BAC Information

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BAC

Clone NameB6Ng01-116B20
Chromosome17 (Build37)
Map Location 41,282,371 - 41,283,402
singlet/doubletsinglet
Overlap genenone
Upstream genePgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
Downstream geneLOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116B20.bB6Ng01-116B20.g
ACCDH921197DH921198
length1,1701,033
definitionDH921197|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B20, 5' end.DH921198|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagtaatatcgaatggcagagaagcacctgaaaaaata
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcagaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaagaatgtggagaaagaggaacactcctccattgttggtg
ggatttcaagcttatacaaccactctggaaatcagtctggcggttactca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaataccactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgatacatggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaactcaa
gaagaatgaagacccacgtgtggacactctgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctctgatg
aaaggatggaccatctagagactgccatatcaggggatccatcccatagt
caggttccaaacgctgacaccattgcacacactagcaagatttttttgaa
aggaccctgatatagctgtctcttgtgagactagggccggggcctagcaa
acacataagtagatgctcacagtcagctattggatggatcacagggcctc
caatggaggagctagagaaagtacccaaggagctaaagggatctacaccc
tatagttgaacatattatgactaaccagtaccccggagctctgactctag
ctgcatatgtatcaaaagatggcctagtcggcatcgctgaaagagagggc
ctattgacttgcactttatatgccaatcaggcatgcaggtcaaaaatgaa
tggtggatagggtgttggga
gaattctttcttgctgaattttgccactacaagcaaaaagcaactgatac
tgtccttgtcattttatcttcacgtattcatgcttttatttttatgggta
ggtctcaggaaagatctaatgtcaaggatttattcaatatagatttcaaa
tatgcttcaagaatgcttttcgaaaacctccaagtctttacatttccagg
gaaaagacagtgctttaaccacaggcttcacacagtaagtggcatattct
ctcttctaagaaaatgtttgcagatctcataaggatagggaatcttttat
tgtttatctaatttgcattttgctgatgactgaagaaattgaatgtctta
tatgctcttctgatttttaaaataactgtcctatgaattattcaaacaat
agcctttgtccatttactcaagcagactttaagttctctgataaatttgt
aaggttcctttgtttgtcaaagtatatatgtgtgtgtgtgcacaaatatg
ggtgtgtgcatgatcatatatgtatgaattagtatgtgtgtgcatgtgta
tctgagtgggtttatgagtgtatgtgtatgcacgagtgtgtgtatattag
tctctatgtgcatgactatataaaatgtgtgtatatattatatgtgtatg
tttgtataattgcctatatttacaatcttcataataagcatgttaagaat
ctttttattaattttttttttttttgtaacttaggtatacaattgagtgt
aatttcttccaacatttataataattttcaaatatatttaagacatgttt
acttactaacggccataaaatcaccaataattttgtaagttttaattttt
acttacactactttccccttatttatgcattttatgtattatatattatt
gaattcacttacatttggatcacagccttcccccacagcaccctgtcaaa
cagccctttcaccattaagtgtcttctgaactgggaacatttatgtaact
actttgatctccttcctgtagaaaataaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41282371_41283402
seq2: B6Ng01-116B20.g_66_1098

seq1  GAATTCTTTCTTGCTGAATTTTGCCACTACAAGCAAAAAGCAACTGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGCTGAATTTTGCCACTACAAGCAAAAAGCAACTGATAC  50

seq1  TGTCCTTGTCATTTTATCTTCACGTATTCATGCTTTTATTTTTATGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGTCATTTTATCTTCACGTATTCATGCTTTTATTTTTATGGGTA  100

seq1  GGTCTCAGGAAAGATCTAATGTCAAGGATTTATTCAATATAGATTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGGAAAGATCTAATGTCAAGGATTTATTCAATATAGATTTCAAA  150

seq1  TATGCTTCAAGAATGCTTTTCGAAAACCTCCAAGTCTTTACATTTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCAAGAATGCTTTTCGAAAACCTCCAAGTCTTTACATTTCCAGG  200

seq1  GAAAAGACAGTGCTTTAACCACAGGCTTCACACAGTAAGTGGCATATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAGTGCTTTAACCACAGGCTTCACACAGTAAGTGGCATATTCT  250

seq1  CTCTTCTAAGAAAATGTTTGCAGATCTCATAAGGATAGGGAATCTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAAGAAAATGTTTGCAGATCTCATAAGGATAGGGAATCTTTTAT  300

seq1  TGTTTATCTAATTTGCATTTTGCTGATGACTGAAGAAATTGAATGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTAATTTGCATTTTGCTGATGACTGAAGAAATTGAATGTCTTA  350

seq1  TATGCTCTTCTGATTTTTAAAATAACTGTCCTATGAATTATTCAAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTTCTGATTTTTAAAATAACTGTCCTATGAATTATTCAAACAAT  400

seq1  AGCCTTTGTCCATTTACTCAAGCAGACTTTAAGTTCTCTGATAAATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGTCCATTTACTCAAGCAGACTTTAAGTTCTCTGATAAATTTGT  450

seq1  AAGGTTCCTTTGTTTGTCAAAGTATATATGTGTGTGTGTGCACAAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCTTTGTTTGTCAAAGTATATATGTGTGTGTGTGCACAAATATG  500

seq1  GGTGTGTGCATGATCATATATGTATGAATTAGTATGTGTGTGCATGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCATGATCATATATGTATGAATTAGTATGTGTGTGCATGTGTA  550

seq1  TCTGAGTGGGTTTATGAGTGTATGTGTATGCACGAGTGTGTGTATATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGGGTTTATGAGTGTATGTGTATGCACGAGTGTGTGTATATTAG  600

seq1  TCTCTATGTGCATGACTATATAAAATGTGTGTATATATTATATGTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGTGCATGACTATATAAAATGTGTGTATATATTATATGTGTATG  650

seq1  TTTGTATAATTGCCTATATTTACAATCTTCATAATAAGCATGTTAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAATTGCCTATATTTACAATCTTCATAATAAGCATGTTAAGAAT  700

seq1  CTTTTTATTAA-TTTTTTTCTTTTTGTAACTTAGGTATACAATTGAGTGT  749
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  CTTTTTATTAATTTTTTTTTTTTTTGTAACTTAGGTATACAATTGAGTGT  750

seq1  AATTTC-TCCAACATTTATAATAATTTTCAAATATTATTTAAGACATG-T  797
      |||||| ||||||||||||||||||||||||||| ||||||||||||| |
seq2  AATTTCTTCCAACATTTATAATAATTTTCAAATA-TATTTAAGACATGTT  799

seq1  TACTTACTAACGGCCATAAAATCACCAATAATTTTGTAAGTTTTAATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTAACGGCCATAAAATCACCAATAATTTTGTAAGTTTTAATTTT  849

seq1  TACTTACACTACTTTCCCCTTATTTATGCA-TTTATGTATTTATATATTT  896
      |||||||||||||||||||||||||||||| |||||||| ||||||| ||
seq2  TACTTACACTACTTTCCCCTTATTTATGCATTTTATGTA-TTATATA-TT  897

seq1  ATTTAATTCACTTTACATCTGGATCACAGCCTTCCCCCACAGCACCCTGT  946
      ||| ||||||| |||||| |||||||||||||||||||||||||||||||
seq2  ATTGAATTCAC-TTACATTTGGATCACAGCCTTCCCCCACAGCACCCTGT  946

seq1  CAAACAGCCCTTCCACCATTAAGTGTCCTCTGAACTGGGACAATTTATGT  996
      |||||||||||| |||||||||||||| ||||||||||||  ||||||||
seq2  CAAACAGCCCTTTCACCATTAAGTGTCTTCTGAACTGGGAACATTTATGT  996

seq1  AACTACTTTGTCCTTCTTCCTGTAG-AAATAAAAATG  1032
      ||||||||||  || |||||||||| |||||||||||
seq2  AACTACTTTGATCTCCTTCCTGTAGAAAATAAAAATG  1033