BAC Information

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BAC

Clone NameB6Ng01-115C04
Chromosome17 (Build37)
Map Location 57,287,724 - 57,430,190
singlet/doubletdoublet
Overlap geneCd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1
Upstream geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9
Downstream geneEmr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C04.bB6Ng01-115C04.g
ACCDH920478DH920479
length1,272856
definitionDH920478|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C04, 5' end.DH920479|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,287,724 - 57,289,005)(57,429,335 - 57,430,190)
sequence
gaattctgattatgaatgccgggtacttttgcttacacatctctagtgct
cagatgacaggtgtgcaccaccacactgggtttaagaggtgctagggctt
tgtgagttcggggcagtgctcaacttactgagccacatctcatagtaact
caggttggcttcaaactcccaatgttgcaaaggatgagtttgaactcttg
aacgcctgaaccttctgtctctgttaccctagtgctgggctgacagcctc
atgtggtgctgaggatgaaatcaggggcttcctggatgctgggtttatgc
aaagccaactcagaccattcccttcatatgtccctccctcgctccctcct
gctcttccaccctccctcagtccctctgtccctccttccttcttttcctc
cctcctccctctttcctgcgtccatcctccatcccacccactggatggat
tcccacccagccttacctgtgagattcagctgtaactcagctgtgtgcgg
ctggaagaaaatacaagaaaacagagaaagcacattagagcctggggctt
gaaggactctctgatcccgtgtgctgtcaggctgcagtccatcctgcatc
cctttggcccaatttgagattgttttcgttgatttttctttgcgtaaagt
cttatagaggccggcgagaagtttcaggcctcacacaaagtaacaagatc
gcccaaacaatttaagtgtttgtcttccctggaacccggggctcatgcca
cccttcccactacttctccaaagatgcatgtgggcggtgcctggcctttc
agccacaggcggctgggaatctcttccaccccctcagcaccagctaggta
agcccccaacaacgtgtgcgtcaatctcgggcatggtagggaaagtcggg
gaaccaaatcctcccggccgctcaaggtgacatctttcccagtccgggat
ccctcgtctgctcctgggcagctgggaccgcctggcctccatagtcggcc
tctcctgtctctctctgtctcatcttcctctttacgatccatctcattcc
gatttgcgcgccccacccgcccccgcccgttcgcgttctttgcttgtgct
tagcgctttcccttccttctctcacctcagtgctccagccagcctctgtt
gcttgctactgagtagtccgctctcaagtgaaccaccagcaaaccagtat
taaccacccgacgcgcgattgcaattgggcgcgtggaacttcgttgctgc
tctcagcgaccacaggggcaag
gaattcttccttgttttatagggacaacccctctgcttcccttatcctcc
gggacgaaagaagaccatggcgctagacaagcaagaaggctttaggcaaa
tcaggagccaggcactgtgatcaagccggaagttggcttttggtgcctct
gcccaaaatagagagaattctgttcaaggaagtagcagtaaggacagtgg
cctctcttgggggctgggagaaagcggcccagactcaacacaaattctgc
cttctgcgctttccacacccacaacccaaacccaggagatggccggaaac
aggaaatgcctgttaccaggcctggctggggaagatagacaaggggtaga
ggcatggctctctgccttccttcagccctgtaatctttcagactccagct
agctccctgaggcttcccagagcgggtggtcacgctgctcatcctgtcca
gagctttgaattgaggagctgatgacccaactcttcagcatgagtctaaa
gcattctgggaatcagacttcctcttctttccctgtcacctcacacccca
gtacgccttccacaactaggtgtctggtgactcccagctgaaactggtaa
gcagggggaccttggacaggtcatcctgccttgggttctccaaccaaaaa
tcagaaatgaaatcccagtgtggtggaatatacctgtaatctccgcgctc
aggaagaggaggcagagcaaaggatggctaaactctgaggtaagcatgga
ctacagagtgagttccaggttgtccagggaaccacagtgagaccctgtgt
caaaaacaggggtgggaaacaggggtgaggggagaagatagtggaaggga
gagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_57287724_57289005
seq2: B6Ng01-115C04.b_44_1315

seq1  GAATTCTGATTATGAATGCCGGGTACTTTTGCTTACACATCTCTAGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTATGAATGCCGGGTACTTTTGCTTACACATCTCTAGTGCT  50

seq1  CAGATGACAGGTGTGCACCACCACACTGGGTTTAAGAGGTGCTAGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACAGGTGTGCACCACCACACTGGGTTTAAGAGGTGCTAGGGCTT  100

seq1  TGTGAGTTCGGGGCAGTGCTCAACTTACTGAGCCACATCTCATAGTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCGGGGCAGTGCTCAACTTACTGAGCCACATCTCATAGTAACT  150

seq1  CAGGTTGGCTTCAAACTCCCAATGTTGCAAAGGATGAGTTTGAACTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGCTTCAAACTCCCAATGTTGCAAAGGATGAGTTTGAACTCTTG  200

seq1  AACGCCTGAACCTTCTGTCTCTGTTACCCTAGTGCTGGGCTGACAGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCTGAACCTTCTGTCTCTGTTACCCTAGTGCTGGGCTGACAGCCTC  250

seq1  ATGTGGTGCTGAGGATGAAATCAGGGGCTTCCTGGATGCTGGGTTTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGCTGAGGATGAAATCAGGGGCTTCCTGGATGCTGGGTTTATGC  300

seq1  AAAGCCAACTCAGACCATTCCCTTCATATGTCCCTCCCTCGCTCCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAACTCAGACCATTCCCTTCATATGTCCCTCCCTCGCTCCCTCCT  350

seq1  GCTCTTCCACCCTCCCTCAGTCCCTCTGTCCCTCCTTCCTTCTTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCACCCTCCCTCAGTCCCTCTGTCCCTCCTTCCTTCTTTTCCTC  400

seq1  CCTCCTCCCTCTTTCCTGCGTCCATCCTCCATCCCACCCACTGGATGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCTCTTTCCTGCGTCCATCCTCCATCCCACCCACTGGATGGAT  450

seq1  TCCCACCCAGCCTTACCTGTGAGATTCAGCTGTAACTCAGCTGTGTGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCAGCCTTACCTGTGAGATTCAGCTGTAACTCAGCTGTGTGCGG  500

seq1  CTGGAAGAAAATACAAGAAAACAGAGAAAGCACATTAGAGCCTGGGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAAAATACAAGAAAACAGAGAAAGCACATTAGAGCCTGGGGCTT  550

seq1  GAAGGACTCTCTGATCCCGTGTGCTGTCAGGCTGCAGTCCATCCTGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTCTCTGATCCCGTGTGCTGTCAGGCTGCAGTCCATCCTGCATC  600

seq1  CCTTTGGCCCAATTTGAGATTGTTTTCGTTGATTTTTCTTTGCGTAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCCCAATTTGAGATTGTTTTCGTTGATTTTTCTTTGCGTAAAGT  650

seq1  CTTATAGAGGCCGGCGAGAAGTTTCAGGCCTCACACAAAGTAACAAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAGGCCGGCGAGAAGTTTCAGGCCTCACACAAAGTAACAAGATC  700

seq1  GCCCAAACAATTTAAGTGTTTGTCTTCCCTGGAACCCGGGGCTCATGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAACAATTTAAGTGTTTGTCTTCCCTGGAACCCGGGGCTCATGCCA  750

seq1  CCCTTCCCACTACTTCTCCAAAGATGCATGTGGGCGGTGCCTGGCCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCACTACTTCTCCAAAGATGCATGTGGGCGGTGCCTGGCCTTTC  800

seq1  AGCCACAGGCGGCTGGGAATCTCTTCCACCCCCTCAGCACCAGCTAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGCGGCTGGGAATCTCTTCCACCCCCTCAGCACCAGCTAGGTA  850

seq1  AGCCCCCAACAACGTGTGCGTCAATCTCGGGCATGGTAGGGAAAGTCGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAACAACGTGTGCGTCAATCTCGGGCATGGTAGGGAAAGTCGGG  900

seq1  GAACCAAATCCTCCCGGCCGCTCAAGGTGACATCTTTCCCAGTCCGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAATCCTCCCGGCCGCTCAAGGTGACATCTTTCCCAGTCCGGGAT  950

seq1  CCCTCGTCTGCTCCTGGGCAGCTGGGACCGGCCTGGCCTCCATAGTCGGC  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCTCGTCTGCTCCTGGGCAGCTGGGACC-GCCTGGCCTCCATAGTCGGC  999

seq1  CTCTCCTGTCCTCTCTCTGTCTCATCTTCCTCTTTACGATCCATCTCATT  1050
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGT-CTCTCTCTGTCTCATCTTCCTCTTTACGATCCATCTCATT  1048

seq1  CCGATTTTGCGCGCCCCCCACCCCGCCCCCCGCCCCGTTCGCGTCCTTTG  1100
      |||| ||||||||||||    |||||||||   ||||||||||| |||||
seq2  CCGA-TTTGCGCGCCCC---ACCCGCCCCC--GCCCGTTCGCGTTCTTTG  1092

seq1  CTTGTGCTTTAGCGCTTTCTC-TCCTCCTCTCACCTCAGGGTGCTCCAG-  1148
      ||||||| ||||||||||| | |||| |||||||||||  ||||||||| 
seq2  CTTGTGC-TTAGCGCTTTCCCTTCCTTCTCTCACCTCA--GTGCTCCAGC  1139

seq1  CAGCCTCTGTTGCTGCTTACTGAGTAGTCCGCT-ACAATGAAACCAACAG  1197
      ||||||||||||||   ||||||||||||||||  |||   ||||| |||
seq2  CAGCCTCTGTTGCTTGCTACTGAGTAGTCCGCTCTCAAGTGAACCACCAG  1189

seq1  CAAAACACAGTAATAAACACCACCAGCAGCAGCCATGGCCATT-GGCGC-  1245
      ||||   ||||| ||   |||||| |  || || || || ||| ||||| 
seq2  CAAA--CCAGTATTA---ACCACCCGACGC-GCGATTGCAATTGGGCGCG  1233

seq1  TGGAAC-GCGGTCCCGCTC-CAGCGAACCCAGGGGCAAG  1282
      ||||||  || | | |||| |||||| | ||||||||||
seq2  TGGAACTTCGTTGCTGCTCTCAGCGACCACAGGGGCAAG  1272

seq1: chr17_57429335_57430190
seq2: B6Ng01-115C04.g_68_923 (reverse)

seq1  CTTCTCTCCCTTCCACTATCTTCTCCCCTCACCCCTGTTTCCCACCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCCTTCCACTATCTTCTCCCCTCACCCCTGTTTCCCACCCCTG  50

seq1  TTTTTGACACAGGGTCTCACTGTGGTTCCCTGGACAACCTGGAACTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACACAGGGTCTCACTGTGGTTCCCTGGACAACCTGGAACTCACT  100

seq1  CTGTAGTCCATGCTTACCTCAGAGTTTAGCCATCCTTTGCTCTGCCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCCATGCTTACCTCAGAGTTTAGCCATCCTTTGCTCTGCCTCCT  150

seq1  CTTCCTGAGCGCGGAGATTACAGGTATATTCCACCACACTGGGATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGCGCGGAGATTACAGGTATATTCCACCACACTGGGATTTCAT  200

seq1  TTCTGATTTTTGGTTGGAGAACCCAAGGCAGGATGACCTGTCCAAGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTTGGTTGGAGAACCCAAGGCAGGATGACCTGTCCAAGGTCC  250

seq1  CCCTGCTTACCAGTTTCAGCTGGGAGTCACCAGACACCTAGTTGTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTACCAGTTTCAGCTGGGAGTCACCAGACACCTAGTTGTGGAAG  300

seq1  GCGTACTGGGGTGTGAGGTGACAGGGAAAGAAGAGGAAGTCTGATTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACTGGGGTGTGAGGTGACAGGGAAAGAAGAGGAAGTCTGATTCCCA  350

seq1  GAATGCTTTAGACTCATGCTGAAGAGTTGGGTCATCAGCTCCTCAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTAGACTCATGCTGAAGAGTTGGGTCATCAGCTCCTCAATTCA  400

seq1  AAGCTCTGGACAGGATGAGCAGCGTGACCACCCGCTCTGGGAAGCCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGACAGGATGAGCAGCGTGACCACCCGCTCTGGGAAGCCTCAG  450

seq1  GGAGCTAGCTGGAGTCTGAAAGATTACAGGGCTGAAGGAAGGCAGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGCTGGAGTCTGAAAGATTACAGGGCTGAAGGAAGGCAGAGAGC  500

seq1  CATGCCTCTACCCCTTGTCTATCTTCCCCAGCCAGGCCTGGTAACAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTACCCCTTGTCTATCTTCCCCAGCCAGGCCTGGTAACAGGCA  550

seq1  TTTCCTGTTTCCGGCCATCTCCTGGGTTTGGGTTGTGGGTGTGGAAAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTCCGGCCATCTCCTGGGTTTGGGTTGTGGGTGTGGAAAGCG  600

seq1  CAGAAGGCAGAATTTGTGTTGAGTCTGGGCCGCTTTCTCCCAGCCCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCAGAATTTGTGTTGAGTCTGGGCCGCTTTCTCCCAGCCCCCAA  650

seq1  GAGAGGCCACTGTCCTTACTGCTACTTCCTTGAACAGAATTCTCTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCACTGTCCTTACTGCTACTTCCTTGAACAGAATTCTCTCTATT  700

seq1  TTGGGCAGAGGCACCAAAAGCCAACTTCCGGCTTGATCACAGTGCCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGAGGCACCAAAAGCCAACTTCCGGCTTGATCACAGTGCCTGGC  750

seq1  TCCTGATTTGCCTAAAGCCTTCTTGCTTGTCTAGCGCCATGGTCTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTTGCCTAAAGCCTTCTTGCTTGTCTAGCGCCATGGTCTTCTTT  800

seq1  CGTCCCGGAGGATAAGGGAAGCAGAGGGGTTGTCCCTATAAAACAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCGGAGGATAAGGGAAGCAGAGGGGTTGTCCCTATAAAACAAGGAA  850

seq1  GAATTC  856
      ||||||
seq2  GAATTC  856