACATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCAAACATAACAATGAATGATTCCCTAAATCCTAGTATCACATG  745

seq1  AGTTTTACAGCACACTTGGCCGAAAGCTAGCAAGCTCTGACTGCCCTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAGCACACTTGGCCGAAAGCTAGCAAGCTCTGACTGCCCTGTG  795

seq1  CCTCTTACTCTCTGGACAATGGCTCACAGTGTGCTCATTTGGTTGCATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACTCTCTGGACAATGGCTCACAGTGTGCTCATTTGGTTGCATCT  845

seq1  CTCAATAGCTTGTGGCTAGACCTTTGGGCCTGGAGACTGTCCAGGACGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAGCTTGTGGCTAGACCTTTGGGCCTGGAGACTGTCCAGGACGTG  895

seq1  CCTTATCTTAGTTTTCTACAGATCTTGCCACAGGACCTAGACACACCTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTTAGTTTTCTACAGATCTTGCCACAGGACCTAGACACACCTAC  945

seq1  TGCAGAGCAAAACTACTCAGAAAGCCTCCTTGTGCTCCAACAGGTACCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCAAAACTACTCAGAAAGCCTCCTTGTGCTCCAACAGGTACCAC  995

seq1  TGTTCCCACCCACCTCAAGTCCACAGTCCATTTCCGGTCATGTCTGCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCACCCACCTCAAGTCCACAGTCCATTTCCGGTCATGTCTGCTCT  1045

seq1  CAAAGTGTGTGTGCTGCCTGCATAGACTTTGCTCACAATATAACCTTGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGTGTGCTGCCTGCATAGACTTTGCTCACAATATAACCTTGAA  1095

seq1  TTTGTTCTCTATTTCTCAAATATGATTTATATAATTTATTACCATGATTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCTATTTCTCAAATATGATTTATATAATTTATTACCATGATTT  1145

seq1  TGAATTC  1153
      |||||||
seq2  TGAATTC  1152

seq1: chr17_63412751_63414166
seq2: B6Ng01-114F12.g_70_1193

seq1  GAATTCTCTGGCTTTCCCAGGATATGGGTAAGAGTGAGTAACAAGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCTTTCCCAGGATATGGGTAAGAGTGAGTAACAAGCTGGC  50

seq1  TCTGAGCAGCTGCATATGAAATGGTAACCGTGGTCCGCAGTGAGGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAGCTGCATATGAAATGGTAACCGTGGTCCGCAGTGAGGACACA  100

seq1  TGCCTTATAAGCAATACTTTTGATAACTGTGCACTGTAAATTTTGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATAAGCAATACTTTTGATAACTGTGCACTGTAAATTTTGGAAAG  150

seq1  CAAAGCAGAGGAGAACATGGAAATATCCCATTCTAGACCTTTACTAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGAGGAGAACATGGAAATATCCCATTCTAGACCTTTACTAGGAA  200

seq1  AATGTTATAGAGGGGAAAGGCGACAGGTGTGTGCTCACAACAGGGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATAGAGGGGAAAGGCGACAGGTGTGTGCTCACAACAGGGAAGGT  250

seq1  ACTATTGTTTACTTATAATGTCTCCTGGTGGTGCTAATGGTACATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTTTACTTATAATGTCTCCTGGTGGTGCTAATGGTACATTTTAT  300

seq1  ATCCTGTTATGTTCACTGGCTTCTCAGAAGTACACATGATGCTTCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTATGTTCACTGGCTTCTCAGAAGTACACATGATGCTTCCTCCT  350

seq1  CCTCCTGCTCCTCCTCCTTCTTCTTCCTCCTCTTTCTTCTTCCTTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCTCCTCCTCCTTCTTCTTCCTCCTCTTTCTTCTTCCTTCTCCT  400

seq1  GTCTCCTTCCTTCTCCTCCTTCTTCTTTTTGTACAGATTCTAAAAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTCCTTCTCCTCCTTCTTCTTTTTGTACAGATTCTAAAAGTGCT  450

seq1  CTGGTGCCATGGAGGAGCCTGGTGTAACACACCAGGAGAGACCAAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCATGGAGGAGCCTGGTGTAACACACCAGGAGAGACCAAATCAT  500

seq1  TTCTCAGTCTTATGCAGACAAACACATGCCTGCAGAAATTTTGTCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCTTATGCAGACAAACACATGCCTGCAGAAATTTTGTCATTTG  550

seq1  TGAAAGCACATTTTCTAACTTATAAAATGCATGTAGTATAAGTAGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACATTTTCTAACTTATAAAATGCATGTAGTATAAGTAGGGAAA  600

seq1  TAAAGGTGTTTTAAAGATAATCCCCCATGACGTGTTTCTTTACAATTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTTTTAAAGATAATCCCCCATGACGTGTTTCTTTACAATTCAA  650

seq1  TTTCCTTTTTCTGTTTTTGAACACTATCAATGGTAACCAGTCTACTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTTCTGTTTTTGAACACTATCAATGGTAACCAGTCTACTTCAC  700

seq1  ATGGATTTGGGAAATGAGGCATCATCCTTACAGAAACCCCAGAAATGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTGGGAAATGAGGCATCATCCTTACAGAAACCCCAGAAATGTTA  750

seq1  TTTGAAGAAATTACTATGATTAAAGGGGAAAAGCACATGCCCTAGGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAATTACTATGATTAAAGGGGAAAAGCACATGCCCTAGGCTGT  800

seq1  TAGAGAGTACGCACGAAAGATCAGATTTTATCGTTCTCTCTAAAGACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTACGCACGAAAGATCAGATTTTATCGTTCTCTCTAAAGACAGC  850

seq1  ATAGCCATGATTTACATTTTCAAAATTATTATAACTCTTTTTAAGGTAGT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAGCCATGATTTACATTTTCAAAATTATTATAACTCTTTTT-AGGTAGT  899

seq1  ACAATTTGTCTGGTATTTTAATCTA-TTTTGAGTTAACATCTATTAGCAC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAATTTGTCTGGTATTTTAATCTATTTTTGAGTTAACATCTATTAGCAC  949

seq1  TTTTTGAAAATGTGAGGCAATTTGCTATGCTAATTAAGGTAAATCATACC  999
      ||||   ||||||||||| ||||||||||||| | |||||||||||||||
seq2  TTTT--GAAATGTGAGGC-ATTTGCTATGCTATTAAAGGTAAATCATACC  996

seq1  ATAGTTTCGGTATGTTGCTGCTGCCGTTGCTGC-TGCTCCGGAGGGGTGA  1048
      |||||||||| ||| ||||||||||| |||||| |||| |||||||| | 
seq2  ATAGTTTCGG-ATG-TGCTGCTGCCG-TGCTGCTTGCTTCGGAGGGG-GG  1042

seq1  GGAGAGAAGCTCAGAGTTCCACCACCCTTCTGTCGCCGTCCCTTCTTACC  1098
      |||||||||||||  ||||||||| ||||||||||| |||||||||||| 
seq2  GGAGAGAAGCTCAAGGTTCCACCA-CCTTCTGTCGCGGTCCCTTCTTACA  1091

seq1  AGGTCCTCACCGACACCATCGCCAGAAAGCTC-CTGATCCATAAGAACCT  1147
       ||||||| ||||||| ||   ||||||||||                  
seq2  GGGTCCTCCCCGACACTATTCGCAGAAAGCTCT-----------------  1124

seq1  AGCCTAGAATTCAGCTATTCCAAAAACCACTCAACTGTTCAAAAAAATAC  1197
                                                        
seq2  --------------------------------------------------  1124

seq1  AACGTCCTTGAGACAAGGTTTCTCACCGAACAGGAGCCTTGCCCCGTTGG  1247
                                                        
seq2  --------------------------------------------------  1124

seq1  CTAGCTGGCTGGCCGGTGAGCCCCTGGTACCCACGTGTCTCCATCCCTCT  1297
                                                        
seq2  --------------------------------------------------  1124

seq1  GTGCTGGGGTTACAGAGGTGTGTCTCCCTGGATGCTGGTGACTTGCACTC  1347
                                                        
seq2  --------------------------------------------------  1124

seq1  AAGCCCTCATCCTTGCGGAAATCATTCTCCCCAGCCTGGAGTAAGTTTCT  1397
                                                        
seq2  --------------------------------------------------  1124

seq1  CTCTGACATAGAAAGCTCT  1416
                         
seq2  -------------------  1124