BAC Information

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BAC

Clone NameB6Ng01-122L23
Chromosome17 (Build37)
Map Location 43,616,608 - 43,766,317
singlet/doubletdoublet
Overlap geneMep1a, LOC100043332, Pla2g7, Tdrd6
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
Downstream geneSlc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5, Runx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L23.bB6Ng01-122L23.g
ACCDH926092DH926093
length1,134850
definitionDH926092|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L23, 5' end.DH926093|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,616,608 - 43,617,754)(43,765,468 - 43,766,317)
sequence
gaattccatcaaatagacattttaggagtcaaaaatcaaacaaagggtac
attccatggttcatcctttgacatgttgccaaaaatctgtttgtctagac
tttttcttgtacatttgggaattctggtgtagaggagactgaggaatcca
gggttagccgaagccagtgactgttctaagagcagactagatctatttgc
ttttcgctgaggctgaactggaagtgggaggtttgaacaaaaaccttagg
aaagggaatgaggggcccatctagagtatggaagcctgagatgaacagca
cgagagagaagccaaggggtaatggggagaagtactaggagagagtaatt
cagaatgtcccaaacctaggcaaacaaagtcttaaatgaagttgaaaggg
gacccgattggtgtcccctctcctcccctgcatcttctagtcagagctaa
gcttttcccagaacaaaagcctgggcattcctcttgtcctctggtccttc
taaggctaaccatggagacaagctcccgggtggagctggtcacagttgct
cagacacataagacaaagctgaaaggatgcatggaccacatcagtaacct
ggcaatctatgtagctgtcaacttttgcatgaggacacatgaactggaaa
tatgatgggtgacttaaagcctaagacggggacaaaaacacagacatgaa
ccaagcactcagcagattccagatcatgggacttccaatgagagaatgaa
agttcacttcttgcttccgagtaaccgcttcactcttatgttttgagctt
ggaatgtgggtcacggtagtagtagacagaccctagacactgggccacat
gagcacagactttttagatgagattttcaagtttttacctaagtgatagg
tttccctgaatcacgtggtagtgatacctcgattgtttgagccaaacttt
gtctgtgtagttcagaaggccatctattaaagtcctggcctcactataaa
catagctgtgtatatatacaatatgtgagcatgttaaacttctatttgta
tgtaacatcttgtatagttaaatataaaatctttagacctatatttggca
cgttgataaggatattctagacacattttatgta
gaattcactgtcaactgcggagcctctcgcaggagatccaccgtctctct
gagagcatggcccaggtataccgggcgcctgtggggacagatgatgagga
ctctggcagtgccacctgggaggagagggaggagagccctgacaaaccgg
gatctccatgtgcttcctgtggcttggacggacagtggtaccgggctctc
ttgcttgagaccttcaggcctcagcgctgtgctcaggtgcttcacgtcga
ttacggaaggaaagaactagtaagctgcagcagcctccgctatctgctgc
cggagtattttcgaatgcctgtggtgacctacccttgtgcgttgtacgga
ctctgggactgcgggagaggctggtcccggtcccaagtaggtgatctgaa
agctctgatcctgggccaggcagtgaatgcgaagattgaattttactgtt
cctttgagcatatgtattatgtcaccctgtatggggaagatgggattaat
ctcaacagtgcattcggagtacaatcctgttgcctggctgactggtttct
tcagagccaggggatagaggaggaagaggaggaagatgaggacgaagtgg
aggcagcgtttcagtctcagtcccccgctgaggaaatggaggcggaagtt
tccctcccctccttgagatccatcaggctgaagatgaacaccttctatga
cgcccaggtggagttcgtgaagagccctccggagttctggattcgccttt
gaagcacatgaacacctttcagcaagctgacgagagaatgtgcagttttc
tattcttctgccagtaagttggatggggtaattttgagaccaaaccggag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43616608_43617754
seq2: B6Ng01-122L23.b_49_1182

seq1  GAATTCCATCAAATAGACATTTTAGGAGTCAAAAATCAAACAAAGGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAATAGACATTTTAGGAGTCAAAAATCAAACAAAGGGTAC  50

seq1  ATTCCATGGTTCATCCTTTGACATGTTGCCAAAAATCTGTTTGTCTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGTTCATCCTTTGACATGTTGCCAAAAATCTGTTTGTCTAGAC  100

seq1  TTTTTCTTGTACATTTGGGAATTCTGGTGTAGAGGAGACTGAGGAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTACATTTGGGAATTCTGGTGTAGAGGAGACTGAGGAATCCA  150

seq1  GGGTTAGCCGAAGCCAGTGACTGTTCTAAGAGCAGACTAGATCTATTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGCCGAAGCCAGTGACTGTTCTAAGAGCAGACTAGATCTATTTGC  200

seq1  TTTTCGCTGAGGCTGAACTGGAAGTGGGAGGTTTGAACAAAAACCTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCTGAGGCTGAACTGGAAGTGGGAGGTTTGAACAAAAACCTTAGG  250

seq1  AAAGGGAATGAGGGGCCCATCTAGAGTATGGAAGCCTGAGATGAACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATGAGGGGCCCATCTAGAGTATGGAAGCCTGAGATGAACAGCA  300

seq1  CGAGAGAGAAGCCAAGGGGTAATGGGGAGAAGTACTAGGAGAGAGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGAAGCCAAGGGGTAATGGGGAGAAGTACTAGGAGAGAGTAATT  350

seq1  CAGAATGTCCCAAACCTAGGCAAACAAAGTCTTAAATGAAGTTGAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCCCAAACCTAGGCAAACAAAGTCTTAAATGAAGTTGAAAGGG  400

seq1  GACCCGATTGGTGTCCCCTCTCCTCCCCTGCATCTTCTAGTCAGAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGATTGGTGTCCCCTCTCCTCCCCTGCATCTTCTAGTCAGAGCTAA  450

seq1  GCTTTTCCCAGAACAAAAGCCTGGGCATTCCTCTTGTCCTCTGGTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCAGAACAAAAGCCTGGGCATTCCTCTTGTCCTCTGGTCCTTC  500

seq1  TAAGGCTAACCATGGAGACAAGCTCCCGGGTGGAGCTGGTCACAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAACCATGGAGACAAGCTCCCGGGTGGAGCTGGTCACAGTTGCT  550

seq1  CAGACACATAAGACAAAGCTGAAAGGATGCATGGACCACATCAGTAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACATAAGACAAAGCTGAAAGGATGCATGGACCACATCAGTAACCT  600

seq1  GGCAATCTATGTAGCTGTCAACTTTTGCATGAGGACACATGAACTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTATGTAGCTGTCAACTTTTGCATGAGGACACATGAACTGGAAA  650

seq1  TATGATGGGTGACTTAAAGCCTAAGACGGGGACAAAAACACAGACATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGGTGACTTAAAGCCTAAGACGGGGACAAAAACACAGACATGAA  700

seq1  CCAAGCACTCAGCAGATTCCAGATCATGGGACTTCCAATGAGAGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACTCAGCAGATTCCAGATCATGGGACTTCCAATGAGAGAATGAA  750

seq1  AGTTCACTTCTTGCTTCCGAGTAACCGCTTCACTCTTATGTTTTGAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTTCTTGCTTCCGAGTAACCGCTTCACTCTTATGTTTTGAGCTT  800

seq1  GGAATGTGGGTCAGGGTAGTAGTAGACAGACCCTAGACACTGGGCCACAT  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGGGTCACGGTAGTAGTAGACAGACCCTAGACACTGGGCCACAT  850

seq1  GAGCACAGACTTTTTAGATGAGATTTTCAAGTTTTTACCTAAGTGATAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGACTTTTTAGATGAGATTTTCAAGTTTTTACCTAAGTGATAGG  900

seq1  TTTCCCTGAATCAGGTGGTAGTGATACCTCGATTGTTTGAGCCAAACTTT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGAATCACGTGGTAGTGATACCTCGATTGTTTGAGCCAAACTTT  950

seq1  GTCTGTGGTAGTTCAGAAGGGCCATCTATTAAAGGTCCTGGCCTCACTAT  1000
      |||||| ||||||||||| |||||||||||||| ||||||||||||||||
seq2  GTCTGT-GTAGTTCAGAA-GGCCATCTATTAAA-GTCCTGGCCTCACTAT  997

seq1  AAACATAAGCTGTGTATATATAC-ATATGTGAGCATGTTTACACTTCTAT  1049
      |||||| |||||||||||||||| ||||||||||||| ||| ||||||||
seq2  AAACAT-AGCTGTGTATATATACAATATGTGAGCATG-TTAAACTTCTAT  1045

seq1  TTGTATGTAAACATCTTGTAATTAAGTTTATATATAAAAATCTTATAGAC  1099
      |||||||| |||||||||||  ||   ||| |||| |||||||| |||||
seq2  TTGTATGT-AACATCTTGTA--TA--GTTAAATAT-AAAATCTT-TAGAC  1088

seq1  CTATATTTTGCACGTTGATAAGTATATTCATAGACACATTTTTATGTA  1147
      |||||||| ||||||||||||| |||||| |||||||| |||||||||
seq2  CTATATTTGGCACGTTGATAAGGATATTC-TAGACACA-TTTTATGTA  1134

seq1: chr17_43765468_43766317
seq2: B6Ng01-122L23.g_65_913 (reverse)

seq1  TCCGGTTCTGGTCTCAAAATAACCCCATCCAGCTTACTGGCAGAAGAATA  50
      ||||||| |||||||||||| |||||||||| ||||||||||||||||||
seq2  TCCGGTT-TGGTCTCAAAATTACCCCATCCAACTTACTGGCAGAAGAATA  49

seq1  G-AAACTGCACATTCTCTTCGTCAGCTTGCTG-AAGGTGTTCTTGTGCTT  98
      | ||||||||||||||| |||||||||||||| ||||||||| ||||| |
seq2  GAAAACTGCACATTCTC-TCGTCAGCTTGCTGAAAGGTGTTCATGTGC-T  97

seq1  TCTAAGGCGAATCCAGAACTCCGAAGGGCTCTTCACGAACTCCACCTGGG  148
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAAAGGCGAATCCAGAACTCCGGAGGGCTCTTCACGAACTCCACCTGGG  147

seq1  CGTCATAGAAGGTGTTCATCTTCAGCCTGATGGATCTCAAGGAGGGGAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATAGAAGGTGTTCATCTTCAGCCTGATGGATCTCAAGGAGGGGAGG  197

seq1  GAAACTTCCGCCTCCATTTCCTCAGCGGGGGACTGAGACTGAAACGCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCGCCTCCATTTCCTCAGCGGGGGACTGAGACTGAAACGCTGC  247

seq1  CTCCACTTCGTCCTCATCTTCCTCCTCTTCCTCCTCTATCCCCTGGCTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCGTCCTCATCTTCCTCCTCTTCCTCCTCTATCCCCTGGCTCT  297

seq1  GAAGAAACCAGTCAGCCAGGCAACAGGATTGTACTCCGAATGCACTGTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACCAGTCAGCCAGGCAACAGGATTGTACTCCGAATGCACTGTTG  347

seq1  AGATTAATCCCATCTTCCCCATACAGGGTGACATAATACATATGCTCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATCCCATCTTCCCCATACAGGGTGACATAATACATATGCTCAAA  397

seq1  GGAACAGTAAAATTCAATCTTCGCATTCACTGCCTGGCCCAGGATCAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTAAAATTCAATCTTCGCATTCACTGCCTGGCCCAGGATCAGAG  447

seq1  CTTTCAGATCACCTACTTGGGACCGGGACCAGCCTCTCCCGCAGTCCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATCACCTACTTGGGACCGGGACCAGCCTCTCCCGCAGTCCCAG  497

seq1  AGTCCGTACAACGCACAAGGGTAGGTCACCACAGGCATTCGAAAATACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTACAACGCACAAGGGTAGGTCACCACAGGCATTCGAAAATACTC  547

seq1  CGGCAGCAGATAGCGGAGGCTGCTGCAGCTTACTAGTTCTTTCCTTCCGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCAGATAGCGGAGGCTGCTGCAGCTTACTAGTTCTTTCCTTCCGT  597

seq1  AATCGACGTGAAGCACCTGAGCACAGCGCTGAGGCCTGAAGGTCTCAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGACGTGAAGCACCTGAGCACAGCGCTGAGGCCTGAAGGTCTCAAGC  647

seq1  AAGAGAGCCCGGTACCACTGTCCGTCCAAGCCACAGGAAGCACATGGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCCCGGTACCACTGTCCGTCCAAGCCACAGGAAGCACATGGAGA  697

seq1  TCCCGGTTTGTCAGGGCTCTCCTCCCTCTCCTCCCAGGTGGCACTGCCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTTGTCAGGGCTCTCCTCCCTCTCCTCCCAGGTGGCACTGCCAG  747

seq1  AGTCCTCATCATCTGTCCCCACAGGCGCCCGGTATACCTGGGCCATGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCATCATCTGTCCCCACAGGCGCCCGGTATACCTGGGCCATGCTC  797

seq1  TCAGAGAGACGGTGGATCTCCTGCGAGAGGCTCCGCAGTTGACAGTGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGACGGTGGATCTCCTGCGAGAGGCTCCGCAGTTGACAGTGAAT  847

seq1  TC  850
      ||
seq2  TC  849