BAC Information

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BAC

Clone NameB6Ng01-122G02
Chromosome17 (Build37)
Map Location 46,141,672 - 46,142,068
singlet/doubletsinglet
Overlap genenone
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122G02.bB6Ng01-122G02.g
ACCDH925821DH925822
length5491,145
definitionDH925821|Mus musculus domesticus DNA, BAC clone: B6Ng01-122G02, 5' end.DH925822|Mus musculus domesticus DNA, BAC clone: B6Ng01-122G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
atctggccttgccacctttgtaatttcctacaggagctttgaggagttga
ctgtctactgagcttcctttgcaaatcaatccagctgaaacaaaggatgg
ggtctgtaggctttctctgtatacacagagttgaaaattaagctttcctt
ggtctgaaattttgtcttgactgcatctttctctcacaccagttcttttt
catttatagcccccctttaaggtaacccagctaatctgtggatgcttgac
agctacagagaaggaggagctagccctaatgccaggaaaagtgtagctac
catagctgagacataaaggacagagagtcagccaacattaaagagctggg
gaagagcagccctaggaggctaaccaactgggtctacagaaacagaactg
gaataaagattttaatattaagtttataatataggaggagtgtgttagcc
atgcagatgtttggaagtggcccagccattgaactatttaagacatatta
aaatagaaggccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctttgtttagccctgagcctcatttttaatggggttattggtata
ggtttctatccacatcctctgctctatctcaatgccctatatgactgttt
ctagggcagtactgaagtgttcttatcgctatggatctgtggcataattt
gaaatcaggaatagtgatacctccggacatatcactagctctcacaactt
cattgccatttatgtttccatttaaattttagagtgtctttttaaatttc
tgtaatgaataatacaggcattatggtaacaattgcactttcacaatatt
taggctttcagtcgctgagcatgggaagtcttttcatcttcttctgtctt
tctccattttgctctgttttaaagcttgtattgcaagcttgtattccact
tccttggtttggtttattccaatacattgtgatagtcttggggtgatttt
gaatatgataagtttactgtttctttttcacctatgcctttcgtgggtat
ataaaaacgttacttacttttgtatgtttattttatattctgcacatctg
gaagtgccacttttgaaagtgtttatctctatgtgatttttgggttccag
gtgttgcctcacaaaccacatgcacatggatctcagtcagacaaggatag
tttattgagctctattggttgatcaaggatgcagaccagactcaggagct
agctctgaccatgaggcaggattctccatagcttttgagccttgcaatcc
atagaaatctgtgccaactctctccaccattcaggatcaagggataggcc
acttccttaagaacatgtctttgttgtacatttactctgctctcattgct
tggggctgttgaatgtggaagaaggcttgccttacctaacatatatttct
taatttctatcagatgtctatacttatacacatgtctctttctgcctata
gtagatgtcaatcccagggagtctaggacttttttgaccccaagccaatg
aagtcttattccaaatacttctatatggtgtacctttcctccctttgggg
gtactcggagatacttattggcaaaggaacataagaatcttactaacaga
atcaagacactcctcaatatcggatgggaactcacttactagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46141672_46142068
seq2: B6Ng01-122G02.b_548_601 (reverse)

seq1  CACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTGGGCCTCCATCCTCCCTGATCTGCAACTCAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTAAAATCCTTTCTAGTCCTTAATCTAAACTGAGGCTTATTTAAATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATACTTATTTATATATATGTGTGTGTGCATGTGTATGTGTGCATACATGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTGCTTGCACTCAAGAGAGAATGAGCACACGTGTACGTGCGCGCGTAC  250
                                               | | |  ||
seq2  -----------------------------------------CACACACAC  9

seq1  ACACACACACACACACACACACACACGCTTGTGCAGTTCTCTCCTATTAT  300
      |||||||||||||||||||||||||||   | ||  |||| |  || || 
seq2  ACACACACACACACACACACACACACG---GGGC-CTTCTATTTTAATA-  54

seq1  GTGGGTTGTGGGATCAAATTCAGATCATCAGACTTAGTGAGAACTGGTAC  350
                                                        
seq2  --------------------------------------------------  54

seq1  CTTTACCCACTAAGCCATCTCTCCGCCCCTAAGCAGGGATTTTAATA  397
                                                     
seq2  -----------------------------------------------  54