BAC Information

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BAC

Clone NameB6Ng01-121M19
Chromosome18 (Build37)17 (Build37)
Map Location 14,558,351 - 14,558,42964,896,962 - 64,898,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391
Downstream geneLOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M19.bB6Ng01-121M19.g
ACCDH925390DH925391
length901,160
definitionDH925390|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M19, 5' end.DH925391|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,558,351 - 14,558,429)(64,896,962 - 64,898,216)
sequence
actgatctcataggaggaggtcagagaacttgccttacagacatggaggt
gtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgt
gaattccatgcctcagcacagatggcattcctaccacactgtttcctgtg
tccacaggaatcacaacatgtctatacccggccttccataatgaccgtat
tgcacaatctcaggccctgttcacatatattctgccgttcactcagccat
ctcagcagggagctgggcactgaatgattgtcacttcagtccatactgtc
tggtcacaggtcggtgctcggggtacaaaaccgaacagcaatcaagtcag
cttaatttcagaggaaacaggatgtctgagctactggaggtagtcatttt
catcttaaaagtagttgcttaatatctccagctgtacttactgaagaaga
aagcgggcacagctgacgctgaaatttagtagacagacatggaattcaat
cactgaactcactctcacctccgcttgggccagccaatgtttactgttga
ggtcaacaatagccctgggaaaagctgtcttgaatggcagtcaccatctt
caatgaacttcggaaactcatccggtcttgaagcaaggacatgggtttct
aaggatgtctttgcttgagttggtctcagttcaagtctgtctttcaagct
gctgtcaagcaaatctgggcaagtgacacatttcgctgaacttaaaacat
gtacctctatgtaatagcagctatacaacatgggtattagaggggaaact
ccaataattattataaagagcggtaccgggtcagtcggggctccttagaa
ggcaagtctaaatctagtttctcagccaaggactgggctgaaatattcat
gtgcctaccgattcatttgcctctccctccttctggccatgaaagagcat
tcatccattagtgaaactctttgagaagaaaacagacccaatgcgtttct
gttctgcagtctacgggcgctctctctgttggccacgttcacactgccac
agtcatgaaacttctaataatgttttcactcaacttctgcctcttggcag
catgggcaaaccaccctgcagctgttcatttcgcagagggatccctcgcc
aatcactgaaagccacctgctgtgaggggcaactgctctcaaatactgca
gcagggaagtgacagagcctataggtcaacgggattctctatgaaggaga
gacagaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14558351_14558429
seq2: B6Ng01-121M19.b_95_144 (reverse)

seq1  ACACACACACAATCTTGGCTTTTATACACACACACACAAACACACACACT  50
                                   ||||||||| |||||||||| 
seq2  -----------------------------ACACACACACACACACACACA  21

seq1  CACACACACACTCACACACACCTCCATGT  79
      || |||||||| |||||||||||||||||
seq2  CAAACACACACACACACACACCTCCATGT  50

seq1: chr17_64896962_64898216
seq2: B6Ng01-121M19.g_67_1226

seq1  GAATTCCATGCCTCAGCACAGATGGCATTCCTACCACACTGTTTCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTCAGCACAGATGGCATTCCTACCACACTGTTTCCTGTG  50

seq1  TCCACAGGAATCACAACATGTCTATACCCGGCCTTCCATAATGACCGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAATCACAACATGTCTATACCCGGCCTTCCATAATGACCGTAT  100

seq1  TGCACAATCTCAGGCCCTGTTCACATATATTCTGCCGTTCACTCAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATCTCAGGCCCTGTTCACATATATTCTGCCGTTCACTCAGCCAT  150

seq1  CTCAGCAGGGAGCTGGGCACTGAATGATTGTCACTTCAGTCCATACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGGAGCTGGGCACTGAATGATTGTCACTTCAGTCCATACTGTC  200

seq1  TGGTCACAGGTCGGTGCTCGGGGTACAAAACCGAACAGCAATCAAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGGTCGGTGCTCGGGGTACAAAACCGAACAGCAATCAAGTCAG  250

seq1  CTTAATTTCAGAGGAAACAGGATGTCTGAGCTACTGGAGGTAGTCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTCAGAGGAAACAGGATGTCTGAGCTACTGGAGGTAGTCATTTT  300

seq1  CATCTTAAAAGTAGTTGCTTAATATCTCCAGCTGTACTTACTGAAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAAAGTAGTTGCTTAATATCTCCAGCTGTACTTACTGAAGAAGA  350

seq1  AAGCGGGCACAGCTGACGCTGAAATTTAGTAGACAGACATGGAATTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGCACAGCTGACGCTGAAATTTAGTAGACAGACATGGAATTCAAT  400

seq1  CACTGAACTCACTCTCACCTCCGCTTGGGCCAGCCAATGTTTACTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTCACTCTCACCTCCGCTTGGGCCAGCCAATGTTTACTGTTGA  450

seq1  GGTCAACAATAGCCCTGGGAAAAGCTGTCTTGAATGGCAGTCACCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACAATAGCCCTGGGAAAAGCTGTCTTGAATGGCAGTCACCATCTT  500

seq1  CAATGAACTTCGGAAACTCATCCGGTCTTGAAGCAAGGACATGGGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTTCGGAAACTCATCCGGTCTTGAAGCAAGGACATGGGTTTCT  550

seq1  AAGGATGTCTTTGCTTGAGTTGGTCTCAGTTCAAGTCTGTCTTTCAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTCTTTGCTTGAGTTGGTCTCAGTTCAAGTCTGTCTTTCAAGCT  600

seq1  GCTGTCAAGCAAATCTGGGCAAGTGACACATTTCGCTGAACTTAAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAAGCAAATCTGGGCAAGTGACACATTTCGCTGAACTTAAAACAT  650

seq1  GTACCTCTATGTAATAGCAGCTATACAACATGGGTATTAGAGGGGAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTATGTAATAGCAGCTATACAACATGGGTATTAGAGGGGAAACT  700

seq1  CCAATAATTATTATAAAGAGCGGTACCGGGTCAGTCGGGGCTCCTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTATTATAAAGAGCGGTACCGGGTCAGTCGGGGCTCCTTAGAA  750

seq1  GGCAAGTCTAAATCTAGTTTCTCAGGCCAAGGACTGGGCTGAAATATTCA  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCAAGTCTAAATCTAGTTTCTCA-GCCAAGGACTGGGCTGAAATATTCA  799

seq1  TGTGCCTACCGATTCATTTGCCTCTCCCTCCTTCTGGCCATGAAAGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTACCGATTCATTTGCCTCTCCCTCCTTCTGGCCATGAAAGAGCA  849

seq1  TTCATCCATTAGTGAAAC-CCTTGAGAAGAAAACAGACCCAATGCGTTTC  899
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  TTCATCCATTAGTGAAACTCTTTGAGAAGAAAACAGACCCAATGCGTTTC  899

seq1  TGTTCTGCAGTCTACGGGCGCTCTCTCTGTTTGGCCACGTTCACACTGCC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTTCTGCAGTCTACGGGCGCTCTCTCTG-TTGGCCACGTTCACACTGCC  948

seq1  ACAGTCATGAAACTTCT-ATAATGTTTTCACTCAACTTCTGCCTCTTGGC  998
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGTCATGAAACTTCTAATAATGTTTTCACTCAACTTCTGCCTCTTGGC  998

seq1  AGCCATGGCCAAAACCACCCTGCAGCTG-TCA-TTCGCAAGAGGGATCCC  1046
      || ||||| | ||||||||||||||||| ||| ||||| |||||||||||
seq2  AG-CATGGGC-AAACCACCCTGCAGCTGTTCATTTCGC-AGAGGGATCCC  1045

seq1  TCGCCAATCACTGAGAGCCACCCTGCCGTGAGGGGCAGCTGCTCCAGAGT  1096
      |||||||||||||| ||||| ||||| |||||||||| ||||||   | |
seq2  TCGCCAATCACTGAAAGCCA-CCTGCTGTGAGGGGCAACTGCTCTCAAAT  1094

seq1  ACTGCAAGCAGGAAAGTGACAGAGCC-ATATGCTACCGGGAATCCC--CC  1143
      ||||| |||||| ||||||||||||| ||| |  | ||||| || |    
seq2  ACTGC-AGCAGGGAAGTGACAGAGCCTATAGGTCAACGGGATTCTCTATG  1143

seq1  AATGAG-GGCAG-GGCTCCCCAAAGGATCAGAACTTCTGCTTCCAACTCC  1191
      || ||| | ||| ||||                                 
seq2  AAGGAGAGACAGAGGCT---------------------------------  1160

seq1  TGCCTGCCAAACAGCTAAGCATGAGATCTTGCTAATAACAGCAGTGGAAA  1241
                                                        
seq2  --------------------------------------------------  1160

seq1  TGAAGACAGAGGCT  1255
                    
seq2  --------------  1160