BAC Information

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BAC

Clone NameB6Ng01-115P11
Chromosome17 (Build37)
Map Location 45,855,506 - 45,972,021
singlet/doubletdoublet
Overlap geneLOC100043363
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115P11.bB6Ng01-115P11.g
ACCDH921089DH921090
length1,163375
definitionDH921089|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P11, 5' end.DH921090|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,970,857 - 45,972,021)(45,855,506 - 45,855,886)
sequence
gaattctcctacagtaaaacccacccttttcatcttctgctttgcagttc
tacagatccaaacacatgtgtagaattgtgtaagccccatcaaaacaatg
ccatcaccctcaagcgctccctcgtgctacccctctgtagacacaccctc
accccgccagtaaccctggcaaccactgatacattttccaccactgcagt
tttgtcttttccagaccgtcagataaatgaaattatccagtgtgtaacct
tttggcagccttctctcatttaatagaaatgtctttgagtgccatccaag
ttgtcgcatgtgacagtcgcaaccctttcgctgaggaatagtagtctgtt
gttgcatgttgcttactctgtaagccattcatccgttgaaagatgtctgg
gttgtttgtggctgtgcgctactataagcagagctgctatgaacatttga
gggcaaggtttcgtgggaagaaaagttttcatttcttctctagggtaaat
acaatggcatgttgcttaacaacacagagatgttctgagaaatgcactgg
taagtggttttgtccttgtgagaccatctagggcatactgacacaaacct
caatggtatagcccccctgcatgcctgggtttgtggtctagcctggttct
cggaggccacaaactgaaataacacatcactgagtggattccttgggcca
cggtgatatggtgacatttgtacatctaaacacatgtaaccgtagaaaag
acacagcaaatgtgcagtccaaaggggtggggtgggacgctgggaatggg
gacctctagagtgcttgcctagcgtgcatgacgccttgggttcaatcctg
aacacagtataaaccagatgtggtggcgcacatttataatctcagtgagc
tggaggtaaaggtgagaggatcagaaggtcaatatcatccccgggtgatc
gagttcaaggccaatcaggcttacgtgaaacctggcttcaatgtttgtgt
aagtgtggccaggcctgatggcacagcctatatcccttgtctactcagag
gctgagtcagagggatcagaaatacaaggctgcgggacagcaggtggagt
tcagaacatctgaattcatttatgagactgtgtcaataggagtggaaacg
gggcgtgatgaga
ccctagtgtgtgtgtaccatcactcccgtcctgttttcccagtagagatg
caaagtgagggccagagagccagaaccggctgaggggggcggctgggaac
agagcagtctgaggtaatctggccatcagagctgtggctgcttcttgtgc
agagtctggaagggttccacagcccacagcctgatcccagcctgttccaa
ctgaagcctactttggcatctggcaagagctcacttgcctagtcctctac
cacataaacccaacacagtggagcatgcctgtggtcccagaaattaagag
gtagagacaggagatcctgaggttcaaagtcatccttggctggtgagggt
tatggttagggttatggttagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45970857_45972021
seq2: B6Ng01-115P11.b_49_1208 (reverse)

seq1  TCTCATCAGCCCCCGTTTCCACTTCTTATTTTGACACAGTCTCACTAAAT  50
      ||||||||  ||||||||||||| |   | |||||||||||||| |||||
seq2  TCTCATCACGCCCCGTTTCCACTCC---TATTGACACAGTCTCA-TAAAT  46

seq1  G-ATTCAGGTTGGTCTCGAACTCACTCTGCTGTCCCGGCAGGCCTTGTAT  99
      | ||||| | || ||| ||||||   |||||||||| ||| |||||||||
seq2  GAATTCA-GATGTTCT-GAACTCCACCTGCTGTCCC-GCA-GCCTTGTAT  92

seq1  TTCTGATCCCTCTGACTCAGCCTCCTGAGTAG-CAGGGATTATAGGCCTG  148
      ||||||||||||||||||||||| |||||||| || ||  |||||| |||
seq2  TTCTGATCCCTCTGACTCAGCCT-CTGAGTAGACAAGGGATATAGG-CTG  140

seq1  TGCCATCAGGCCTGG-CACACTTTACACAAACATTG-AGCCAGGTTTCAC  196
      ||||||||||||||| ||||| |||||||||||||| |||||||||||||
seq2  TGCCATCAGGCCTGGCCACAC-TTACACAAACATTGAAGCCAGGTTTCAC  189

seq1  GTAAGCCTGATTGGCCTTGAACTCGATCACCC-GGGATGATATTGA-CTT  244
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GTAAGCCTGATTGGCCTTGAACTCGATCACCCGGGGATGATATTGACCTT  239

seq1  CTGATCCTCTCACCTTTACCTCCAGCTCACTGAGATTATAAATGTGCGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTCTCACCTTTACCTCCAGCTCACTGAGATTATAAATGTGCGCC  289

seq1  ACCACATCTGGTTTATACTGTGTTCAGGATTGAACCCAAGGCGTCATGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCTGGTTTATACTGTGTTCAGGATTGAACCCAAGGCGTCATGCA  339

seq1  CGCTAGGCAAGCACTCTAGAGGTCCCCATTCCCAGCGTCCCACCCCACCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGGCAAGCACTCTAGAGGTCCCCATTCCCAGCGTCCCACCCCACCC  389

seq1  CTTTGGACTGCACATTTGCTGTGTCTTTTCTACGGTTACATGTGTTTAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACTGCACATTTGCTGTGTCTTTTCTACGGTTACATGTGTTTAGA  439

seq1  TGTACAAATGTCACCATATCACCGTGGCCCAAGGAATCCACTCAGTGATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAATGTCACCATATCACCGTGGCCCAAGGAATCCACTCAGTGATG  489

seq1  TGTTATTTCAGTTTGTGGCCTCCGAGAACCAGGCTAGACCACAAACCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTCAGTTTGTGGCCTCCGAGAACCAGGCTAGACCACAAACCCAG  539

seq1  GCATGCAGGGGGGCTATACCATTGAGGTTTGTGTCAGTATGCCCTAGATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGGGGGGCTATACCATTGAGGTTTGTGTCAGTATGCCCTAGATG  589

seq1  GTCTCACAAGGACAAAACCACTTACCAGTGCATTTCTCAGAACATCTCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACAAGGACAAAACCACTTACCAGTGCATTTCTCAGAACATCTCTG  639

seq1  TGTTGTTAAGCAACATGCCATTGTATTTACCCTAGAGAAGAAATGAAAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAAGCAACATGCCATTGTATTTACCCTAGAGAAGAAATGAAAAC  689

seq1  TTTTCTTCCCACGAAACCTTGCCCTCAAATGTTCATAGCAGCTCTGCTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCACGAAACCTTGCCCTCAAATGTTCATAGCAGCTCTGCTTA  739

seq1  TAGTAGCGCACAGCCACAAACAACCCAGACATCTTTCAACGGATGAATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCGCACAGCCACAAACAACCCAGACATCTTTCAACGGATGAATGG  789

seq1  CTTACAGAGTAAGCAACATGCAACAACAGACTACTATTCCTCAGCGAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAGTAAGCAACATGCAACAACAGACTACTATTCCTCAGCGAAAG  839

seq1  GGTTGCGACTGTCACATGCGACAACTTGGATGGCACTCAAAGACATTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCGACTGTCACATGCGACAACTTGGATGGCACTCAAAGACATTTCT  889

seq1  ATTAAATGAGAGAAGGCTGCCAAAAGGTTACACACTGGATAATTTCATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAGAGAAGGCTGCCAAAAGGTTACACACTGGATAATTTCATTT  939

seq1  ATCTGACGGTCTGGAAAAGACAAAACTGCAGTGGTGGAAAATGTATCAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACGGTCTGGAAAAGACAAAACTGCAGTGGTGGAAAATGTATCAGT  989

seq1  GGTTGCCAGGGTTACTGGCGGGGTGAGGGTGTGTCTACAGAGGGGTAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCAGGGTTACTGGCGGGGTGAGGGTGTGTCTACAGAGGGGTAGCA  1039

seq1  CGAGGGAGCGCTTGAGGGTGATGGCATTGTTTTGATGGGGCTTACACAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGAGCGCTTGAGGGTGATGGCATTGTTTTGATGGGGCTTACACAAT  1089

seq1  TCTACACATGTGTTTGGATCTGTAGAACTGCAAAGCAGAAGATGAAAAGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACATGTGTTTGGATCTGTAGAACTGCAAAGCAGAAGATGAAAAGG  1139

seq1  GTGGGTTTTACTGTAGGAGAA  1165
      |||||||||||||||||||||
seq2  GTGGGTTTTACTGTAGGAGAA  1160

seq1: chr17_45855506_45855886
seq2: B6Ng01-115P11.g_67_447

seq1  GAATTCCCCTAGTGTGTGTGTACCATCACTCCCGTCCTGTTTTCCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAGTGTGTGTGTACCATCACTCCCGTCCTGTTTTCCCAGTA  50

seq1  GAGATGCAAAGTGAGGGCCAGAGAGCCAGAACCGGCTGAGGGGGGCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAAGTGAGGGCCAGAGAGCCAGAACCGGCTGAGGGGGGCGGCT  100

seq1  GGGAACAGAGCAGTCTGAGGTAATCTGGCCATCAGAGCTGTGGCTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGAGCAGTCTGAGGTAATCTGGCCATCAGAGCTGTGGCTGCTTC  150

seq1  TTGTGCAGAGTCTGGAAGGGTTCCACAGCCCACAGCCTGATCCCAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGAGTCTGGAAGGGTTCCACAGCCCACAGCCTGATCCCAGCCTG  200

seq1  TTCCAACTGAAGCCTACTTTGGCATCTGGCAAGAGCTCACTTGCCTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTGAAGCCTACTTTGGCATCTGGCAAGAGCTCACTTGCCTAGTC  250

seq1  CTCTACCACATAAACCCAACACAGTGGAGCATGCCTGTGGTCCCAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCACATAAACCCAACACAGTGGAGCATGCCTGTGGTCCCAGAAAT  300

seq1  TAAGAGGTAGAGACAGGAGATCCTGAGGTTCAAAGTCATCCTTGGCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTAGAGACAGGAGATCCTGAGGTTCAAAGTCATCCTTGGCTGGT  350

seq1  GAGGGTTATGGTTAGGGTTATGGTTAGGGTT  381
      |||||||||||||||||||||||||||||||
seq2  GAGGGTTATGGTTAGGGTTATGGTTAGGGTT  381