BAC Information

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BAC

Clone NameB6Ng01-118E16
Chromosome17 (Build37)
Map Location 23,615,282 - 23,741,917
singlet/doubletdoublet
Overlap geneEG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775
Downstream geneLOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E16.bB6Ng01-118E16.g
ACCDH922810DH922811
length1,155780
definitionDH922810|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E16, 5' end.DH922811|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,615,282 - 23,616,432)(23,741,141 - 23,741,917)
sequence
gaattctttacacatataattagggagaatatcatgattttgtaaactca
aatgaatgaaactgttatatttggatttccagtgacagttgtagtttgag
aatttaaatgttagagacatatttggcaaaatatcagggtttctgttgat
ttcatatatggaaaaagccaaagccagagcatacttgtggttttcagtat
gagttctataaaaggttacagtgtttataattgacagcaatttacagata
acattttgtagtcaataaaaggacaattctccagtggattttattgtccc
caccccataaagattgaaatgatctgtgtaatgtggttgagatgacaaag
aagctggaagttcattaaaccttgaaaggttcatgaaaggtcatctttca
taaatgagatgttaccactattagtaataacatcacttttcaaaaaacac
aaacagatcccttatagtccatatattgcatccttattctaaagagagaa
agtaaagaactggactttgtaagttgttaaagccaacgcatttgtacaga
tcaaaatataaacttcacagtgaacagctatcttagttcaatttttgatg
cagcatctgtacataaacagggaccacatggaggaaatttaagaaagtgg
atgaatatgcacagctatgtgtgtctccaatattaatggccccaaaacat
gcacgagaatctacactgagatggaaggaccatcagaaaactctatggcc
atttgcctaaacacatagggtaaaatagtagaaaatttatgggcattctt
ttgataagataccattggttgtgaaatggaaactgcctaggagaggtatt
tatgtgacatatacaggtccagatttgttttattgctgagtttccatttc
ctaagtgtgaggctgattaaaaaaatactctatcatttaaattggttaat
atatcattaagttgctaaaattttttctagctctttcctgttatggaaaa
gcctcatagctttgctttgcttcttcatcctcagtagtcttgggaaacat
tcatgatgactgtacatggaaaacacaaaaagcacttactgtatattcat
atatgactaaaaatactcttttctcacaggcggttgttactgcatgaatt
atgaa
gaattccagccagggatacacagagaaaccctctcttgaaaaaccagaaa
aaaaaaaaattaatgtggctttctgaggagtcctttccttttatcaaggg
tgatcactcacagcagaaggtgaaaacagagtaatcatgcaagggcaaaa
aaatcagggagggctgaaggggctgtgattcagtaggtgagagctcgccc
agcatgctagcaccgcataaactgggcatagtgaggcaggcctacagaca
gaaacaggaggcaagaagaccaggagtcccaggtcaccctcagcagctat
ataacaagtcttaggctagtctggggtggggtggaattggcaaaggtggg
gatgtagataggtggcgatcgagagcgcttgccatgaaagccgtggctca
gagctcggatctcagtatccacagaacaagcaagaaatgttcccatacat
ttctgacctaccaatgttggaggcagagacaggaggattggtgggaaaga
ccaaggcccaggaagatatctaacccaaaggacagttagttagagctagc
cagcagttagagtggggcatcccagtgctgtcttttctttgcattcctat
aggtgtgcacatatggggccatatgcaccacacacattctcacaaacaga
aactggacctttctggatgattgtcctattgtacacccatagagatgtgg
tgtgaccttttaccttgccctattaatgcatccactaggggctctgtgga
aaagagacttatggagaaaatcatttcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23615282_23616432
seq2: B6Ng01-118E16.b_45_1199

seq1  GAATTCTTTACACATATAATTAGGGAGAATATCATGATTTTGTAAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACACATATAATTAGGGAGAATATCATGATTTTGTAAACTCA  50

seq1  AATGAATGAAACTGTTATATTTGGATTTCCAGTGACAGTTGTAGTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAAACTGTTATATTTGGATTTCCAGTGACAGTTGTAGTTTGAG  100

seq1  AATTTAAATGTTAGAGACATATTTGGCAAAATATCAGGGTTTCTGTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATGTTAGAGACATATTTGGCAAAATATCAGGGTTTCTGTTGAT  150

seq1  TTCATATATGGAAAAAGCCAAAGCCAGAGCATACTTGTGGTTTTCAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATGGAAAAAGCCAAAGCCAGAGCATACTTGTGGTTTTCAGTAT  200

seq1  GAGTTCTATAAAAGGTTACAGTGTTTATAATTGACAGCAATTTACAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTATAAAAGGTTACAGTGTTTATAATTGACAGCAATTTACAGATA  250

seq1  ACATTTTGTAGTCAATAAAAGGACAATTCTCCAGTGGATTTTATTGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTAGTCAATAAAAGGACAATTCTCCAGTGGATTTTATTGTCCC  300

seq1  CACCCCATAAAGATTGAAATGATCTGTGTAATGTGGTTGAGATGACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATAAAGATTGAAATGATCTGTGTAATGTGGTTGAGATGACAAAG  350

seq1  AAGCTGGAAGTTCATTAAACCTTGAAAGGTTCATGAAAGGTCATCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAGTTCATTAAACCTTGAAAGGTTCATGAAAGGTCATCTTTCA  400

seq1  TAAATGAGATGTTACCACTATTAGTAATAACATCACTTTTCAAAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGATGTTACCACTATTAGTAATAACATCACTTTTCAAAAAACAC  450

seq1  AAACAGATCCCTTATAGTCCATATATTGCATCCTTATTCTAAAGAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATCCCTTATAGTCCATATATTGCATCCTTATTCTAAAGAGAGAA  500

seq1  AGTAAAGAACTGGACTTTGTAAGTTGTTAAAGCCAACGCATTTGTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAACTGGACTTTGTAAGTTGTTAAAGCCAACGCATTTGTACAGA  550

seq1  TCAAAATATAAACTTCACAGTGAACAGCTATCTTAGTTCAATTTTTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATAAACTTCACAGTGAACAGCTATCTTAGTTCAATTTTTGATG  600

seq1  CAGCATCTGTACATAAACAGGGACCACATGGAGGAAATTTAAGAAAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGTACATAAACAGGGACCACATGGAGGAAATTTAAGAAAGTGG  650

seq1  ATGAATATGCACAGCTATGTGTGTCTCCAATATTAATGGCCCCAAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGCACAGCTATGTGTGTCTCCAATATTAATGGCCCCAAAACAT  700

seq1  GCACGAGAATCTACACTGAGATGGAAGGACCATCAGAAAACTCTATGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGAGAATCTACACTGAGATGGAAGGACCATCAGAAAACTCTATGGCC  750

seq1  ATTTGCCTAAACACATAGGGTAAAATAGTAGAAAATTTATGGGCATTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTAAACACATAGGGTAAAATAGTAGAAAATTTATGGGCATTCTT  800

seq1  TTGATAAGATACCATTGGTTGTGAAATGGAAACTGCCTAGGAGAGGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGATACCATTGGTTGTGAAATGGAAACTGCCTAGGAGAGGTATT  850

seq1  TATGTGACATATACAGGTCCAGATTTGTTTTATTGCTGAGTTTCCA-TTC  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGTGACATATACAGGTCCAGATTTGTTTTATTGCTGAGTTTCCATTTC  900

seq1  CTAAGTGTGAGGCTGATTAAAAAAATACTCTATCAATTTAAATTGG-TAA  948
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  CTAAGTGTGAGGCTGATTAAAAAAATACTCTATC-ATTTAAATTGGTTAA  949

seq1  TATATCATTAAGTTGCTAAAAATATTTCTAGCTCTTTCCTGTTATGGAAA  998
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  TATATCATTAAGTTGCTAAAATTTTTTCTAGCTCTTTCCTGTTATGGAAA  999

seq1  AGCCTCATAGCTTTGCTTTGC-TCCTCATCCTCAGTAGTCTTGGGAAACA  1047
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  AGCCTCATAGCTTTGCTTTGCTTCTTCATCCTCAGTAGTCTTGGGAAACA  1049

seq1  TTCATGATGACTGTACATGGAAAACAC-AAAAGCACTTACTGTATATTCA  1096
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TTCATGATGACTGTACATGGAAAACACAAAAAGCACTTACTGTATATTC-  1098

seq1  ATATATGACT-AAAATACTCTTTCTCCACAGGCCGTTG-TACTGCATGAA  1144
      |||||||||| ||||||||||||   ||||||| |||| |||||||||||
seq2  ATATATGACTAAAAATACTCTTTTCTCACAGGCGGTTGTTACTGCATGAA  1148

seq1  TCATGAA  1151
      | |||||
seq2  TTATGAA  1155

seq1: chr17_23741141_23741917
seq2: B6Ng01-118E16.g_68_847 (reverse)

seq1  GATGAAATGATTTTCTCC-TTAGTCTCTCTTCCACAGAGCCCCTAGTGGA  49
      |||||||||||||||||| | ||||||| |||||||||||||||||||||
seq2  GATGAAATGATTTTCTCCATAAGTCTCTTTTCCACAGAGCCCCTAGTGGA  50

seq1  TGCATTAATAGGGC-AGGTAAAAGGTCACACCACATCTCTATGGGTGTAC  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCATTAATAGGGCAAGGTAAAAGGTCACACCACATCTCTATGGGTGTAC  100

seq1  AATAGGACAATCATCCAGAAAGGTCCAGTTTCTGTTTGTGAGAATGTGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGACAATCATCCAGAAAGGTCCAGTTTCTGTTTGTGAGAATGTGTG  150

seq1  TGGTGCATATGGCCCCATATGTGCACACCTATAGGAATGCAAAG-AAAGA  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTGCATATGGCCCCATATGTGCACACCTATAGGAATGCAAAGAAAAGA  200

seq1  CAGCACTGGGATGCCCCACTCTAACTGCTGGCTAGCTCTAACTAACTGTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGATGCCCCACTCTAACTGCTGGCTAGCTCTAACTAACTGTC  250

seq1  CTTTGGGTTAGATATCTTCCTGGGCCTTGGTCTTTCCCACCAATCCTCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTAGATATCTTCCTGGGCCTTGGTCTTTCCCACCAATCCTCCT  300

seq1  GTCTCTGCCTCCAACATTGGTAGGTCAGAAATGTATGGGAACATTTCTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCTCCAACATTGGTAGGTCAGAAATGTATGGGAACATTTCTTG  350

seq1  CTTGTTCTGTGGATACTGAGATCCGAGCTCTGAGCCACGGCTTTCATGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGTGGATACTGAGATCCGAGCTCTGAGCCACGGCTTTCATGGC  400

seq1  AAGCGCTCTCGATCGCCACCTATCTACATCCCCACCTTTGCCAATTCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCTCTCGATCGCCACCTATCTACATCCCCACCTTTGCCAATTCCAC  450

seq1  CCCACCCCAGACTAGCCTAAGACTTGTTATATAGCTGCTGAGGGTGACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCAGACTAGCCTAAGACTTGTTATATAGCTGCTGAGGGTGACCT  500

seq1  GGGACTCCTGGTCTTCTTGCCTCCTGTTTCTGTCTGTAGGCCTGCCTCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCTGGTCTTCTTGCCTCCTGTTTCTGTCTGTAGGCCTGCCTCAC  550

seq1  TATGCCCAGTTTATGCGGTGCTAGCATGCTGGGCGAGCTCTCACCTACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGTTTATGCGGTGCTAGCATGCTGGGCGAGCTCTCACCTACTG  600

seq1  AATCACAGCCCCTTCAGCCCTCCCTGATTTTTTTGCCCTTGCATGATTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGCCCCTTCAGCCCTCCCTGATTTTTTTGCCCTTGCATGATTAC  650

seq1  TCTGTTTTCACCTTCTGCTGTGAGTGATCACCCTTGATAAAAGGAAAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCACCTTCTGCTGTGAGTGATCACCCTTGATAAAAGGAAAGGA  700

seq1  CTCCTCAGAAAGCCACATTAATTTTTTTTTTTTCTGGTTTTTCAAGAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAAAGCCACATTAATTTTTTTTTTTTCTGGTTTTTCAAGAGAG  750

seq1  GGTTTCTCTGTGTATCCCTGGCTGGAATTC  777
      ||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTATCCCTGGCTGGAATTC  780