BAC Information

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BAC

Clone NameB6Ng01-115N10
Chromosome17 (Build37)
Map Location 41,781,193 - 41,782,439
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115N10.bB6Ng01-115N10.g
ACCDH921000DH921001
length1,254780
definitionDH921000|Mus musculus domesticus DNA, BAC clone: B6Ng01-115N10, 5' end.DH921001|Mus musculus domesticus DNA, BAC clone: B6Ng01-115N10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggctgacaaggaggtgagttaaagaactctctgtgagcctct
ctcttgtgagaaaaaaacagagccagcatgtgtgaatttgcgagaattta
acacttatttaagcacagaacagtaataaagagttaagtttttaacatat
caatagttaagtcttcagcacttataagcacagaacaataagaaagagtt
aagtcttcagcatttaataaaactcagaaatttataaagtaaagtaaagc
agagagagagagaaaagaagccaggaggttttagccacagagtagcaagg
gagtgtttagtttccagaaaccatcacttccaatgcccaatacacttaga
attaaaaggcctgagatcatcagtctcttgacctttgtccaacatttaat
ccaaattctccagccggagcagtcctccagcagaacattgctagaataag
gttcccgtggagcaatagagaggggaactgtagagtataagtgatctgat
agggaaacagaaaaaggttctttagggaaagcaaggaagatcaatagaga
aggtaaatgaataggaagggtgtgtgaaaaagccatattaaatcatacct
cttatctgcataggagagctatagtacatgtaagtcagtgtgtttataca
cacatatacacatacatatgtacatatgcacacacatatttgtgtgtgta
tgtgtgtgtgatattttcttatttatgctaacagtgctcactctaagagt
caaggaccatctaacaaaacctaagatgtctggcattgaaggattttttt
atgaattatttgtcacaactgttcaagaagcccagaaagaaagacacaat
aacttcagacataggttctcagaaacaacaacacacatgcacacacacac
acacacacacacacacacacacacacacacagtggcatatgtggggtgta
atatgagtagtctaaatcatgagtatttcctgaaacaaagatcagtctat
ggagactggatattttcagcagtccccatctggtgctagaagcacagaaa
agttctgaaggaaagttccagttctgattgaaattctgagaagtaggttt
acaacagccaaagggttttgaaaaacaaaaatggaagaacctagaacagc
tagagatgaagtcaagctatcataaaagtccatcccttccattcttaatt
gtgaggtagcatcgacagaaatgtgtccagccttaacggttccacaccct
caaa

gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaactgcaaatcaaaacaatcctgagat
tccacctcataccagtcagaatggctaagatcaagaattcaggtgacagc
agatgctggcaaggatgtggaaaaagaggaacacttcttgattgttggtg
ggattgccagcttgtacaaccactctggaaatcagtatggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctttcctgggc
atatatccagaagatgttccaactggtaagaaggacacacactccacaat
gttcatatcagccttatttataatagccagaagctgaaaagaacccagat
gtgtggtacatttacacagtggagtactactcagctattaaaaacaatga
atttatgtaattcctaggcaaatggatggactggagggcatcatcctgag
tgaggtaacccaatcacaaaagaactcacatgatatgtactcactgataa
gtggatattagcccagaaacttagaatacccaagatatatgctacaattt
gcgaagcacatgagactcaggaggaacgaagaccagggtgtggaagcttt
gcaccttagaattgggagaggaacgcccatggagggagttgcagagacga
agtttggagctcagatgtaggggtggaccatctagagactgccttatccg
gggatccatttatctctagctcctccgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41781193_41782439
seq2: B6Ng01-115N10.b_49_1302

seq1  GAATTCCTGGCTGACAAGGAGGTGAGTTAAAGAACTCTCTGTGAGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTGACAAGGAGGTGAGTTAAAGAACTCTCTGTGAGCCTCT  50

seq1  CTCTTGTGAGAAAAAAACAGAGCCAGCATGTGTGAATTTGCGAGAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAGAAAAAAACAGAGCCAGCATGTGTGAATTTGCGAGAATTTA  100

seq1  ACACTTATTTAAGCACAGAACAGTAATAAAGAGTTAAGTTTTTAACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATTTAAGCACAGAACAGTAATAAAGAGTTAAGTTTTTAACATAT  150

seq1  CAATAGTTAAGTCTTCAGCACTTATAAGCACAGAACAATAAGAAAGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTAAGTCTTCAGCACTTATAAGCACAGAACAATAAGAAAGAGTT  200

seq1  AAGTCTTCAGCATTTAATAAAACTCAGAAATTTATAAAGTAAAGTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCAGCATTTAATAAAACTCAGAAATTTATAAAGTAAAGTAAAGC  250

seq1  AGAGAGAGAGAGAAAAGAAGCCAGGAGGTTTTAGCCACAGAGTAGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAAAGAAGCCAGGAGGTTTTAGCCACAGAGTAGCAAGG  300

seq1  GAGTGTTTAGTTTCCAGAAACCATCACTTCCAATGCCCAATACACTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTAGTTTCCAGAAACCATCACTTCCAATGCCCAATACACTTAGA  350

seq1  ATTAAAAGGCCTGAGATCATCAGTCTCTTGACCTTTGTCCAACATTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGGCCTGAGATCATCAGTCTCTTGACCTTTGTCCAACATTTAAT  400

seq1  CCAAATTCTCCAGCCGGAGCAGTCCTCCAGCAGAACATTGCTAGAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCTCCAGCCGGAGCAGTCCTCCAGCAGAACATTGCTAGAATAAG  450

seq1  GTTCCCGTGGAGCAATAGAGAGGGGAACTGTAGAGTATAAGTGATCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGTGGAGCAATAGAGAGGGGAACTGTAGAGTATAAGTGATCTGAT  500

seq1  AGGGAAACAGAAAAAGGTTCTTTAGGGAAAGCAAGGAAGATCAATAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAGAAAAAGGTTCTTTAGGGAAAGCAAGGAAGATCAATAGAGA  550

seq1  AGGTAAATGAATAGGAAGGGTGTGTGAAAAAGCCATATTAAATCATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATGAATAGGAAGGGTGTGTGAAAAAGCCATATTAAATCATACCT  600

seq1  CTTATCTGCATAGGAGAGCTATAGTACATGTAAGTCAGTGTGTTTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGCATAGGAGAGCTATAGTACATGTAAGTCAGTGTGTTTATACA  650

seq1  CACATATACACATACATATGTACATATGCACACACATATTTGTGTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACACATACATATGTACATATGCACACACATATTTGTGTGTGTA  700

seq1  TGTGTGTGTGATATTTTCTTATTTATGCTAACAGTGCTCACTCTAAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGATATTTTCTTATTTATGCTAACAGTGCTCACTCTAAGAGT  750

seq1  CAAGGACCATCTAACAAAACCTAAGATGTCTGGCATTGAAGGATTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCATCTAACAAAACCTAAGATGTCTGGCATTGAAGGATTTTTTT  800

seq1  ATGAATTATTTGTCACAACTGTTCAAGAAGCCCAGAAAGAAAGACACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATTTGTCACAACTGTTCAAGAAGCCCAGAAAGAAAGACACAAT  850

seq1  AACTTCAGACATAGG-TCCCAGAAACAACAACACACATGCACACACACAC  899
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  AACTTCAGACATAGGTTCTCAGAAACAACAACACACATGCACACACACAC  900

seq1  ACACACACACACACACACACACACACACACAGTGGCATATGTGGGGTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGTGGCATATGTGGGGTGTA  950

seq1  ATATGAGTAGTCT-AATCATGAGTATTTCCTGATACAAAGATCAGTCTAT  998
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  ATATGAGTAGTCTAAATCATGAGTATTTCCTGAAACAAAGATCAGTCTAT  1000

seq1  -GAGACTGGATA-TTTCAGCAGTCCCCATCTGGTGCTAGAGCCACAGAAA  1046
       ||||||||||| |||||||||||||||||||||||||||  ||||||||
seq2  GGAGACTGGATATTTTCAGCAGTCCCCATCTGGTGCTAGAAGCACAGAAA  1050

seq1  AGTCCTGAAGGACAGTTTCCAGTTCTGATTGAAATTCTGAAGAAGTAGGT  1096
      ||| |||||||| || ||||||||||||||||||||||| ||||||||||
seq2  AGTTCTGAAGGAAAG-TTCCAGTTCTGATTGAAATTCTG-AGAAGTAGGT  1098

seq1  TTTAACAACAG-CAAAGGGTTTTTTGAGAACAAGATGGAAGAA-CTAG-A  1143
      ||  ||||||| |||||||||||   | |  || ||||||||| |||| |
seq2  TT--ACAACAGCCAAAGGGTTTTGAAAAACAAAAATGGAAGAACCTAGAA  1146

seq1  CAGCTAGAG-TGAAGTCAAGCTATCAT-AAAGTCCATTTCTTCCATTTCC  1191
      ||||||||| ||||||||||||||||| |||||||||  |||||| ||| 
seq2  CAGCTAGAGATGAAGTCAAGCTATCATAAAAGTCCATCCCTTCCA-TTCT  1195

seq1  TTTTTATGTGGTTGCTACCAGA-AAATGTGGCCCAGCCTTAAC-GTTC--  1237
      |  || || ||| ||  | | | |||||| | ||||||||||| ||||  
seq2  TAATTGTGAGGTAGCATCGACAGAAATGT-GTCCAGCCTTAACGGTTCCA  1244

seq1  CAACCTCAAA  1247
      || |||||||
seq2  CACCCTCAAA  1254


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