BAC Information

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BAC

Clone NameB6Ng01-119P13
Chromosome17 (Build37)2 (Build37)
Map Location 56,883,397 - 56,883,61264,754,228 - 64,755,358
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1
Downstream geneNrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119P13.bB6Ng01-119P13.g
ACCDH924042DH924043
length1461,114
definitionDH924042|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P13, 5' end.DH924043|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,883,397 - 56,883,612)(64,754,228 - 64,755,358)
sequence
caggacagccagggctatacagagaaaacctgtctcagaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaacgaaaagaaagacagaagacagagagagaga
gagagagagagagagagagagagagagagagagggagggagggagg
gaattccctagtagcaatggacttctcaggtgagaagagcagagtcatag
acaaccccactgaagcgctttcggttgctgttgaggaaggcctcgcgtgg
agggtaccagcagcttcatttatctcaaatgttcatggtttgagtcattt
tatccgagaagttgagttttacttttgttccttttcttgctcagaaaaaa
ggctgtttacgcctggggaatcacggaagccccagtgccccctcccagag
ctctgctgtgaacatgggtatgtttgctctctgtcagattgatgttcctt
tagatacggtcacatgggatgggacagggattgcatgcagtgaaatcagg
atcacgacagacaaacctttgtcttcttcccccagctctccatcggtccc
aaccatggtttcaccacagaatttccagagatgaggctcagcggctgatc
attcggcaggggcctgtggatgggtaagtctgagtggtcatgtttggatt
tttttctatgtatgcatgataattatttaacacatgctatgaaattatga
ctgtgccttgtcacaaagcagaagaacttttgttacataagcgtggttgt
cactgcattctattggtgtttaatatttgtgcacaaatgtccaaataaca
ggatactttatccttgaccagttagcattaatattcactttatttgtgtg
gattctatcatctcagactctaatgtatgagtgggggtagcctagtctga
ttgagatgtcaacattttggtttgcacatacaatagatatgctcccaaat
gtatttcatagcatgatgttgtcctgaattggttttcttggatatgatgc
aaataccttagttgaaaagctttttcctatatattttgaattcttgcctg
gtttatttttctcttaatatctgtattgccatttgtaaaatagtatagct
ataaattacttgtggtgatatctctcatgttttattgtgtattatggagt
atagagagaggataagatgacttatggagcagttaatcagaagcctttcc
attatgagtaatattcatccactctggataatcagcagaatttttttctt
actgccaagcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56883397_56883612
seq2: B6Ng01-119P13.b_53_198 (reverse)

seq1  CCTCCCTCCCTCCCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTT  50
      ||||||||||||||||||||||||||||| ||||||| ||||||      
seq2  CCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC------  44

seq1  TCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  100
                                                        
seq2  --------------------------------------------------  44

seq1  TTTCTTTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  150
            ||||||||||||| ||     |||| ||||||||  ||  ||| 
seq2  ------TCTCTCTCTCTCTGTC-----TTCTGTCTTTCTT--TTCGTTTT  81

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTCGAGACAGGGTTTCTCTGTGT  200
      ||| ||| ||| ||| ||| ||| ||||| |||||||| ||||||||| |
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTCT-GAGACAGGTTTTCTCTGTAT  130

seq1  AGCCCTGGCTGTCCTG  216
      ||||||||||||||||
seq2  AGCCCTGGCTGTCCTG  146

seq1: chr2_64754228_64755358
seq2: B6Ng01-119P13.g_68_1181 (reverse)

seq1  ATTTGCTCTGCAGTTAAGAAAAAAATCTGGCTAGAATTATACAGAGTGGA  50
      |||||||  |||| ||||||||||||   |||   ||||| |||||||||
seq2  ATTTGCTTGGCAG-TAAGAAAAAAATTCTGCT--GATTATCCAGAGTGGA  47

seq1  TGAAATATACTCAATAAAATGGAAAAGCCTTCTGATTTAACTGCTCCATA  100
      ||||   |||||   | ||||| |||| ||||||| ||||||||||||||
seq2  TGAATATTACTC---ATAATGG-AAAGGCTTCTGA-TTAACTGCTCCATA  92

seq1  AGTCATTCTATCCTCCTCTCTTATACTCCATAATACACAATAAAAACAAT  150
      ||||||  |||||| ||||| ||||||||||||||||||||||||   ||
seq2  AGTCATCTTATCCT-CTCTC-TATACTCCATAATACACAATAAAA--CAT  138

seq1  GAGAGATATCACCAACAAGTAATTTTATAGCTATTACTATTTTAACAAAA  200
      ||||||||||||| |||||||| |||||||||| ||||||||||   |||
seq2  GAGAGATATCACC-ACAAGTAA-TTTATAGCTA-TACTATTTTA--CAAA  183

seq1  TGGCAATACAGATATTAAGAGAAAAATAAACCAGGCAAGAATTCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATACAGATATTAAGAGAAAAATAAACCAGGCAAGAATTCAAAATA  233

seq1  TATAGGAAAAAGCTTTTCAACTAAGGTATTTGCATCATATCCAAGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAAAAAGCTTTTCAACTAAGGTATTTGCATCATATCCAAGAAAAC  283

seq1  CAATTCAGGACAACATCATGCTATGAAATACATTTGGGAGCATATCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGGACAACATCATGCTATGAAATACATTTGGGAGCATATCTATT  333

seq1  GTATGTGCAAACCAAAATGTTGACATCTCAATCAGACTAGGCTACCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCAAACCAAAATGTTGACATCTCAATCAGACTAGGCTACCCCCA  383

seq1  CTCATACATTAGAGTCTGAGATGATAGAATCCACACAAATAAAGTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACATTAGAGTCTGAGATGATAGAATCCACACAAATAAAGTGAATA  433

seq1  TTAATGCTAACTGGTCAAGGATAAAGTATCCTGTTATTTGGACATTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTAACTGGTCAAGGATAAAGTATCCTGTTATTTGGACATTTGTG  483

seq1  CACAAATATTAAACACCAATAGAATGCAGTGACAACCACGCTTATGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATTAAACACCAATAGAATGCAGTGACAACCACGCTTATGTAAC  533

seq1  AAAAGTTCTTCTGCTTTGTGACAAGGCACAGTCATAATTTCATAGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTTCTGCTTTGTGACAAGGCACAGTCATAATTTCATAGCATGT  583

seq1  GTTAAATAATTATCATGCATACATAGAAAAAAATCCAAACATGACCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAATTATCATGCATACATAGAAAAAAATCCAAACATGACCACTC  633

seq1  AGACTTACCCATCCACAGGCCCCTGCCGAATGATCAGCCGCTGAGCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACCCATCCACAGGCCCCTGCCGAATGATCAGCCGCTGAGCCTCA  683

seq1  TCTCTGGAAATTCTGTGGTGAAACCATGGTTGGGACCGATGGAGAGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAATTCTGTGGTGAAACCATGGTTGGGACCGATGGAGAGCTGG  733

seq1  GGGAAGAAGACAAAGGTTTGTCTGTCGTGATCCTGATTTCACTGCATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAGACAAAGGTTTGTCTGTCGTGATCCTGATTTCACTGCATGCA  783

seq1  ATCCCTGTCCCATCCCATGTGACCGTATCTAAAGGAACATCAATCTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTCCCATCCCATGTGACCGTATCTAAAGGAACATCAATCTGACA  833

seq1  GAGAGCAAACATACCCATGTTCACAGCAGAGCTCTGGGAGGGGGCACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAACATACCCATGTTCACAGCAGAGCTCTGGGAGGGGGCACTGG  883

seq1  GGCTTCCGTGATTCCCCAGGCGTAAACAGCCTTTTTTCTGAGCAAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCGTGATTCCCCAGGCGTAAACAGCCTTTTTTCTGAGCAAGAAAA  933

seq1  GGAACAAAAGTAAAACTCAACTTCTCGGATAAAATGACTCAAACCATGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAAGTAAAACTCAACTTCTCGGATAAAATGACTCAAACCATGAA  983

seq1  CATTTGAGATAAATGAAGCTGCTGGTACCCTCCACGCGAGGCCTTCCTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGATAAATGAAGCTGCTGGTACCCTCCACGCGAGGCCTTCCTCA  1033

seq1  ACAGCAACCGAAAGCGCTTCAGTGGGGTTGTCTATGACTCTGCTCTTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACCGAAAGCGCTTCAGTGGGGTTGTCTATGACTCTGCTCTTCTC  1083

seq1  ACCTGAGAAGTCCATTGCTACTAGGGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  ACCTGAGAAGTCCATTGCTACTAGGGAATTC  1114