BAC Information

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BAC

Clone NameB6Ng01-116E03
Chromosome17 (Build37)
Map Location 19,992,702 - 20,123,895
singlet/doubletdoublet
Overlap geneLOC210465, LOC670534, EG627664
Upstream geneEG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273
Downstream geneV2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E03.bB6Ng01-116E03.g
ACCDH921300DH921301
length1,1231,103
definitionDH921300|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E03, 5' end.DH921301|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,122,759 - 20,123,895)(19,992,702 - 19,993,827)
sequence
gaattcatttactcatatccggaagaaaacacattctagaagaaagaatt
ctcctaaaatatagttgataaaaataaatttagctttaagttaacaactt
tataaaagggatcattcatatattattctaaaatatgttatacagttata
gttatgaatgcaattttataaggttttattcctttattcaactatattat
agtgttatagtattaagaccacttattttccatgtttgaaaaccacaact
tttctggtgattcaatatctctgagtcaaagacttgatacctgcattcct
gtatcatttcaaatttttatatctttacttgatagaaattcttcctcttc
atttactgtcttgatttcattgaacttcatgaatattcctcctactgcct
aaaataccaaaacatttagtttgggaagtgtattggaatagaatttctta
tggtccattaattaatcatacaaaatattaattgccatataagtagtgtt
taaaattattgtatatttgaggttcaccataccaggtttgaacctgaaca
acatggtatatgtaaaatataccaaggtatttacttactttaaaatgacc
tgtttgaatttatctttttttttacatttaaagccacagtctgtcataat
ttaaatgaaaggtttaataatgtaatagcattctagtcctggaattatat
tttgcattctatcttagtgtgaaggttcatttagaaatgcattttattga
ccaaagtgaaatatgagtcagagaacaatccatttagagcccatattcat
catttgaaaaaaatttattacatgtccagctatttgaaagttagctgact
accctaacatgcttttaaatttagatatttacacatatattatatagtat
ttgcctttcttgtgattcaaattatctgaaattgctgttgtcacaactag
ttcatgttgaatttttgtattattctctaatataaactgttatttaattt
tattcatttaatttctctcattacatttttatatattggtataaaaatag
taaatcaaatcaaaattgctcaacttcatttatacacccaattctctaat
atcattattatttgaatatattt
gaattcattggttccatgaggttattgctaacctctggttcttagtttct
ttccagtgcttttgacataaatttgtaagcactgggagagaagataaagt
tttacagtaaaatttattgaacctcttttctgtggtccactttgacagag
ataataagtagtattcttttataggtgaggattggggcccttttgcaaga
aaatgtatttttttccgcaaaagttactattaaactgatgaagagatgtt
ttagagaatagaatacatattcataactctcaaaagaatatgagtgcatg
tccagtgatcatatggaagataggagattgaaaataagagaatctctaca
agtttgctctgaagatacctaggcaaatgttataagaaaataaagaaaac
cagaaggtagatatcctagtgcaagactttattcccagtagtctagaaaa
agagatggatggttattcacatcttgatatacacaacaacttatagtcaa
gtcatagacactatgttactgagttattgttacagaatattaattgaatg
aaacgtataaatgcataagtgcattaataaataaattaatgaacaaataa
ataaaatatactgtaagaaaggtgaatagttcaaaatcaacctgtagttg
catttacttgaatttatactttcagaatttcatacaactgtatattctaa
gagacatgcctgcatgcagttacacataaaaacaccataaatatatatat
gatgaaaatataaatgaatggtacttcattcatttaatctcatttattca
gatacagaagcaggcttttctatggcttttctatgacaataatacatcca
tgctcacatactcaaaaaattatattagagaaatagctacagtggacaca
tgcaaagaaatgaacttcagggtattattttagttaagatatatcttttt
gtcccgtccagcagacccagtttttcgtggtatgagaggactgcaaactt
gcagaataaatagtggaaggaagaagtgaagacagaggttctgtcaagtc
tcagtatagctgaaataccagtatagcacacagcaaagggaaatatgagg
ggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20122759_20123895
seq2: B6Ng01-116E03.b_47_1169 (reverse)

seq1  AAATATATCAAAATAATAATGAATATTAGAGGAATGGGTTGTAATAAAAT  50
      ||||||||  ||||||||||| |||||||| |||| || ||| |||||  
seq2  AAATATATTCAAATAATAATG-ATATTAGA-GAATTGGGTGT-ATAAA--  45

seq1  GGAAGGCCCTGAGCAATTTTGGATTTTGATTTACTA-TTTTATACCAATA  99
       ||||    ||||||||||||   |||||||||||| |||||||||||||
seq2  TGAAG---TTGAGCAATTTTG--ATTTGATTTACTATTTTTATACCAATA  90

seq1  TATAAAAAATGTAATGAGAGAAAATTAAATGAATAAAATTAAAATAAACA  149
      ||| |||||||||||||||| ||||||||||||||||||||||   ||||
seq2  TAT-AAAAATGTAATGAGAG-AAATTAAATGAATAAAATTAAA--TAACA  136

seq1  GTTTATATTAGAGAATAATACAAAAATTCAACATGAACTAGTTGTGACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTAGAGAATAATACAAAAATTCAACATGAACTAGTTGTGACAA  186

seq1  CAGCAATTTTCAGATAATTTGAATCACAAGAAAGGCAAATACTATATAAT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAA-TTTCAGATAATTTGAATCACAAGAAAGGCAAATACTATATAAT  235

seq1  ATATGTGTAAATATCTAAATTTAAAAGCATGTTAGGGTAGTCAGCTAACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTAAATATCTAAATTTAAAAGCATGTTAGGGTAGTCAGCTAACT  285

seq1  TTCAAATAGCTGGACATGTAATAAATTTTTTTCAAATGATGAATATGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAGCTGGACATGTAATAAATTTTTTTCAAATGATGAATATGGGC  335

seq1  TCTAAATGGATTGTTCTCTGACTCATATTTCACTTTGGTCAATAAAATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGGATTGTTCTCTGACTCATATTTCACTTTGGTCAATAAAATGC  385

seq1  ATTTCTAAATGAACCTTCACACTAAGATAGAATGCAAAATATAATTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAATGAACCTTCACACTAAGATAGAATGCAAAATATAATTCCAG  435

seq1  GACTAGAATGCTATTACATTATTAAACCTTTCATTTAAATTATGACAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAATGCTATTACATTATTAAACCTTTCATTTAAATTATGACAGAC  485

seq1  TGTGGCTTTAAATGTAAAAAAAAAGATAAATTCAAACAGGTCATTTTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTAAATGTAAAAAAAAAGATAAATTCAAACAGGTCATTTTAAA  535

seq1  GTAAGTAAATACCTTGGTATATTTTACATATACCATGTTGTTCAGGTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAATACCTTGGTATATTTTACATATACCATGTTGTTCAGGTTCA  585

seq1  AACCTGGTATGGTGAACCTCAAATATACAATAATTTTAAACACTACTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTATGGTGAACCTCAAATATACAATAATTTTAAACACTACTTAT  635

seq1  ATGGCAATTAATATTTTGTATGATTAATTAATGGACCATAAGAAATTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATTAATATTTTGTATGATTAATTAATGGACCATAAGAAATTCTA  685

seq1  TTCCAATACACTTCCCAAACTAAATGTTTTGGTATTTTAGGCAGTAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATACACTTCCCAAACTAAATGTTTTGGTATTTTAGGCAGTAGGAG  735

seq1  GAATATTCATGAAGTTCAATGAAATCAAGACAGTAAATGAAGAGGAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCATGAAGTTCAATGAAATCAAGACAGTAAATGAAGAGGAAGAA  785

seq1  TTTCTATCAAGTAAAGATATAAAAATTTGAAATGATACAGGAATGCAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCAAGTAAAGATATAAAAATTTGAAATGATACAGGAATGCAGGT  835

seq1  ATCAAGTCTTTGACTCAGAGATATTGAATCACCAGAAAAGTTGTGGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTTTGACTCAGAGATATTGAATCACCAGAAAAGTTGTGGTTTT  885

seq1  CAAACATGGAAAATAAGTGGTCTTAATACTATAACACTATAATATAGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGGAAAATAAGTGGTCTTAATACTATAACACTATAATATAGTTG  935

seq1  AATAAAGGAATAAAACCTTATAAAATTGCATTCATAACTATAACTGTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGAATAAAACCTTATAAAATTGCATTCATAACTATAACTGTATA  985

seq1  ACATATTTTAGAATAATATATGAATGATCCCTTTTATAAAGTTGTTAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTAGAATAATATATGAATGATCCCTTTTATAAAGTTGTTAACT  1035

seq1  TAAAGCTAAATTTATTTTTATCAACTATATTTTAGGAGAATTCTTTCTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAAATTTATTTTTATCAACTATATTTTAGGAGAATTCTTTCTTC  1085

seq1  TAGAATGTGTTTTCTTCCGGATATGAGTAAATGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTGTTTTCTTCCGGATATGAGTAAATGAATTC  1123

seq1: chr17_19992702_19993827
seq2: B6Ng01-116E03.g_68_1170

seq1  GAATTCATTGGTTCCATGAGGTTATTGCTAACCTCTGGTTCTTAGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTTCCATGAGGTTATTGCTAACCTCTGGTTCTTAGTTTCT  50

seq1  TTCCAGTGCTTTTGACATAAATTTGTAAGCACTGGGAGAGAAGATAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGCTTTTGACATAAATTTGTAAGCACTGGGAGAGAAGATAAAGT  100

seq1  TTTACAGTAAAATTTATTGAACCTCTTTTCTGTGGTCCACTTTGACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAAAATTTATTGAACCTCTTTTCTGTGGTCCACTTTGACAGAG  150

seq1  ATAATAAGTAGTATTCTTTTATAGGTGAGGATTGGGGCCCTTTTGCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGTAGTATTCTTTTATAGGTGAGGATTGGGGCCCTTTTGCAAGA  200

seq1  AAATGTATTTTTTTCCGCAAAAGTTACTATTAAACTGATGAAGAGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTTTTTCCGCAAAAGTTACTATTAAACTGATGAAGAGATGTT  250

seq1  TTAGAGAATAGAATACATATTCATAACTCTCAAAAGAATATGAGTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATAGAATACATATTCATAACTCTCAAAAGAATATGAGTGCATG  300

seq1  TCCAGTGATCATATGGAAGATAGGAGATTGAAAATAAGAGAATCTCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATCATATGGAAGATAGGAGATTGAAAATAAGAGAATCTCTACA  350

seq1  AGTTTGCTCTGAAGATACCTAGGCAAATGTTATAAGAAAATAAAGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTCTGAAGATACCTAGGCAAATGTTATAAGAAAATAAAGAAAAC  400

seq1  CAGAAGGTAGATATCCTAGTGCAAGACTTTATTCCCAGTAGTCTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTAGATATCCTAGTGCAAGACTTTATTCCCAGTAGTCTAGAAAA  450

seq1  AGAGATGGATGGTTATTCACATCTTGATATACACAACAACTTATAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGATGGTTATTCACATCTTGATATACACAACAACTTATAGTCAA  500

seq1  GTCATAGACACTATGTTACTGAGTTATTGTTACAGAATATTAATTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGACACTATGTTACTGAGTTATTGTTACAGAATATTAATTGAATG  550

seq1  AAACGTATAAATGCATAAGTGCATTAATAAATAAATTAATGAACAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTATAAATGCATAAGTGCATTAATAAATAAATTAATGAACAAATAA  600

seq1  ATAAAATATACTGTAAGAAAGGTGAATAGTTCAAAATCAACCTGTAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATACTGTAAGAAAGGTGAATAGTTCAAAATCAACCTGTAGTTG  650

seq1  CATTTACTTGAATTTATACTTTCAGAATTTCATACAACTGTATATTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTGAATTTATACTTTCAGAATTTCATACAACTGTATATTCTAA  700

seq1  GAGACATGCCTGCATGCAGTTACACATAAAAACACCATAAATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGCCTGCATGCAGTTACACATAAAAACACCATAAATATATATAT  750

seq1  GATGAAAATATAAATGAATGGTACTTCATTCATTTAATCTCATTTATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAATATAAATGAATGGTACTTCATTCATTTAATCTCATTTATTCA  800

seq1  GATACAGAAGCAGGCTTTTCTATGGCTTTTCTATGACAATAATACATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAAGCAGGCTTTTCTATGGCTTTTCTATGACAATAATACATCCA  850

seq1  TGCTCACATACTCAAAAAATTATATTAGAGAAATAGCTACAGTGGACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATACTCAAAAAATTATATTAGAGAAATAGCTACAGTGGACACA  900

seq1  TGCAAAGAAATGAACTTCAGGGTATTA-TTTAGTTAAGATATATCTTTTT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCAAAGAAATGAACTTCAGGGTATTATTTTAGTTAAGATATATCTTTTT  950

seq1  GTCCCGTCCAGCAGGACCCAGTTTTTCGTGGGTATGAGAGGGACTGCAAA  999
      ||||||||||||| ||||||||||||||| ||||||||| ||||||||||
seq2  GTCCCGTCCAGCA-GACCCAGTTTTTCGT-GGTATGAGA-GGACTGCAAA  997

seq1  CCTGCAAGATAAATAGGTGGAAGGGAAAGAAAGGAGAAGACCAAGGAGGG  1049
      | ||||  ||||||| ||||||||  |||||  | ||||||     || |
seq2  CTTGCAGAATAAATA-GTGGAAGG--AAGAA--GTGAAGAC-----AGAG  1037

seq1  TTCCTGTCAAGGTCTCAGTTTATTAGGCTGAAAATACCAGGTTATAAGCA  1099
       | ||||||| |||||||| ||    |||| |||||||||  ||| ||||
seq2  GTTCTGTCAA-GTCTCAGTATA----GCTG-AAATACCAG--TAT-AGCA  1078

seq1  CACAGCAAAGGGAAAATAGGGAGGGGT  1126
      |||||||||||| |||||  |||||||
seq2  CACAGCAAAGGG-AAATA-TGAGGGGT  1103