BAC Information

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BAC

Clone NameB6Ng01-116L22
Chromosome17 (Build37)12 (Build37)
Map Location 42,053,649 - 42,054,16979,720,698 - 79,721,213
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116L22.bB6Ng01-116L22.g
ACCDH921666DH921667
length952523
definitionDH921666|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L22, 5' end.DH921667|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,053,649 - 42,054,169)(79,720,698 - 79,721,213)
sequence
gaattcttcactaaacccatctggtcctgggctttttttggtggggagac
cattaatgactgcttctatttctttaggtgatatgggactgtttagatcc
ttaacttgatcctcgtttaaatttggtacctggtatctgtccagaaattt
gtccatttcatcaaggttttccaattttgttgagtatagccatttgtaga
aggatctgatggtgttttggatttcttcaggttttgttgttatgtctccc
ttttcatttctgattttgttaattaggatgctgtccctgtgccctctagt
gagtctggctaatggtttatctatcttgttgattttctcaaagaaccagc
tactcgtttggttgattatttgaatagttcttcttgtttccacttggttg
atttcccccctgagtttgattatttcctgccgtctactcctcttgggtaa
atttgcttcctttttttctagagcttttaggtgtgttgtcaagctgctag
tgtgtgctctctctagtttctttttggaggcactcagagctacgagtttc
cctcttagaaatgctttcatagtctcccataagattgggtatgttgtggc
ttcgttttcattaaactctaaaaagtctttaatttctttctttattcctt
ccttgaccaaggtatcattgagaagagtgttgttcagtttccacgtgaat
gttggctttccattatttatgttgttattgaagatcagccttaggccatg
gtggtctgataggatgcatggggcaatttcaatattttttatctgttgag
gcctgttttgtgaccaattatatggtcaattttggagaaggtctcgtgag
gtgctgagaagaaggtatatcctttttttttttaggataaaatgttctgt
agaaatctgttaagtccatttggtttcttaacttctgttagtttcactgt
gt
tagagaaaaactggaattagatcttctttgaaagtctgacagaatcagca
ctaacctatgtggtcctgggctttttttggttgggagactattaatgact
gcttctatttctttagggaatataggactgtttagatcattaaactgatc
ctatttaattttgttagctggtagctgtctagaaatttgtccatttggtc
cagtttttccagttttgttgaaaatagcttttgtagaaagatatcatgct
gctttggatttcttcaggatctgttgttatgtctcccttttcatttctga
ttttgttaattatgatgctgtccctgtgccctctagtgagtctggctaag
ggtttatctttcatgttgattttcatcaaagaaccagatcctcatttggt
tgatactttgaatagttcttgtttccacttggttgatttctcgccttagt
ttgattattccctgccattgactcctcttggttgaatttgcttccttttg
tgctataagcttttaggtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42053649_42054169
seq2: B6Ng01-116L22.b_475_997 (reverse)

seq1  ACACAGTGAAACTAACAGAAGTTATGAAA-CAAATGGACCTGACAGATAT  49
      |||||||||||||||||||||||| |||| ||||||||| | |||||| |
seq2  ACACAGTGAAACTAACAGAAGTTAAGAAACCAAATGGACTTAACAGATTT  50

seq1  CTACAGAACATTTTATCCT--AAAACAAAAGGATATACCTTCTTCTCAGC  97
      |||||||||||||||||||  |||| ||||||||||||||||||||||||
seq2  CTACAGAACATTTTATCCTAAAAAAAAAAAGGATATACCTTCTTCTCAGC  100

seq1  ACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAG  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACGAGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAG  150

seq1  GCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGAC  197
      ||||||| ||||| |||||||||||||||| |||||| ||||||||||||
seq2  GCCTCAACAGATA-AAAAATATTGAAATTGCCCCATGCATCCTATCAGAC  199

seq1  CACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCC  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACCATGGCCTAAGGCTGATCTTCAATAACAACATAAATAATGGAAAGCC  249

seq1  AACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCA  297
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCA  299

seq1  AGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAAC  349

seq1  GAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAG  397
      ||||||||||| ||||||| | ||||||| || |||||||||||||||||
seq2  GAAGCCACAACATACCCAATCTTATGGGAGACTATGAAAGCATTTCTAAG  399

seq1  AGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCAC  447
      |||||||||| ||||||||||||||||||| |||||||  |||| |||||
seq2  AGGGAAACTCGTAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCAC  449

seq1  ATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCA  497
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAAAAAAAGGAAGCA  499

seq1  AATTCACCCAAGAGGAGTAGACGG  521
      |||| |||||||||||||||||||
seq2  AATTTACCCAAGAGGAGTAGACGG  523

seq1: chr12_79720698_79721213
seq2: B6Ng01-116L22.g_83_597 (reverse)

seq1  AACACACCTAAAAGC-TCTAGAACAAAAGGAAGCAAATTCACCCAAGAGG  49
      ||||||||||||||| | ||| ||||||||||||||||||| ||||||||
seq2  AACACACCTAAAAGCTTATAGCACAAAAGGAAGCAAATTCAACCAAGAGG  50

seq1  AGTAGACGGCAAGAAATAATCAAACTCAGGGGCGAAATCAACCAAGTGGA  99
      |||  | |||| | |||||||||||| ||| | |||||||||||||||||
seq2  AGTCAATGGCAGGGAATAATCAAACTAAGGCGAGAAATCAACCAAGTGGA  100

seq1  AACAAGAAGAACTATTCAAAGAATCAACCAATCCAGGAGCTGGTTCTTTG  149
      |||   ||||||||||||||| |||||||||   |||| |||||||||||
seq2  AAC---AAGAACTATTCAAAGTATCAACCAAATGAGGATCTGGTTCTTTG  147

seq1  A-GAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCA  198
      | ||||||||||| || |||||||||||||||||||||||||||||||||
seq2  ATGAAAATCAACATGAAAGATAAACCCTTAGCCAGACTCACTAGAGGGCA  197

seq1  CAGGGACAACATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAA  248
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGCATCATAATTAACAAAATCAGAAATGAAAAGGGAGACATAA  247

seq1  CAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAG  298
      |||||||||||||||||||||||| || ||| | ||| |||||| |||||
seq2  CAACAGATCCTGAAGAAATCCAAAGCAGCATGATATCTTTCTAC-AAAAG  296

seq1  CTATACTCAACAAAACTGGAAAACCTGGATAAAATGGACAAATTTCTAGA  348
      ||||  ||||||||||||||||| |||||  |||||||||||||||||||
seq2  CTATTTTCAACAAAACTGGAAAAACTGGACCAAATGGACAAATTTCTAGA  346

seq1  CAGATACTAGGTACCAAAGTTAAATCAGAATCAGGTTAATGATCTAAACA  398
      ||| ||| || || |||| |||||| || ||||| |||||||||||||||
seq2  CAGCTACCAGCTAACAAAATTAAAT-AGGATCAGTTTAATGATCTAAACA  395

seq1  GTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTTTC----CC  444
      ||||||||| ||||||||||||||||||||||||||||||| ||    ||
seq2  GTCCTATATTCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACC  445

seq1  AAAAAAAGCCCAAAACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTT  494
      ||||||||||||  |||| || || ||||||| || |||| |||||| ||
seq2  AAAAAAAGCCCAGGACCACATAGG-TTAGTGCTGA-TTCTGTCAGACTTT  493

seq1  CAAAGAAGATCTAATTCCAGTT  516
      ||||||||||||||||||||||
seq2  CAAAGAAGATCTAATTCCAGTT  515