BAC Information

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BAC

Clone NameB6Ng01-119B21
Chromosome17 (Build37)
Map Location 25,323,408 - 25,358,494
singlet/doubletdoublet
Overlap geneBC003965
Upstream geneTbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317
Downstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B21.bB6Ng01-119B21.g
ACCDH923415DH923416
length9981,060
definitionDH923415|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B21, 5' end.DH923416|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,323,408 - 25,324,396)(25,357,440 - 25,358,494)
sequence
gaattctctgggtgagtgcccagcaaatatcaggtagggagagggcctgt
aactaactataagccagctgcatgtacaagacagtagataaactgttggg
cagaaagaaatgattgaataaaacatgttcttttgagggaggaggagtta
acgtaactgacgcttacaaaattagatttactttatgtgtatgtatgtgc
atcacatacatgtctgttgcctatacaggtaagaagaggatgtcagattc
cctggaactggaaatacaaatggctatgagcaaccatgtaggttctggga
actgaacttgggtcctctggaagaggagccattcactgtgagcaatttct
ccagccccaacagccactttgtgtaagctcttgaaaatggaaaggctcag
tagtgttggaagtgagctgttacacagataaaaacctgttagttctgttc
tgagccatagccctcgagtaccagcttcaataaaaggacacgtctggccc
ttatgtgggtgtcacaggtgatgtctgcagaggaataaaacacatctttt
gatgagagacctttgcccatgtccacagtcaaggtcgctgagttccacca
tcactgctatttgctctctgtcacaccttacagagccagcttctctctct
ctctctctctctctctccctctctctctctttctctccctctctctctct
cagattccttaggttgtcttgtgtgtttcttccaggctggacttgggggg
tttgacctagttttcattcccctatccctcagcagtctgagacacattta
atccctctgtaggttcccctgtctgccttccctgccttgctcattcttct
atttgatctttgaaaaaacaatgtttctgtttgctgggaactgcctacaa
ctcactatccatccacaggcttgtgcaacctttaaaaataagtcctttta
aactaagctaaccttcagggccggggggtaaggggaaatgctctggga
gaattccatatgaaatgatggctaggagaattctgtagtcaaggcagctg
tcagtctgaacccctgagacactttcagtggccgtggtgccctggtgccg
ctccggctggggtctaacttcccctcaccactcttccgctgcatgtcctc
cttcccattgctactgtcacgctagaaaaccagaggcaaaaggcagctgg
caggtcctgaggccagcggcattcttttggcatcaaggagcctgagggag
tgggcaaacgcctgagggtaactgcaggacagtctctagattctaatgtc
catctgcaataatcctgtggacacagcacctaggacctacacaacttccc
tcccttctctccctgaacccgacagcagaaacagggaggtggtggttccc
actgcctacatggccacctgctgcaagataagcctgaattctagagggtt
cttcagaaggtgagacagacccacacagaacccctgtggaactcaggtct
tccagtggaggaggccacactagccacagactatgcagtgatttagacaa
gtgacctgtggtagaatgggagagcagagtctatcctgagtgaaatcaag
gctggaaaggtactaagggcacatactgcaacaacaaactcctcctcagg
ctgcagtggtgccaagcccacagtgctttcccagaagcctcagcagcaca
tcaccaactcccaagattccctagtagtcctcatgtaatacacggctgtc
tttaatgtcccttgaggatggtgaagggaactctttgccagcactggggc
atcattcccagtctacatcccatgtaggactctagctgccctacatggat
agagctgtcttgttgggatgctgagtacaacatctgtatgtcctctaggt
agggcttgccacttttgctacttgtattgtcatatggacacctgttattt
tgggtcctaggcaacaataaccgtcccaaagctacagggcttatcttcct
agtttcacattctctaaaaccacaaatgcatttattcttctgtggtggtg
acttctacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25323408_25324396
seq2: B6Ng01-119B21.b_47_1044

seq1  GAATTCTCTGGGTGAGTGCCCAGCAAATATCAGGTAGGGAGAGGGCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGTGAGTGCCCAGCAAATATCAGGTAGGGAGAGGGCCTGT  50

seq1  AACTAACTATAAGCCAGCTGCATGTACAAGACAGTAGATAAACTGTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTATAAGCCAGCTGCATGTACAAGACAGTAGATAAACTGTTGGG  100

seq1  CAGAAAGAAATGATTGAATAAAACATGTTCTTTTGAGGGAGGAGGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAATGATTGAATAAAACATGTTCTTTTGAGGGAGGAGGAGTTA  150

seq1  ACGTAACTGACGCTTACAAAATTAGATTTACTTTATGTGTATGTATGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACTGACGCTTACAAAATTAGATTTACTTTATGTGTATGTATGTGC  200

seq1  ATCACATACATGTCTGTTGCCTATACAGGTAAGAAGAGGATGTCAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATACATGTCTGTTGCCTATACAGGTAAGAAGAGGATGTCAGATTC  250

seq1  CCTGGAACTGGAAATACAAATGGCTATGAGCAACCATGTAGGTTCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTGGAAATACAAATGGCTATGAGCAACCATGTAGGTTCTGGGA  300

seq1  ACTGAACTTGGGTCCTCTGGAAGAGGAGCCATTCACTGTGAGCAATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTTGGGTCCTCTGGAAGAGGAGCCATTCACTGTGAGCAATTTCT  350

seq1  CCAGCCCCAACAGCCACTTTGTGTAAGCTCTTGAAAATGGAAAGGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAACAGCCACTTTGTGTAAGCTCTTGAAAATGGAAAGGCTCAG  400

seq1  TAGTGTTGGAAGTGAGCTGTTACACAGATAAAAACCTGTTAGTTCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGGAAGTGAGCTGTTACACAGATAAAAACCTGTTAGTTCTGTTC  450

seq1  TGAGCCATAGCCCTCGAGTACCAGCTTCAATAAAAGGACACGTCTGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATAGCCCTCGAGTACCAGCTTCAATAAAAGGACACGTCTGGCCC  500

seq1  TTATGTGGGTGTCACAGGTGATGTCTGCAGAGGAATAAAACACATCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGGTGTCACAGGTGATGTCTGCAGAGGAATAAAACACATCTTTT  550

seq1  GATGAGAGACCTTTGCCCATGTCCACAGTCAAGGTCGCTGAGTTCCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGACCTTTGCCCATGTCCACAGTCAAGGTCGCTGAGTTCCACCA  600

seq1  TCACTGCTATTTGCTCTCTGTCACACCTTACAGAGCCAGCTTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTATTTGCTCTCTGTCACACCTTACAGAGCCAGCTTCTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCCCTCTCTCTCTCTTTCTCTCCCTCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCCCTCTCTCTCTCTTTCTCTCCCTCTCTCTCTCT  700

seq1  CAGATTCCTTAGGTTGTCTTGTGTGTTTC-TCCAGGCTGGACTTGGGGG-  748
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CAGATTCCTTAGGTTGTCTTGTGTGTTTCTTCCAGGCTGGACTTGGGGGG  750

seq1  -TTGACCTAGTTTTCATT-CCCTATCCCTCAGCAGTCTGAGACACATTT-  795
       ||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TTTGACCTAGTTTTCATTCCCCTATCCCTCAGCAGTCTGAGACACATTTA  800

seq1  ATTCCTCTGTAGGTTCCCCTGTCTGCCCTTCCCTG-CTTGCTCATTCTTC  844
      || |||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  ATCCCTCTGTAGGTTCCCCTGTCTG-CCTTCCCTGCCTTGCTCATTCTTC  849

seq1  TATTTGATCTTTGAAAAAACAATGTTTCTGTTTGCTGGG-ACTGCCTACA  893
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTTGATCTTTGAAAAAACAATGTTTCTGTTTGCTGGGAACTGCCTACA  899

seq1  GCTCACTATCCATCCACATGCTTGTGCAACCATT-AAAATAAGTCC-TTT  941
       ||||||||||||||||| |||||||||||| || ||||||||||| |||
seq2  ACTCACTATCCATCCACAGGCTTGTGCAACCTTTAAAAATAAGTCCTTTT  949

seq1  AAACTAAGTTAA-CTTCAGGGTCTGTGGGCTAGGGGAAATGCTCAGGGA  989
      |||||||| ||| |||||||| | | |||  ||||||||||||| ||||
seq2  AAACTAAGCTAACCTTCAGGGCCGGGGGGTAAGGGGAAATGCTCTGGGA  998

seq1: chr17_25357440_25358494
seq2: B6Ng01-119B21.g_67_1126 (reverse)

seq1  TGGTAGAAGGTCAC--ACACAGAAGAATAAATGGCATTTGTGGTTTTAGA  48
      |||||||| |||||   ||||||||||||||| |||||||||||||||||
seq2  TGGTAGAA-GTCACCACCACAGAAGAATAAAT-GCATTTGTGGTTTTAGA  48

seq1  G-ATGTGGAACTAGGAAGATAAGCCCTGTAGCTTTGGGACGGTTA-TGTT  96
      | ||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATGTGAAACTAGGAAGATAAGCCCTGTAGCTTTGGGACGGTTATTGTT  98

seq1  GCCTAGGGACCCAGAAT-ACAGGTGTCCATATTGAC-ATACAAGTAGC-A  143
      ||||| ||||||| ||| ||||||||||||| |||| ||||||||||| |
seq2  GCCTA-GGACCCAAAATAACAGGTGTCCATA-TGACAATACAAGTAGCAA  146

seq1  AAGTGGCAAGCCCTACCTAGAGGACATACAGATG-TGTACTCAGCATCCC  192
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTGGCAAGCCCTACCTAGAGGACATACAGATGTTGTACTCAGCATCCC  196

seq1  -ACAAGACAGCTCTATCCATGTAGGGCAGCTAGAGTCCTACATTGGATGT  241
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAAGACAGCTCTATCCATGTAGGGCAGCTAGAGTCCTACATGGGATGT  246

seq1  AGACTGGGAATGATGCCCCAGTGCTGGCAAAGAGTTCCCTTCACCATCCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGAATGATGCCCCAGTGCTGGCAAAGAGTTCCCTTCACCATCCT  296

seq1  CAAGGGACATTAAAGACAGCCGTGTATTACATGAGGACTACTAGGGAATC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACATTAAAGACAGCCGTGTATTACATGAGGACTACTAGGGAATC  346

seq1  TTGGGAGTTGGTGATGTGCTGCTGAGGCTTCTGGGAAAGCACTGTGGGCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTTGGTGATGTGCTGCTGAGGCTTCTGGGAAAGCACTGTGGGCT  396

seq1  TGGCACCACTGCAGCCTGAGGAGGAGTTTGTTGTTGCAGTATGTGCCCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCACTGCAGCCTGAGGAGGAGTTTGTTGTTGCAGTATGTGCCCTT  446

seq1  AGTACCTTTCCAGCCTTGATTTCACTCAGGATAGACTCTGCTCTCCCATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTTTCCAGCCTTGATTTCACTCAGGATAGACTCTGCTCTCCCATT  496

seq1  CTACCACAGGTCACTTGTCTAAATCACTGCATAGTCTGTGGCTAGTGTGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACAGGTCACTTGTCTAAATCACTGCATAGTCTGTGGCTAGTGTGG  546

seq1  CCTCCTCCACTGGAAGACCTGAGTTCCACAGGGGTTCTGTGTGGGTCTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCACTGGAAGACCTGAGTTCCACAGGGGTTCTGTGTGGGTCTGT  596

seq1  CTCACCTTCTGAAGAACCCTCTAGAATTCAGGCTTATCTTGCAGCAGGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCTGAAGAACCCTCTAGAATTCAGGCTTATCTTGCAGCAGGTG  646

seq1  GCCATGTAGGCAGTGGGAACCACCACCTCCCTGTTTCTGCTGTCGGGTTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAGGCAGTGGGAACCACCACCTCCCTGTTTCTGCTGTCGGGTTC  696

seq1  AGGGAGAGAAGGGAGGGAAGTTGTGTAGGTCCTAGGTGCTGTGTCCACAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAAGGGAGGGAAGTTGTGTAGGTCCTAGGTGCTGTGTCCACAG  746

seq1  GATTATTGCAGATGGACATTAGAATCTAGAGACTGTCCTGCAGTTACCCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGCAGATGGACATTAGAATCTAGAGACTGTCCTGCAGTTACCCT  796

seq1  CAGGCGTTTGCCCACTCCCTCAGGCTCCTTGATGCCAAAAGAATGCCGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGTTTGCCCACTCCCTCAGGCTCCTTGATGCCAAAAGAATGCCGCT  846

seq1  GGCCTCAGGACCTGCCAGCTGCCTTTTGCCTCTGGTTTTCTAGCGTGACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGACCTGCCAGCTGCCTTTTGCCTCTGGTTTTCTAGCGTGACA  896

seq1  GTAGCAATGGGAAGGAGGACATGCAGCGGAAGAGTGGTGAGGGGAAGTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATGGGAAGGAGGACATGCAGCGGAAGAGTGGTGAGGGGAAGTTA  946

seq1  GACCCCAGCCGGAGCGGCACCAGGGCACCACGGCCACTGAAAGTGTCTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCCGGAGCGGCACCAGGGCACCACGGCCACTGAAAGTGTCTCA  996

seq1  GGGGTTCAGACTGACAGCTGCCTTGACTACAGAATTCTCCTAGCCATCAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCAGACTGACAGCTGCCTTGACTACAGAATTCTCCTAGCCATCAT  1046

seq1  TTCATATGGAATTC  1055
      ||||||||||||||
seq2  TTCATATGGAATTC  1060