BAC Information

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BAC

Clone NameB6Ng01-122A20
Chromosome17 (Build37)
Map Location 42,973,723 - 43,125,652
singlet/doubletdoublet
Overlap geneCd2ap
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797
Downstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122A20.bB6Ng01-122A20.g
ACCDH925580DH925581
length2291,125
definitionDH925580|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A20, 5' end.DH925581|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,125,424 - 43,125,652)(42,973,723 - 42,974,876)
sequence
attaatcactccgtgggcacctgcacgcctgcggtgcgcaaacaggtaag
caggcacacatgcacagagagagggaggagaacgaggaagaggaggagga
ggagggagggaaggagggagaaggaggtctttctttaatgcgcaccttga
atagaaatcacatacacaaggaaccacctgtcatgaatgaattgattata
aaattaatgtctagacattctttggattt
gaattcttggggagaagggtggtaaagatcactcattcactcatagcaat
gatgaactgggtatcctgtccatgcctacagtcccagagcagaggctgag
gcaggaggaacaccagtttaaggtcggtctgaatgaactatgagatccta
tctctaagagataaaaacacaaactcatttgaaaacagaatgcagtctag
cctgttggcacatgcctataacaccagtgctcgggaggtgaaaagaaagg
tgaatttgaggccagcctgagctatataatcagactctggctcagaaaca
ccaagggcccactgtgcgcagaaccctgagtttaactgttccatcaaggg
aggagaagggctttcaagacacacaagttaacaagcttcacacattcaaa
ctcaggccactgcatgtcaggcatatatgaagataaggtatctcacacca
caaatccggtcccatcaagaactgatcatttctgtgctctgccctttcac
tcttgatagttttctaagtggttctatcatttcgtagtccaaagctagac
tgtaaaaagcacttcctcatgcttgctgatacagctgtacttgggagttg
tgaaactgccatgcaaatcaaagcaccctctattcaaaatgtagtccaga
tttcagactagggaatatttacagtaactttactgaaaatctgaagcttt
ttgataatgtcaacaggtttcagaatctggcccatttcagatttgagatc
tgacatgctgccatacttgaacaaatctaatgcaaatgggaaaggactct
aaatagctgtccaagtggcagttcaagtcttcaaggctgtcagacattag
gagtgaataaaggagcttcttacgaagctctcaccagccctacttctaaa
ccttcagctgagctcaaacatcgcagacgcagacagccaccctctatctg
catacttgagcacacacccagagcatagtagtgtttttgcactaatttag
gtagttcttatgtatcagaataacagcaatagcatgtgattctgtgactc
atccttacctctgagaaatgaagataatttccttctttggacataacggt
ccagaataatgtgtatcgacttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43125424_43125652
seq2: B6Ng01-122A20.b_54_282 (reverse)

seq1  AAGTCCAATGAATGTCTTGACAATGCTTTTATAATCAATTCATTCATGAC  50
      || ||||| |||||||| |||| |  ||||||||||||||||||||||||
seq2  AAATCCAAAGAATGTCTAGACATTAATTTTATAATCAATTCATTCATGAC  50

seq1  AGGTGGTTCCCTGTGTTTGTGATTTCTCTTCAAGCTGCGCATCAAAGCAA  100
      |||||||||| ||||| |||||||||| |||||| ||||||| |||| ||
seq2  AGGTGGTTCCTTGTGTATGTGATTTCTATTCAAGGTGCGCATTAAAGAAA  100

seq1  CCCCTCCTTCTCCCTCCTTCCCTCCCTCCTCCTCCTCCTCTTCCTCGTTC  150
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTTCTCCCTCCTTCCCTCCCTCCTCCTCCTCCTCTTCCTCGTTC  150

seq1  TCCTCCCTCTCTCTGTGCATGTGTGCCTGCTTACCTGTTTGCGCACCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCTCTCTGTGCATGTGTGCCTGCTTACCTGTTTGCGCACCGCA  200

seq1  GGCGTGCAGGTGCCCACGGAGTGATTAAT  229
      |||||||||||||||||||||||||||||
seq2  GGCGTGCAGGTGCCCACGGAGTGATTAAT  229

seq1: chr17_42973723_42974876
seq2: B6Ng01-122A20.g_66_1190

seq1  GAATTCTTGGGGAGAAGGGTGGTAAAGATCACTCATTCACTCATAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGAGAAGGGTGGTAAAGATCACTCATTCACTCATAGCAAT  50

seq1  GATGAACTGGGTATCCTGTCCATGCCTACAGTCCCAGAGCAGAGGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTGGGTATCCTGTCCATGCCTACAGTCCCAGAGCAGAGGCTGAG  100

seq1  GCAGGAGGAACACCAGTTTAAGGTCGGTCTGAATGAACTATGAGATCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAACACCAGTTTAAGGTCGGTCTGAATGAACTATGAGATCCTA  150

seq1  TCTCTAAGAGATAAAAACACAAACTCATTTGAAAACAGAATGCAGTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGAGATAAAAACACAAACTCATTTGAAAACAGAATGCAGTCTAG  200

seq1  CCTGTTGGCACATGCCTATAACACCAGTGCTCGGGAGGTGAAAAGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGCACATGCCTATAACACCAGTGCTCGGGAGGTGAAAAGAAAGG  250

seq1  TGAATTTGAGGCCAGCCTGAGCTATATAATCAGACTCTGGCTCAGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGAGGCCAGCCTGAGCTATATAATCAGACTCTGGCTCAGAAACA  300

seq1  CCAAGGGCCCACTGTGCGCAGAACCCTGAGTTTAACTGTTCCATCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCCCACTGTGCGCAGAACCCTGAGTTTAACTGTTCCATCAAGGG  350

seq1  AGGAGAAGGGCTTTCAAGACACACAAGTTAACAAGCTTCACACATTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGGCTTTCAAGACACACAAGTTAACAAGCTTCACACATTCAAA  400

seq1  CTCAGGCCACTGCATGTCAGGCATATATGAAGATAAGGTATCTCACACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCACTGCATGTCAGGCATATATGAAGATAAGGTATCTCACACCA  450

seq1  CAAATCCGGTCCCATCAAGAACTGATCATTTCTGTGCTCTGCCCTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCGGTCCCATCAAGAACTGATCATTTCTGTGCTCTGCCCTTTCAC  500

seq1  TCTTGATAGTTTTCTAAGTGGTTCTATCATTTCGTAGTCCAAAGCTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAGTTTTCTAAGTGGTTCTATCATTTCGTAGTCCAAAGCTAGAC  550

seq1  TGTAAAAAGCACTTCCTCATGCTTGCTGATACAGCTGTACTTGGGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGCACTTCCTCATGCTTGCTGATACAGCTGTACTTGGGAGTTG  600

seq1  TGAAACTGCCATGCAAATCAAAGCACCCTCTATTCAAAATGTAGTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGCCATGCAAATCAAAGCACCCTCTATTCAAAATGTAGTCCAGA  650

seq1  TTTCAGACTAGGGAATATTTACAGTAACTTTACTGAAAATCTGAAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTAGGGAATATTTACAGTAACTTTACTGAAAATCTGAAGCTTT  700

seq1  TTGATAATGTCAACAGGTTTCAGAATCTGGCCCATTTCAGATTTGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATGTCAACAGGTTTCAGAATCTGGCCCATTTCAGATTTGAGATC  750

seq1  TGACATGCTGCCATACTTGAACAAATCTAATGCAAATGGG-AAGGACTCT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACATGCTGCCATACTTGAACAAATCTAATGCAAATGGGAAAGGACTCT  800

seq1  AAATAGCTGTCCAAGTGGCAGTTCAAGTCTTCAAGGCTGTCAGACATTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTGTCCAAGTGGCAGTTCAAGTCTTCAAGGCTGTCAGACATTAG  850

seq1  GAGTGAATAAAGGAGCTTTCTTACGAAGGCTCTCACCAGCCCTACTTCTA  899
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  GAGTGAATAAAGGAGC-TTCTTACGAA-GCTCTCACCAGCCCTACTTCTA  898

seq1  AACCTTTCCAGCTGAGGCTCCAAACATCGCAGAACGCAGACAAGCCAACC  949
      ||||||  ||||||| ||| |||||||||||| |||||||| |||| |||
seq2  AACCTT--CAGCTGA-GCT-CAAACATCGCAG-ACGCAGAC-AGCC-ACC  941

seq1  CTCCTATCTGCATACTTGAGCCACACAACCCAGAAGCAAATTAGTAGTTG  999
      || ||||||||||||||||| ||||| |||||| ||||   |||||| ||
seq2  CT-CTATCTGCATACTTGAG-CACAC-ACCCAG-AGCA---TAGTAG-TG  983

seq1  TTTTTGCCACTAATTTTAGGTTAGTTTCTTATGTATCAAGAATAACAGCA  1049
      |||||| |||||| |||||| ||| |||||||||||| ||||||||||||
seq2  TTTTTG-CACTAA-TTTAGG-TAG-TTCTTATGTATC-AGAATAACAGCA  1028

seq1  ATAAGCAATGTGATTCTGTGACTCAATCTCTACCTCTGAGAAATGAAGAT  1099
      || ||| ||||||||||||||||| |||  ||||||||||||||||||||
seq2  AT-AGC-ATGTGATTCTGTGACTC-ATCCTTACCTCTGAGAAATGAAGAT  1075

seq1  AAATATTCCTTCTCTTAGAC-TAACGTTCAAAGGAAATAAATGTG-ATCG  1147
      ||   |||||||| || ||| ||||| || |  |||   |||||| ||||
seq2  AA--TTTCCTTCT-TTGGACATAACGGTCCA--GAA--TAATGTGTATCG  1118

seq1  ACTTATT  1154
      |||||||
seq2  ACTTATT  1125