BAC Information

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BAC

Clone NameB6Ng01-117M10
Chromosome17 (Build37)
Map Location 26,680,586 - 26,811,090
singlet/doubletdoublet
Overlap geneEG666668, Ergic1
Upstream geneLOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1
Downstream geneAtp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117M10.bB6Ng01-117M10.g
ACCDH922428DH922429
length844184
definitionDH922428|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M10, 5' end.DH922429|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,810,502 - 26,811,090)(26,680,586 - 26,680,769)
sequence
gaattccctgcacaacttgcaagcagcttggttggccagtttcctaccct
gagcaattgttactgttcatacaacttgtggaaggggtcttgtgagtctt
gtaactttcagaggattcctgagtcttctttgtttcctttacttcctgtc
tgagccttgttccaggggaatgttcacacagcatacagtaaggagctatg
tgatggttttctttgcttcttttaaaagatttattctatgttgccaagtg
tgctaatacatgcctttaatcctaccacttgggggggtggggtgggcaga
agcaggagaatctctgtgttcaagaccagcttggtctataaagcaaattc
caggacagccagggctacacagagcctctctctcaaaaaaacaagacaaa
acttcaaaaagattttttgtttgcaaatattttttgtctgcatgtatgtc
tatgcaacagatgtatgcctagtgcccttgaaaatcagaagagggtattg
gataccctggtactggaattatagatgattgtgagctgccataggggttg
ctgggaaacaaacatgggtccttcgcaagagcaacaaatgcttttatcca
ctgagccatctctacagccccttctttatgtgatgagtattttatccata
aggtttcttattttaagtgacaaaatctattaagatgggggaaggagaag
aggcttacataacatattcaaaagacaacacagtagacaagccacaaaaa
ccaaagtgtaggtggccctttcttcatcagaccactctgggtcacatata
tatgtgagatttgggtgtacctctgcgaggccagagatcaccgt
actgatcaccttgtgaaaacccacaccagagtctctgttcagaggacgca
ggctccagttgtggctaccacataagggtttttatacaagaaaaataaat
gaattaagtctgtttttaaaagataggaataataagatggatgctatata
tgctttcacatggtcccgggggggggggggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26810502_26811090
seq2: B6Ng01-117M10.b_300_889 (reverse)

seq1  ACGGTGCTCTCTGGCCTCTGCAGAGGTACACAC-AATCTCACATATATAT  49
      |||||| ||||||||||| |||||||||||| | ||||||||||||||||
seq2  ACGGTGATCTCTGGCCTC-GCAGAGGTACACCCAAATCTCACATATATAT  49

seq1  GTGACCCAGTGTGGTCTGATGTAGAAAGGGCCACCTACACTTTGG-TTTT  98
      ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
seq2  GTGACCCAGAGTGGTCTGATGAAGAAAGGGCCACCTACACTTTGGTTTTT  99

seq1  GTGGCTTGTCTACTGTGTTGTCTTTTGAATATGTTATGTAAGCCTCTTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTCTACTGTGTTGTCTTTTGAATATGTTATGTAAGCCTCTTCT  149

seq1  CCTTCCCCCATCTTAATAGATTTTGTCACTTAAAATAAGAAACCTTATGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCATCTTAATAGATTTTGTCACTTAAAATAAGAAACCTTATGG  199

seq1  ATAAAATACTCATCACATAAAGAAGGGGCTGTAGAGATGGCTCAGTGGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACTCATCACATAAAGAAGGGGCTGTAGAGATGGCTCAGTGGAT  249

seq1  AAAAGCATTTGTTGCTCTTGCGAAGGACCCATGTTTGTTTCCCAGCAACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTTGTTGCTCTTGCGAAGGACCCATGTTTGTTTCCCAGCAACC  299

seq1  CCTATGGCAGCTCACAATCATCTATAATTCCAGTACCAGGGTATCCAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCAGCTCACAATCATCTATAATTCCAGTACCAGGGTATCCAATA  349

seq1  CCCTCTTCTGATTTTCAAGGGCACTAGGCATACATCTGTTGCATAGACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGATTTTCAAGGGCACTAGGCATACATCTGTTGCATAGACAT  399

seq1  ACATGCAGACAAAAAATATTTGCAAACAAAAAATCTTTTTGAAGTTTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGACAAAAAATATTTGCAAACAAAAAATCTTTTTGAAGTTTTGT  449

seq1  CTTGTTTTTTTGAGAGAGAGGCTCTGTGTAGCCCTGGCTGTCCTGGAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTTTGAGAGAGAGGCTCTGTGTAGCCCTGGCTGTCCTGGAATT  499

seq1  TGCTTTATAGACCAAGCTGGTCTTGAACACAGAGATTCTCCTGCTTCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATAGACCAAGCTGGTCTTGAACACAGAGATTCTCCTGCTTCTGC  549

seq1  CCACCCCACCCCCCCAAGTGGTAGGATTAAAGGCATGTATT  589
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCCCCAAGTGGTAGGATTAAAGGCATGTATT  590

seq1: chr17_26680586_26680769
seq2: B6Ng01-117M10.g_73_256

seq1  ACTGATCACCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCACCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACGCA  50

seq1  GGCTCCAGTTGTGGCTACCACATAAGGGTTTTTATACAAGAAAAATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGTTGTGGCTACCACATAAGGGTTTTTATACAAGAAAAATAAAT  100

seq1  GAATTAAGTCTGTTTTTAAAAGATAGGAATAATAAGATGGATGCTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGTCTGTTTTTAAAAGATAGGAATAATAAGATGGATGCTATATA  150

seq1  TGCTTTCACATGGTCCCGGGGGGGGGGGGGAAGA  184
      ||||||||||||||||||||||||||||||||||
seq2  TGCTTTCACATGGTCCCGGGGGGGGGGGGGAAGA  184