BAC Information

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BAC

Clone NameB6Ng01-119B02
Chromosome17 (Build37)
Map Location 32,598,322 - 32,599,448
singlet/doubletsinglet
Overlap gene4732474A20Rik
Upstream genePde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2
Downstream geneEG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B02.bB6Ng01-119B02.g
ACCDH923377DH923378
length1,2181,111
definitionDH923377|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B02, 5' end.DH923378|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcagacaaccggattcttcttcgacaaagctttattgcttca
tctgaaggaagaccccaaacaaggaaaatggtgctgcttatatacccctc
tgtgtgatgtgtcagctcctgactagctgctcactcatcaccccactact
acaccctaggatgggcagtgacttggcacaaatttactcttgcatctgcg
cacattacttgtttaccagttaggcacagcggaggctcatgatggcgatt
gctcacggctctctacagtggaccaagctacattcctaatggctgagagt
acttgccaagtcaccatggtagggttgtgggagctgccaaggctcaatgc
cagaagatacaccatagccatttcatggtttctctggccttgcagaaggg
ggtttcttggctgtctggctgctatccagttggcatcaggtgcaggtgct
tgtctgatatgagttacatgaacccaggcagttattccatccatgttgac
agagtttggtgtggtcaacaacaccaagaatgcccccctccactttgctt
cccagttttcagcagaatgcctctctctctctctctttttaattttttca
aagtctacttctaataatgattcttaaatgccttaacctcccttttagcc
caccacctaccagaggtagtgggaaagaaaggatactggggatatgaact
tgtttagaaaggttctttgaagtaattcctgtcagtgttgtctggaaatt
gacatttcagttcacaggttagtagtggcagctctattcactcacaaaca
cttaacggacacagcagcaatccatttcatcagtcaagatagcaaacatg
aagcagcagtggtagtactatatagcaaagacagccaggcgctgtcctta
ccacaagtcagcaggagggacccagagagatgtcaggagaagctctctag
ggaattgagatcagtgaagactcagactcacaagcattgtacagctagct
ctataagcagctaactcagctcgtcactgtctggtgagtctatttataca
tcaaacatcatgggtcttgtccagtactgtctgctcagcatgtgtgtttg
tcccagctgacatccctggcatcagccagttctgtaagcgataagaactg
cagacaaccacggagttttttgtgcaatttctctctatggaattccacac
aaaaagacgaagctctaa
gaattcctaacaggctgcagagccaggctgaagatacggcgtgtgttaga
gcataggcctgacaagcatttagatgcgttagctggcgagcatgcagatc
cgaattcggttctcagcacccacatgaaacactgggcacgaaaatatgag
tcttcccctctggagaagcagggagaggaggctccgtgagacttgctggc
cagctagttaatcaaaccagtgagctgtaggttcaatgagagacagtagt
ggttatgggagcaagacagagagcagttgagaatgaagcctgccatgcat
tacaccagcacccatgaaaactgaaagcaagcaaacaagcaagtcagaaa
gaaacaaacaaatgaataagtaagaaatgaatctgggaagatggctcagt
gggtaaaggcacctgccacggagtctgatgacctgagttcaatacctgga
ctctcaaggaaaaaaaaaacagttcctgaaggttgttttctgcctccaca
cacagagtggagataaatatctgaataaatagatgtaatttaaaagtaaa
caaagacagaaaaaagggagagggtggaggaaagaaagaagggaggaagg
cccccaacacagattctggggttagaaagtaccacattggagagatggat
caacaggtgcagctacttgccaagagattaatagccaagagtttgatccc
ttgaccaaatatggtgcaaggagacaaccaattcctgcaaaatttcctct
gacctcagcatgataccatgacccacaaataaataaattcatgtaaattt
tactaaaagaatgttcctaaatgctactcccctctgctccctcattagat
accttgtacctggtctcctccctcatgagccagggccacgtctgtcatgt
tcaccacgttagttccaacgcctagaactgagtcacacacatcactgggc
ctctgagtatctgccacccagtgttttgaaaaaaaaaaaaaaccacccac
cacaaaacaaacatagagccacttagtgagggtttgtgtaggcggagcac
ttggaaaggatctcatgatgggactgctcctgccttgcagagaacttcat
cagctctgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32598322_32599448
seq2: B6Ng01-119B02.g_67_1177

seq1  GAATTCCTAACAGGCTGCAGAGCCAGGCTGAAGATACGGCGTGTGTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACAGGCTGCAGAGCCAGGCTGAAGATACGGCGTGTGTTAGA  50

seq1  GCATAGGCCTGACAAGCATTTAGATGCGTTAGCTGGCGAGCATGCAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGCCTGACAAGCATTTAGATGCGTTAGCTGGCGAGCATGCAGATC  100

seq1  CGAATTCGGTTCTCAGCACCCACATGAAACACTGGGCACGAAAATATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCGGTTCTCAGCACCCACATGAAACACTGGGCACGAAAATATGAG  150

seq1  TCTTCCCCTCTGGAGAAGCAGGGAGAGGAGGCTCCGTGAGACTTGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTCTGGAGAAGCAGGGAGAGGAGGCTCCGTGAGACTTGCTGGC  200

seq1  CAGCTAGTTAATCAAACCAGTGAGCTGTAGGTTCAATGAGAGACAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGTTAATCAAACCAGTGAGCTGTAGGTTCAATGAGAGACAGTAGT  250

seq1  GGTTATGGGAGCAAGACAGAGAGCAGTTGAGAATGAAGCCTGCCATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGGAGCAAGACAGAGAGCAGTTGAGAATGAAGCCTGCCATGCAT  300

seq1  TACACCAGCACCCATGAAAACTGAAAGCAAGCAAACAAGCAAGTCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGCACCCATGAAAACTGAAAGCAAGCAAACAAGCAAGTCAGAAA  350

seq1  GAAACAAACAAATGAATAAGTAAGAAATGAATCTGGGAAGATGGCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAAATGAATAAGTAAGAAATGAATCTGGGAAGATGGCTCAGT  400

seq1  GGGTAAAGGCACCTGCCACGGAGTCTGATGACCTGAGTTCAATACCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGGCACCTGCCACGGAGTCTGATGACCTGAGTTCAATACCTGGA  450

seq1  CTCTCAAGGAAAAAAAAAACAGTTCCTGAAGGTTGTTTTCTGCCTCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGGAAAAAAAAAACAGTTCCTGAAGGTTGTTTTCTGCCTCCACA  500

seq1  CACAGAGTGGAGATAAATATCTGAATAAATAGATGTAATTTAAAAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTGGAGATAAATATCTGAATAAATAGATGTAATTTAAAAGTAAA  550

seq1  CAAAGACAGAAAAAAGGGAGAGGGTGGAGGAAAGAAAGAAGGGAGGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGAAAAAAGGGAGAGGGTGGAGGAAAGAAAGAAGGGAGGAAGG  600

seq1  CCCCCAACACAGATTCTGGGGTTAGAAAGTACCACATTGGAGAGATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACACAGATTCTGGGGTTAGAAAGTACCACATTGGAGAGATGGAT  650

seq1  CAACAGGTGCAGCTACTTGCCAAGAGATTAATAGCCAAGAGTTTGATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTGCAGCTACTTGCCAAGAGATTAATAGCCAAGAGTTTGATCCC  700

seq1  TTGACCAAATATGGTGCAAGGAGACAACCAATTCCTGCAAAATTTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAATATGGTGCAAGGAGACAACCAATTCCTGCAAAATTTCCTCT  750

seq1  GACCTCAGCATGATACCATGACCCACAAATAAATAAATTCATGTAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGCATGATACCATGACCCACAAATAAATAAATTCATGTAAATTT  800

seq1  TACTAAAAGAATGTTCCTAAATGCTACTCCCCTCTGCTCCCTCATTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAAGAATGTTCCTAAATGCTACTCCCCTCTGCTCCCTCATTAGAT  850

seq1  ACCTTGTACCTGGTCTCCTCCCTCATGAGCCAGGGCCACGTCTGTCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTACCTGGTCTCCTCCCTCATGAGCCAGGGCCACGTCTGTCATGT  900

seq1  TCACCACGTTAGTTCCAACGCCTAGAACTGAGTCACACACATCACTGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACGTTAGTTCCAACGCCTAGAACTGAGTCACACACATCACTGGGC  950

seq1  CTCTGAAGGTATCTGCCACCCAGTGTTTTGAAAAAAAAAAAAAAACCACC  1000
      ||||||  |||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTGA--GTATCTGCCACCCAGTGTTTTG-AAAAAAAAAAAAAACCACC  997

seq1  ACCAACAAAACAAAACATAAGGAG-CACTTAGTGAGGGTGTG-GTAGGCG  1048
        | ||||||| |||||||  ||| |||||||||||||| || |||||||
seq2  CACCACAAAAC-AAACATA--GAGCCACTTAGTGAGGGTTTGTGTAGGCG  1044

seq1  GAGGCACTTTGGAAAGGATCTCAATGGATGGGACTGGCTTCCCTGGCCTT  1098
      || |||| |||||||||||||||   ||||||||| |||  ||| |||||
seq2  GA-GCAC-TTGGAAAGGATCTCA--TGATGGGACT-GCT--CCT-GCCTT  1086

seq1  GCCAGAAGACTTTCCATCAGCTACTGTTA  1127
      | ||||  ||||  |||||||| ||||||
seq2  G-CAGAGAACTT--CATCAGCT-CTGTTA  1111