BAC Information

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BAC

Clone NameB6Ng01-122H07
Chromosome17 (Build37)
Map Location 15,429,897 - 15,534,639
singlet/doubletdoublet
Overlap geneLOC664953, Dll1, LOC100041314, 4932442K08Rik
Upstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19
Downstream genePsmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H07.bB6Ng01-122H07.g
ACCDH925873DH925874
length216938
definitionDH925873|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H07, 5' end.DH925874|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,429,897 - 15,430,112)(15,533,702 - 15,534,639)
sequence
accacctgttcaggccttcctatcccaaaccacctgaaccaccaatgaaa
atggtgtggattgagcactgggtagctccggaagtggagacgtcagcttg
tctcctacatgacgtgatttacacaaacgaaaattgtattattgtagaat
tgcttttatctttaaatttgattggtgctgtttggaaaccgtggagagtg
tgtagttggggggggg
gaattccaagcagtagggtgggcttttctaccctgaaatgtctcccatac
gctaggatcaatgcttatttggaaaaaataaatgaataaaaccaggggca
gatggatgtattaagtgagatcaagaaccaattcacagtttatagactcc
cattatagccagagagagcgatggagagaaataatgcctaacaataaaat
taaaactatttatacttggtattaagttctgtagcaacaattgatagcat
tatgtggaatgcatccttcttaccaaggtggagtcaactcagaaagtaaa
tgaaattagtttagtatctgcaacacagaagttacaatgctctacccaat
gaccaggcctttctttcaaataccaagcacaccttgaagatggtggaaat
ggggaggggaaaactgggacaagaacacttgcaaagcagcaacataagat
aaatagcaagttgtaaaggctctataattatgaacagaggggtgttgtat
tcacagtacactgaaatcaaggactccgaagccaaagcttggattcgtga
acttttcattatcagttccataaatatatccagactccagttcagagata
agagtagagtctttgagtgtggaaaataaatgatttcaaatgctctccac
gtaagttttttggggggggccaaaggtgttcacagatataaacgtctgga
agactggctgaacagatattttttttaaactgggaggtgctatagtcaag
gtgggggcaagagaaataacgcatcagttgctggtgcctttcaaaaacag
gtaaagaaaaaagtagccaggcgttcgtacactacctaatgtcagtcgag
gtcaggagctatcctctaatggatgggagatagggaaaatgatgagagac
attgggacgtgggtaccagcaagtccctaaggtggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15429897_15430112
seq2: B6Ng01-122H07.b_50_265

seq1  ACCACCTGTTCAGGCCTTCCTATCCCAAACCACCTGAACCACCAATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGTTCAGGCCTTCCTATCCCAAACCACCTGAACCACCAATGAAA  50

seq1  ATGGTGTGGATTGAGCACTGGGTAGCTCCGGAAGTGGAGACGTCAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGGATTGAGCACTGGGTAGCTCCGGAAGTGGAGACGTCAGCTTG  100

seq1  TCTCCTACATGACGTGATTTACACAAACGAAAATTGTATTATTGTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACATGACGTGATTTACACAAACGAAAATTGTATTATTGTAGAAT  150

seq1  TGCTTTTATCTTTAAATTTGATTGGTGCTGTTTGGAAACCGTGGAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATCTTTAAATTTGATTGGTGCTGTTTGGAAACCGTGGAGAGTG  200

seq1  TGTAGTTGGGGGGGGG  216
      ||||||||||||||||
seq2  TGTAGTTGGGGGGGGG  216

seq1: chr17_15533702_15534639
seq2: B6Ng01-122H07.g_67_1004 (reverse)

seq1  TTTCCACCTTAGGGACTTGCTGTTACCCACGT-CCAATGTCTCTCATCAT  49
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  TTTCCACCTTAGGGACTTGCTGGTACCCACGTCCCAATGTCTCTCATCAT  50

seq1  TTTCCCTATCTCCCATCCATTAGAGGATAGCTCCTGACCTCGACTGACAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATCTCCCATCCATTAGAGGATAGCTCCTGACCTCGACTGACAT  100

seq1  TAGGTTAGTGTACGAACGCCTGGCTACTTTTTTCTTTACCTGTTTTTGAA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGG-TAGTGTACGAACGCCTGGCTACTTTTTTCTTTACCTGTTTTTGAA  149

seq1  AGGCACCAGCAACTGATGCGTTATTTCTCTTGCCCCCACCTTGACTATAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAGCAACTGATGCGTTATTTCTCTTGCCCCCACCTTGACTATAG  199

seq1  CACCTCCCAGTTTAAAAAAAATATCTGTTCAGCCAGTCTTCCAGACGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCAGTTTAAAAAAAATATCTGTTCAGCCAGTCTTCCAGACGTTT  249

seq1  ATATCTGTGAACACCTTTGGCCCCCCCCAAAAAACTTACGTGGAGAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTGAACACCTTTGGCCCCCCCCAAAAAACTTACGTGGAGAGCAT  299

seq1  TTGAAATCATTTATTTTCCACACTCAAAGACTCTACTCTTATCTCTGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCATTTATTTTCCACACTCAAAGACTCTACTCTTATCTCTGAAC  349

seq1  TGGAGTCTGGATATATTTATGGAACTGATAATGAAAAGTTCACGAATCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTGGATATATTTATGGAACTGATAATGAAAAGTTCACGAATCCA  399

seq1  AGCTTTGGCTTCGGAGTCCTTGATTTCAGTGTACTGTGAATACAACACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCTTCGGAGTCCTTGATTTCAGTGTACTGTGAATACAACACCC  449

seq1  CTCTGTTCATAATTATAGAGCCTTTACAACTTGCTATTTATCTTATGTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCATAATTATAGAGCCTTTACAACTTGCTATTTATCTTATGTTG  499

seq1  CTGCTTTGCAAGTGTTCTTGTCCCAGTTTTCCCCTCCCCATTTCCACCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGCAAGTGTTCTTGTCCCAGTTTTCCCCTCCCCATTTCCACCAT  549

seq1  CTTCAAGGTGTGCTTGGTATTTGAAAGAAAGGCCTGGTCATTGGGTAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGTGTGCTTGGTATTTGAAAGAAAGGCCTGGTCATTGGGTAGAG  599

seq1  CATTGTAACTTCTGTGTTGCAGATACTAAACTAATTTCATTTACTTTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAACTTCTGTGTTGCAGATACTAAACTAATTTCATTTACTTTCTG  649

seq1  AGTTGACTCCACCTTGGTAAGAAGGATGCATTCCACATAATGCTATCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTCCACCTTGGTAAGAAGGATGCATTCCACATAATGCTATCAAT  699

seq1  TGTTGCTACAGAACTTAATACCAAGTATAAATAGTTTTAATTTTATTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTACAGAACTTAATACCAAGTATAAATAGTTTTAATTTTATTGTT  749

seq1  AGGCATTATTTCTCTCCATCGCTCTCTCTGGCTATAATGGGAGTCTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTATTTCTCTCCATCGCTCTCTCTGGCTATAATGGGAGTCTATAA  799

seq1  ACTGTGAATTGGTTCTTGATCTCACTTAATACATCCATCTGCCCCTGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAATTGGTTCTTGATCTCACTTAATACATCCATCTGCCCCTGGTT  849

seq1  TTATTCATTTATTTTTTCCAAATAAGCATTGATCCTAGCGTATGGGAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTTATTTTTTCCAAATAAGCATTGATCCTAGCGTATGGGAGAC  899

seq1  ATTTCAGGGTAGAAAAGCCCACCCTACTGCTTGGAATTC  938
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGGTAGAAAAGCCCACCCTACTGCTTGGAATTC  938