BAC Information

Click to search

BAC

Clone NameB6Ng01-118I02
Chromosome17 (Build37)
Map Location 77,919,829 - 78,061,731
singlet/doubletdoublet
Overlap genenone
Upstream geneEG624348, LOC545234
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118I02.bB6Ng01-118I02.g
ACCDH922966DH922967
length923690
definitionDH922966|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I02, 5' end.DH922967|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,060,809 - 78,061,731)(77,919,829 - 77,920,521)
sequence
gaattcttcaatcttctgttaaaccgtggttcttcaggggcatctatcta
tacattcctctcaccccacctgaactaacaaagctttccatctgacaact
aggaattcagatgactctttctgtatgagttctgtaaactatttaccatg
cataaccctaaaattattctcattgaagaagctattcttcttcatcttcc
ccccaaaccatgtaggtaaccatttatgtataagtttaaccctcactaca
gtgaaccaaatgttctgtttcattcacagagatagagcaggctgtattgg
cattttttcttcctttgctgacatatgggaacacatataagcagaagtta
aggattgcttctattagacaaccatagttctgtgatgtctctttccagtg
attaataaaataatttcataacttctgtccactctttaaattattttaat
gagaaaaacttcattgtcattgttattacattatagtgaggtgtcatttt
agtttcctttaaaatctatattgagatttttgctgagtaaaaaatttatt
tatggcaaatgtcagatatggtagattttctaaacatgaaaataatgact
ttatcatatgaaaaacattccaaactctataagaagtctaaatgtcaggt
catgaatataaatgagctttgagctatatctgctgttgtgttttattata
agagccaggatatgttctgtagagccaggcatggtgaggttggatgggta
ctttggcaggcctgtgctgaggcatcactttcccttgaggtaccagctat
atgatgggtatagtgtaaaatagaatttatttgacatgggaagtagagtt
gaaaaggacttagaggcataggacagaggggagggcaggagagagagggg
aggcaagcagggaggggagggga
gaattctctctatttctttatcacttgtgataaatgtttatgaataaata
agttatagcataaagttgttttgtattttgatgagaacatataggcaata
aggtaagaggggtgaggagggatattttcaggtttttcctttcatagtaa
gagcattgctcagactactcaaaagcttgatatatatatatatatatata
tatatatatatatatatatatatatatatatatatttatatatatatata
tatcttgtgaaatatattcattgttactaacaggtgacaaaacaagttta
ttttatgtgaaaaacatgcccatggtacctacctataaattctttcattg
tatttctgtttatgacattatgagtttttaaggaaatgaatacatctaga
atattatatactaaaaactaaactcatatatacagatgcttatagtgatt
gataatggtattccaatgcaggaggccatcacctcttttttcgcttgaga
ccttagtaagatagtgaatgaataacaaggaataatatcctatctatgag
aatgatggggaaggaagctagagacttatcgccatctcgcataatgtgtc
atgtagacacatgtatagtattgaaaggtgcactactgggtcactctgag
agaaaattttttcctagagtatttaagaactctccaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78060809_78061731
seq2: B6Ng01-118I02.b_41_963 (reverse)

seq1  TCCCCTCCCCTCCCTGCTTGCCTCCCCTCTCTCTCCTGCCCTCCCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCTCCCTGCTTGCCTCCCCTCTCTCTCCTGCCCTCCCCTCTG  50

seq1  TCCTATGCCTCTAAGTCCTTTTCAACTCTACTTCCCATGTCAAATAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCCTCTAAGTCCTTTTCAACTCTACTTCCCATGTCAAATAAATT  100

seq1  CTATTTTACACTATACCCATCATATAGCTGGTACCTCAAGGGAAAGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTACACTATACCCATCATATAGCTGGTACCTCAAGGGAAAGTGAT  150

seq1  GCCTCAGCACAGGCCTGCCAAAGTACCCATCCAACCTCACCATGCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCACAGGCCTGCCAAAGTACCCATCCAACCTCACCATGCCTGGC  200

seq1  TCTACAGAACATATCCTGGCTCTTATAATAAAACACAACAGCAGATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAACATATCCTGGCTCTTATAATAAAACACAACAGCAGATATAG  250

seq1  CTCAAAGCTCATTTATATTCATGACCTGACATTTAGACTTCTTATAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCTCATTTATATTCATGACCTGACATTTAGACTTCTTATAGAGT  300

seq1  TTGGAATGTTTTTCATATGATAAAGTCATTATTTTCATGTTTAGAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGTTTTTCATATGATAAAGTCATTATTTTCATGTTTAGAAAATC  350

seq1  TACCATATCTGACATTTGCCATAAATAAATTTTTTACTCAGCAAAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATCTGACATTTGCCATAAATAAATTTTTTACTCAGCAAAAATCT  400

seq1  CAATATAGATTTTAAAGGAAACTAAAATGACACCTCACTATAATGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAGATTTTAAAGGAAACTAAAATGACACCTCACTATAATGTAATA  450

seq1  ACAATGACAATGAAGTTTTTCTCATTAAAATAATTTAAAGAGTGGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACAATGAAGTTTTTCTCATTAAAATAATTTAAAGAGTGGACAGA  500

seq1  AGTTATGAAATTATTTTATTAATCACTGGAAAGAGACATCACAGAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAATTATTTTATTAATCACTGGAAAGAGACATCACAGAACTAT  550

seq1  GGTTGTCTAATAGAAGCAATCCTTAACTTCTGCTTATATGTGTTCCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTAATAGAAGCAATCCTTAACTTCTGCTTATATGTGTTCCCATA  600

seq1  TGTCAGCAAAGGAAGAAAAAATGCCAATACAGCCTGCTCTATCTCTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAAAGGAAGAAAAAATGCCAATACAGCCTGCTCTATCTCTGTGA  650

seq1  ATGAAACAGAACATTTGGTTCACTGTAGTGAGGGTTAAACTTATACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGAACATTTGGTTCACTGTAGTGAGGGTTAAACTTATACATAA  700

seq1  ATGGTTACCTACATGGTTTGGGGGGAAGATGAAGAAGAATAGCTTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACCTACATGGTTTGGGGGGAAGATGAAGAAGAATAGCTTCTTCA  750

seq1  ATGAGAATAATTTTAGGGTTATGCATGGTAAATAGTTTACAGAACTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATAATTTTAGGGTTATGCATGGTAAATAGTTTACAGAACTCATA  800

seq1  CAGAAAGAGTCATCTGAATTCCTAGTTGTCAGATGGAAAGCTTTGTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGTCATCTGAATTCCTAGTTGTCAGATGGAAAGCTTTGTTAGT  850

seq1  TCAGGTGGGGTGAGAGGAATGTATAGATAGATGCCCCTGAAGAACCACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGGGTGAGAGGAATGTATAGATAGATGCCCCTGAAGAACCACGG  900

seq1  TTTAACAGAAGATTGAAGAATTC  923
      |||||||||||||||||||||||
seq2  TTTAACAGAAGATTGAAGAATTC  923

seq1: chr17_77919829_77920521
seq2: B6Ng01-118I02.g_69_758

seq1  GAATTCTCTCTATTTCTTTATCACTTGTGATAAATGTTTATGAATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTATTTCTTTATCACTTGTGATAAATGTTTATGAATAAATA  50

seq1  AGTTATAGCATAAAGTTGTTTTGTATTTTGATGAGAACATATAGGCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGCATAAAGTTGTTTTGTATTTTGATGAGAACATATAGGCAATA  100

seq1  AGGTAAGAGGGGTGAGGAGGGATATTTTCAGGTTTTTCCTTTCATAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAGGGGTGAGGAGGGATATTTTCAGGTTTTTCCTTTCATAGTAA  150

seq1  GAGCATTGCTCAGACTACTCAAAAGCTTGATATATATATATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGCTCAGACTACTCAAAAGCTTGATATATATATATATATATATA  200

seq1  TATATATATATATATATATATATATATATATATAATTTAATTTTCACAGT  250
      |||||||||||||||||||||||||||||||||| ||  || |  | |  
seq2  TATATATATATATATATATATATATATATATATATTTATATATATATATA  250

seq1  AATCTTGTGAAATAAATTCAATGTCACTAACAGGTGACAAAACAAGTTTA  300
       ||||||||||||| ||||| ||| |||||||||||||||||||||||||
seq2  TATCTTGTGAAATATATTCATTGTTACTAACAGGTGACAAAACAAGTTTA  300

seq1  TTTTATGTGAAAAACATGCCCATGGTACCTACCTATAAATTCTTTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGAAAAACATGCCCATGGTACCTACCTATAAATTCTTTCATTG  350

seq1  TATTTCTGTTTATGACATTATGAGTTTTAAAGGAAATGAATACATCTAGC  400
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TATTTCTGTTTATGACATTATGAGTTTTTAAGGAAATGAATACATCTAGA  400

seq1  ATATTATATCCTATATACTTAACTCATAAGTCCAGATGCTTTTAGTGATT  450
      ||||||||| ||| | ||| ||||||||  | ||||||||| ||||||||
seq2  ATATTATATACTAAAAACTAAACTCATATATACAGATGCTTATAGTGATT  450

seq1  GATAATGGTATTCCAATTCAAGATGCCATCACCTCTTTTTTCTCTTGAGA  500
      ||||||||||||||||| || || |||||||||||||||||| |||||||
seq2  GATAATGGTATTCCAATGCAGGAGGCCATCACCTCTTTTTTCGCTTGAGA  500

seq1  CCTTAGTAAGATAGTGAATGAATAACAAGGAATAATATCCTAACAATGAG  550
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  CCTTAGTAAGATAGTGAATGAATAACAAGGAATAATATCCTATCTATGAG  550

seq1  AATGATGGGGAAGGAAGCAAGAGACTTATCGCCATCTCGCAGAATGTATC  600
      |||||||||||||||||| |||||||||||||||||||||| ||||| ||
seq2  AATGATGGGGAAGGAAGCTAGAGACTTATCGCCATCTCGCATAATGTGTC  600

seq1  ATGTAGACACATGTATAGTAATTGAAAAGGTGCACTACTGGGTCACTCAG  650
      ||||||||||||||||||| |||| ||||||||||||||||||||||| |
seq2  ATGTAGACACATGTATAGT-ATTG-AAAGGTGCACTACTGGGTCACTCTG  648

seq1  AGAGAAAACAGCAGCCTAGAGTATATAGAGAACTCTCCAAGCT  693
      ||||||||      |||||||||| || |||||||||||||||
seq2  AGAGAAAATTTTTTCCTAGAGTATTTA-AGAACTCTCCAAGCT  690