BAC Information

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BAC

Clone NameB6Ng01-119O03
Chromosome17 (Build37)
Map Location 41,340,926 - 41,538,487
singlet/doubletdoublet
Overlap geneLOC627577
Upstream genePgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
Downstream geneLOC627626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119O03.bB6Ng01-119O03.g
ACCDH923976DH923977
length1,1561,083
definitionDH923976|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O03, 5' end.DH923977|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,340,926 - 41,342,079)(41,537,387 - 41,538,487)
sequence
gaattcaaattttagtatattggtatcatactattaggacactattaggt
accttattgtcttgtctaatcctttttgctgtttaacaaagtaacaaata
tataggaagtacaccaaccatcttgtcaaggtcattgtcttactttccta
tggccaaatgaaacaccatgtctaagaaacttttacaaaagcacttaatt
gggaaattccttccagttcagagggtaagtccatgaccatcatggtgaaa
agcatggtagcaggcagacaggcaaggccttgcagcagtatcttagagct
tacattttgagaaaaccatgaggcggagacaaagagaactaactggagat
ggcttgagcatctgaaaccttgaagcccattcccaatgacacatttcctc
caacaagaccacccaaactccaagaaagtcacagctcttaatccttccta
cacagtttcacaaacgagggaaaaagcattcaaatatatgagactatgga
ggccaatctgatttgaaccaccacacagactttgaaacagcaagagtaaa
ctaaagatttccactttgtgtttcacaaagtctgttatctctatttgtgg
gtaaaatggcatacaggtgataggatcccctgacagttcatccaccagca
tatctgccatttggcttgagaatgattcaaagttaaatcatgttgatcat
agtactgacatatgatcttcctctgtggattaacaccctcaccttctata
gtctagtagagtttggggaaaagggccgaaactagtagagatttttctag
tctgtgaggcctattccagaagtcatgtttctgtggaagctccataatgt
gaaatggtcttacagtgtgaagatcaggttactggcatgaattctttccc
cttacacagattcatctccgtaaccagtagagagagctcaggcttctgca
cagatgccctcctgggatgttctgatgttgactattaaagaagatcatac
attttcaaatcaataattgtatcttttcattacgcttatttcgagaacta
tctcagccacaattcaagactgatcttgatcgtcatttttctttttatat
tatattaatatatcttagcaacccagaattattcagtggtccaggttgaa
gaaaat
gaattcttttttccatgggaatattacagatgagaaatttcaataagatt
tttaacctgtttatttactttagttctgcccaaagctttttatataatag
cttattaatgggcattttctcttttccatatctgccctgttcttaataac
tgcatttgccccatgcctaatttctatactgctagcaaatattgtgaaaa
ctacaacaaaatgatagaaaaattaccagctattataaatttttcatatg
attatgatgaataaggaagattgaaacagcattctgatttttctctttag
taacatagataaatagatatatagatagacagatagacagatagatgcat
atatatgtacataaacatacacacacatacaaacacacacatatatgact
gggtagttgttttagtagctttctttgggcttgggatacacagagagttc
caggccaccacaaactacaggggaactctcaaatgcaaaataataaaaag
cagctataaagtaaaatattttggtgtaaaggtttcaatctcagctcaag
ttaagcaatgaaaggctatatttgtattagtgtatttcagaaaattaata
atttcagatgagacaatttttatggaacaaaaacaactccatactgaaca
aaatggttaaggtttaactttattcatgaggtggttgggaaaatgtaaag
gaaaaaaatatgtttgaaatatgcaatgggttgataagactactaagtac
ttaccttacagaaaactcttgacttttgttcttgtttattaaagaaaaaa
acatgctggatcctttggatccattttttctctattaatagagcacagta
aaatcaattattcaaagaaaccatcagtaagactatttggctgtcttttg
ggattgtggtttaggtatgtaattagtctagcttatctgtctgtctttat
gaaacattcttgtatatcatagctaatctcagctttcagtgagactgtac
tcattatagcaaatcagtttattcactattcagagaggagttatgtggtg
agaaatatctatagaaaatatgccttgtcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41340926_41342079
seq2: B6Ng01-119O03.b_50_1205

seq1  GAATTCAAATTTTAGTATATTGGTATCATACTATTAGGACACTATTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTTAGTATATTGGTATCATACTATTAGGACACTATTAGGT  50

seq1  ACCTTATTGTCTTGTCTAATCCTTTTTGCTGTTTAACAAAGTAACAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTGTCTTGTCTAATCCTTTTTGCTGTTTAACAAAGTAACAAATA  100

seq1  TATAGGAAGTACACCAACCATCTTGTCAAGGTCATTGTCTTACTTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAAGTACACCAACCATCTTGTCAAGGTCATTGTCTTACTTTCCTA  150

seq1  TGGCCAAATGAAACACCATGTCTAAGAAACTTTTACAAAAGCACTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAATGAAACACCATGTCTAAGAAACTTTTACAAAAGCACTTAATT  200

seq1  GGGAAATTCCTTCCAGTTCAGAGGGTAAGTCCATGACCATCATGGTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTCCTTCCAGTTCAGAGGGTAAGTCCATGACCATCATGGTGAAA  250

seq1  AGCATGGTAGCAGGCAGACAGGCAAGGCCTTGCAGCAGTATCTTAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTAGCAGGCAGACAGGCAAGGCCTTGCAGCAGTATCTTAGAGCT  300

seq1  TACATTTTGAGAAAACCATGAGGCGGAGACAAAGAGAACTAACTGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGAGAAAACCATGAGGCGGAGACAAAGAGAACTAACTGGAGAT  350

seq1  GGCTTGAGCATCTGAAACCTTGAAGCCCATTCCCAATGACACATTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGCATCTGAAACCTTGAAGCCCATTCCCAATGACACATTTCCTC  400

seq1  CAACAAGACCACCCAAACTCCAAGAAAGTCACAGCTCTTAATCCTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGACCACCCAAACTCCAAGAAAGTCACAGCTCTTAATCCTTCCTA  450

seq1  CACAGTTTCACAAACGAGGGAAAAAGCATTCAAATATATGAGACTATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTCACAAACGAGGGAAAAAGCATTCAAATATATGAGACTATGGA  500

seq1  GGCCAATCTGATTTGAACCACCACACAGACTTTGAAACAGCAAGAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATCTGATTTGAACCACCACACAGACTTTGAAACAGCAAGAGTAAA  550

seq1  CTAAAGATTTCCACTTTGTGTTTCACAAAGTCTGTTATCTCTATTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATTTCCACTTTGTGTTTCACAAAGTCTGTTATCTCTATTTGTGG  600

seq1  GTAAAATGGCATACAGGTGATAGGATCCCCTGACAGTTCATCCACCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGCATACAGGTGATAGGATCCCCTGACAGTTCATCCACCAGCA  650

seq1  TATCTGCCATTTGGCTTGAGAATGATTCAAAGTTAAATCATGTTGATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCATTTGGCTTGAGAATGATTCAAAGTTAAATCATGTTGATCAT  700

seq1  AGTACTGACATATGATCTTCCTCTGTGGATTAACACCCTCACCTTCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGACATATGATCTTCCTCTGTGGATTAACACCCTCACCTTCTATA  750

seq1  GTCTAGTAGAGTTTGGGGAAAAGGGCCGAAACTAGTAGAGATTTTTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTAGAGTTTGGGGAAAAGGGCCGAAACTAGTAGAGATTTTTCTAG  800

seq1  TCTGTGAGGCCTATTCCAGAAGTCATGTTTCTGTGGAAGCTCCATAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGGCCTATTCCAGAAGTCATGTTTCTGTGGAAGCTCCATAATGT  850

seq1  GAAATGGTCTTACAGTGTGAAGATCAGGTTACTGGCATGAATTCTTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTCTTACAGTGTGAAGATCAGGTTACTGGCATGAATTCTTTCCC  900

seq1  CTTACACAGATTCATCTCCGTAACCAGTAGAGAGAGCTCAGGCTTCTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGATTCATCTCCGTAACCAGTAGAGAGAGCTCAGGCTTCTGCA  950

seq1  CAGATGCCCTCCTGGGATGTTCTGATGTTGACTATTAAAGAAGATCATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCCTCCTGGGATGTTCTGATGTTGACTATTAAAGAAGATCATAC  1000

seq1  ATTTCCAGAATCAATAATTGTATCTTTTCATTACGGCTTATTTCGAGAAC  1050
      |||| || |||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTCA-AATCAATAATTGTATCTTTTCATTAC-GCTTATTTCGAGAAC  1048

seq1  TATCTCAG-CACAATTCAGGGACTGATTCTTGATCGTCATTTTTCTTTTT  1099
      |||||||| |||||||||  |||||| |||||||||||||||||||||||
seq2  TATCTCAGCCACAATTCA-AGACTGA-TCTTGATCGTCATTTTTCTTTTT  1096

seq1  ATTATATA-----ATATCTTAGCAACCAAGATTTATTCAGTGGT-CAGGT  1143
      ||  ||||     |||||||||||||| ||| |||||||||||| |||||
seq2  ATATTATATTAATATATCTTAGCAACCCAGAATTATTCAGTGGTCCAGGT  1146

seq1  TGAAAGAAAAT  1154
      || ||||||||
seq2  TG-AAGAAAAT  1156

seq1: chr17_41537387_41538487
seq2: B6Ng01-119O03.g_67_1149 (reverse)

seq1  AAATGACAAGGGGCATATTTTCTATTAAGATATTTTCTCACCAACATAAC  50
      |||||||||  ||||||||||||||  ||||| ||||||||| |||||||
seq2  AAATGACAA--GGCATATTTTCTAT--AGATA-TTTCTCACC-ACATAAC  44

seq1  TCCTCTCTTAAAATAGTGAAATAAAACCTGATTTGCTTATAAATTGAGTA  100
      ||||||||   ||||||| ||||||  ||||||||| |||||  ||||||
seq2  TCCTCTCT--GAATAGTG-AATAAA--CTGATTTGC-TATAA--TGAGTA  86

seq1  CAGTCTTCACTGAAAAGCTGAGATTAGCTATGATATACAAGAATGTTTCA  150
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTC-TCACTG-AAAGCTGAGATTAGCTATGATATACAAGAATGTTTCA  134

seq1  TAAAGACAGACAGATAAGCTAGAACTTAATTACATACCTAAACCACAATC  200
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TAAAGACAGACAGATAAGCTAGA--CTAATTACATACCTAAACCACAATC  182

seq1  CCAAAAGACAGCCAAATAGTCTTACTGATGGTTTCTTTGAATAATTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGACAGCCAAATAGTCTTACTGATGGTTTCTTTGAATAATTGATT  232

seq1  TTACTGTGCTCTATTAATAGAGAAAAAATGGATCCAAAGGATCCAGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGCTCTATTAATAGAGAAAAAATGGATCCAAAGGATCCAGCATG  282

seq1  TTTTTTTCTTTAATAAACAAGAACAAAAGTCAAGAGTTTTCTGTAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTAATAAACAAGAACAAAAGTCAAGAGTTTTCTGTAAGGTA  332

seq1  AGTACTTAGTAGTCTTATCAACCCATTGCATATTTCAAACATATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTAGTAGTCTTATCAACCCATTGCATATTTCAAACATATTTTTTT  382

seq1  CCTTTACATTTTCCCAACCACCTCATGAATAAAGTTAAACCTTAACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACATTTTCCCAACCACCTCATGAATAAAGTTAAACCTTAACCATT  432

seq1  TTGTTCAGTATGGAGTTGTTTTTGTTCCATAAAAATTGTCTCATCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTATGGAGTTGTTTTTGTTCCATAAAAATTGTCTCATCTGAAA  482

seq1  TTATTAATTTTCTGAAATACACTAATACAAATATAGCCTTTCATTGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTTTCTGAAATACACTAATACAAATATAGCCTTTCATTGCTTA  532

seq1  ACTTGAGCTGAGATTGAAACCTTTACACCAAAATATTTTACTTTATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCTGAGATTGAAACCTTTACACCAAAATATTTTACTTTATAGCT  582

seq1  GCTTTTTATTATTTTGCATTTGAGAGTTCCCCTGTAGTTTGTGGTGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATTATTTTGCATTTGAGAGTTCCCCTGTAGTTTGTGGTGGCCT  632

seq1  GGAACTCTCTGTGTATCCCAAGCCCAAAGAAAGCTACTAAAACAACTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTCTGTGTATCCCAAGCCCAAAGAAAGCTACTAAAACAACTACC  682

seq1  CAGTCATATATGTGTGTGTTTGTATGTGTGTGTATGTTTATGTACATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATATATGTGTGTGTTTGTATGTGTGTGTATGTTTATGTACATATA  732

seq1  TATGCATCTATCTGTCTATCTGTCTATCTATATATCTATTTATCTATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCTATCTGTCTATCTGTCTATCTATATATCTATTTATCTATGTT  782

seq1  ACTAAAGAGAAAAATCAGAATGCTGTTTCAATCTTCCTTATTCATCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAGAAAAATCAGAATGCTGTTTCAATCTTCCTTATTCATCATAA  832

seq1  TCATATGAAAAATTTATAATAGCTGGTAATTTTTCTATCATTTTGTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAAAAATTTATAATAGCTGGTAATTTTTCTATCATTTTGTTGTA  882

seq1  GTTTTCACAATATTTGCTAGCAGTATAGAAATTAGGCATGGGGCAAATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACAATATTTGCTAGCAGTATAGAAATTAGGCATGGGGCAAATGC  932

seq1  AGTTATTAAGAACAGGGCAGATATGGAAAAGAGAAAATGCCCATTAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAAGAACAGGGCAGATATGGAAAAGAGAAAATGCCCATTAATAA  982

seq1  GCTATTATATAAAAAGCTTTGGGCAGAACTAAAGTAAATAAACAGGTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATATAAAAAGCTTTGGGCAGAACTAAAGTAAATAAACAGGTTAA  1032

seq1  AAATCTTATTGAAATTTCTCATCTGTAATATTCCCATGGAAAAAAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATTGAAATTTCTCATCTGTAATATTCCCATGGAAAAAAGAATT  1082

seq1  C  1101
      |
seq2  C  1083