BAC Information

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BAC

Clone NameB6Ng01-123I22
Chromosome17 (Build37)
Map Location 88,012,462 - 88,187,026
singlet/doubletdoublet
Overlap geneLOC100043727, Tacstd1, Msh2, Kcnk12
Upstream genePrkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2
Downstream geneLOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123I22.bB6Ng01-123I22.g
ACCDH926692DH926693
length1,1471,023
definitionDH926692|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I22, 5' end.DH926693|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,012,462 - 88,013,605)(88,186,002 - 88,187,026)
sequence
gaattccagcctcgggaataaagaaaagaaaaaaaaaaggggcacgtcgg
gatgctacaagcacgtattcctaaacatggcccgctctttgaccatctgg
gaactacaaggcaagagtgcaggctttacaaagaaccgggacaaagtctt
ttgcaagtaagaatttattagcttagcactgcttttttttaagtttccac
tgaccttaaaacagggagatctaaggaactggcgtttggagttagaggga
agaaaatcccagggctgcggtcacacagccacatcagtaaccaagacaaa
gagtaaatgacaaaaaaaaaaaaggagccgcctgcaaaactcaccctggt
tcccagctcggagcccaggaaccgccaggagcaccgcccctcctgccacg
tgatcatcctccagccttcctcccagacaaagaagaggggaggagacttg
ggaacaaagagcgagagctgtagaagcgggtcgtgggctctgggctcctg
tcttcccttttaccttacccaaagaatattaaaaattaacccgagctgca
aaaggagccgaggcacctgatcatctcggcctaacccagaggagagggag
gctctcccagccccctcaaacccaaatatgttcctccttttgagtgttgc
cttctacttctggacagatctgggttacctttcttccctcctccctcctc
cccacccccatcctcgttcagcgtttatgtatttagagaaaaatcccctc
tgacaaatgaacgtcgccaacggaaaaacttgggaaagggcttacttctt
ctgctatttacttctatttagtgttgtttaggaaaatgcaaacaattata
gccactctagaaggtagttgaaaacgggacaggattcagacccccgcccc
aacagcggcagacagtgacgcagagagacagacagaagcagatagagtga
tggatattaacaagtaaggcctgcattcacatggacgccatgccctctaa
ctactgcctcttgacttcccaaaaacgatttcccatcatgtacagaatat
gtgcttggcctacataaattttcattccacaattcattgttggtgttaaa
tcgcttttgtccattttcttttccagattggcttattggagaatgag
gaattcacgtaactaggctggccttgaacttgctacgcagttgaggattg
ttcttctctctgatcagagtggtggcctgagggggaaatgcaggacctct
gggggtgacaaaggtcccaggccactgtgggcacaataagaacagactct
tgggagacaggcttcactgagcaactctttgaattgggagaacaaaggct
gtttaaagcttggaggagtgggtagatgctttcagggtgagtgtgcgaca
ttggggtacgccttatttacatgaagaggaattctaggtatgtgcaggac
atgatcttataacctgttacctggacaccaggctatgtgaccacctcaag
ggttttttgaggagggggtcatgagggggtcataaggctatgagcaccag
aaccatataggcccaggacagggagggaccggtcctactcctgctggctt
caagagattttgggggtttggacatgtctcaacctcagtcttgccctgca
ctggctcccgtggatgcatggctttctagcccctttccagccacacatag
gacgacctgattcttctgcctcgaccttctaagtactgtgattacaggcc
tctatcatcatgcctggcccagaaggttcccttttaaaatgtttttttcc
tgtaagcccacctaactagtgtgctatttattttacttattcactcatgt
gttcttggagacagggtcttaaagcagtctagactagcctttggacttgc
tatgtagccaagggtgacttgaattcatgatcctcctgagttcatcttcc
aagcattggggactgcaggcatatgccaactatgacctgtttgataggtg
ctagagatcgacttctggggctctatgatttaggtatgcacgatgccaac
caagttacatctcaggccccatctagtgtttaacattctgtatagatctg
gcaaaggactaattgactgaacccagtgttttcttgccccagcctccaaa
agcttgttagcagcccccctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88012462_88013605
seq2: B6Ng01-123I22.b_43_1189

seq1  GAATTCCAGCCTCGGGAATAAAGAAAAGAAAAAAAAAAGGGGCACGTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTCGGGAATAAAGAAAAGAAAAAAAAAAGGGGCACGTCGG  50

seq1  GATGCTACAAGCACGTATTCCTAAACATGGCCCGCTCTTTGACCATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACAAGCACGTATTCCTAAACATGGCCCGCTCTTTGACCATCTGG  100

seq1  GAACTACAAGGCAAGAGTGCAGGCTTTACAAAGAACCGGGACAAAGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACAAGGCAAGAGTGCAGGCTTTACAAAGAACCGGGACAAAGTCTT  150

seq1  TTGCAAGTAAGAATTTATTAGCTTAGCACTGCTTTTTTTTAAGTTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTAAGAATTTATTAGCTTAGCACTGCTTTTTTTTAAGTTTCCAC  200

seq1  TGACCTTAAAACAGGGAGATCTAAGGAACTGGCGTTTGGAGTTAGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTAAAACAGGGAGATCTAAGGAACTGGCGTTTGGAGTTAGAGGGA  250

seq1  AGAAAATCCCAGGGCTGCGGTCACACAGCCACATCAGTAACCAAGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCCAGGGCTGCGGTCACACAGCCACATCAGTAACCAAGACAAA  300

seq1  GAGTAAATGACAAAAAAAAAAAAGGAGCCGCCTGCAAAACTCACCCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATGACAAAAAAAAAAAAGGAGCCGCCTGCAAAACTCACCCTGGT  350

seq1  TCCCAGCTCGGAGCCCAGGAACCGCCAGGAGCACCGCCCCTCCTGCCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCGGAGCCCAGGAACCGCCAGGAGCACCGCCCCTCCTGCCACG  400

seq1  TGATCATCCTCCAGCCTTCCTCCCAGACAAAGAAGAGGGGAGGAGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATCCTCCAGCCTTCCTCCCAGACAAAGAAGAGGGGAGGAGACTTG  450

seq1  GGAACAAAGAGCGAGAGCTGTAGAAGCGGGTCGTGGGCTCTGGGCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAGAGCGAGAGCTGTAGAAGCGGGTCGTGGGCTCTGGGCTCCTG  500

seq1  TCTTCCCTTTTACCTTACCCAAAGAATATTAAAAATTAACCCGAGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTTTACCTTACCCAAAGAATATTAAAAATTAACCCGAGCTGCA  550

seq1  AAAGGAGCCGAGGCACCTGATCATCTCGGCCTAACCCAGAGGAGAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCCGAGGCACCTGATCATCTCGGCCTAACCCAGAGGAGAGGGAG  600

seq1  GCTCTCCCAGCCCCCTCAAACCCAAATATGTTCCTCCTTTTGAGTGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCAGCCCCCTCAAACCCAAATATGTTCCTCCTTTTGAGTGTTGC  650

seq1  CTTCTACTTCTGGACAGATCTGGGTTACCTTTCTTCCCTCCTCCCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTTCTGGACAGATCTGGGTTACCTTTCTTCCCTCCTCCCTCCTC  700

seq1  CCCACCCCCATCCTCGTTCAGCGTTTATGTATTTAGAGAAAAATCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCATCCTCGTTCAGCGTTTATGTATTTAGAGAAAAATCCCCTC  750

seq1  TGACAAATGAACGTCGCCAACGGAAAAACTTGGGAAAGGGCTTACTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGAACGTCGCCAACGGAAAAACTTGGGAAAGGGCTTACTTCTT  800

seq1  CTGCTATTTACTTCTATTTAGTGTTGTTTAGGAAAATGCAAACAATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTTACTTCTATTTAGTGTTGTTTAGGAAAATGCAAACAATTATA  850

seq1  GCCACTCTAGAAGGTAGTTGAAAACGGGACAGGGATTCAGGACCCCCGCC  900
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GCCACTCTAGAAGGTAGTTGAAAACGGGACA-GGATTCA-GACCCCCGCC  898

seq1  CCAACAGCGGCAGACAGTGACGCAGAGAGACAGACAGAAGCAGATAGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCGGCAGACAGTGACGCAGAGAGACAGACAGAAGCAGATAGAGT  948

seq1  GAATGGATATTAACAAGTAAGGGCCTGCATTCACATGGACGCCATGCCCT  1000
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  G-ATGGATATTAACAAGTAA-GGCCTGCATTCACATGGACGCCATGCCCT  996

seq1  CTAACTACTGCCTC-TGACTTCACAAATACGATTT-CCATCATGTACAGT  1048
      |||||||||||||| ||||||| |||| ||||||| ||||||||||||| 
seq2  CTAACTACTGCCTCTTGACTTCCCAAAAACGATTTCCCATCATGTACAGA  1046

seq1  ATATGTGGCTGTCTTACATAAATTTCATTTCTACAATTCATTGTT-GTGT  1097
      |||||||  || | |||||||||||   ||| ||||||||||||| ||||
seq2  ATATGTGCTTGGCCTACATAAATTTTCATTCCACAATTCATTGTTGGTGT  1096

seq1  TTAATCTGCTTTGT-CATTTTCTTTT-CAGATTTGCTTA-TGGAG-ATGA  1143
      | ||||   ||||| ||||||||||| |||||| ||||| ||||| ||||
seq2  TAAATCGCTTTTGTCCATTTTCTTTTCCAGATTGGCTTATTGGAGAATGA  1146

seq1  G  1144
      |
seq2  G  1147

seq1: chr17_88186002_88187026
seq2: B6Ng01-123I22.g_70_1092 (reverse)

seq1  GGCAGGGCGGGGCTGCTGAC-AGCTCTGTGGAGGCTGGGGGCAGAGAAAC  49
      ||||||  ||||||||| || |||| | ||||||||||||  ||| ||||
seq2  GGCAGG--GGGGCTGCTAACAAGCT-TTTGGAGGCTGGGGCAAGA-AAAC  46

seq1  ACTGGGCTCAGTCACTTAGTCCTTTGCCAGATCATATACAGAATGTTAAG  99
      |||||| ||||||| |||||||||||||||||| ||||||||||||||| 
seq2  ACTGGGTTCAGTCAATTAGTCCTTTGCCAGATC-TATACAGAATGTTAA-  94

seq1  ACACTAGATGGGGCCTGGAGATGTAACTTGGTTGGCATCGTGCATACCTA  149
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  ACACTAGATGGGGCCT-GAGATGTAACTTGGTTGGCATCGTGCATACCT-  142

seq1  AAATCATAGAGCCCCAG-AGTCGATCTCTAGCACCCTATCAAACAGGTCA  198
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  AAATCATAGAGCCCCAGAAGTCGATCTCTAGCA-CCTATCAAACAGGTCA  191

seq1  TAGTTGGCATATGCCTGCAGT-CCCAATGCTTGGGAGATGAACTCAGGAG  247
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TAGTTGGCATATGCCTGCAGTCCCCAATGCTTGGAAGATGAACTCAGGAG  241

seq1  GATCATGAATTCAAGTCACCCTTGGCTACATAGCAAGTCC-AAGGCTAGT  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCATGAATTCAAGTCACCCTTGGCTACATAGCAAGTCCAAAGGCTAGT  291

seq1  CTAGACTGC-TTAAGACCCTGTCTCCAAGAACACATGAGTGAATAAGT-A  344
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  CTAGACTGCTTTAAGACCCTGTCTCCAAGAACACATGAGTGAATAAGTAA  341

seq1  AATAAATAGCACACTAGTTAGGTGGGCTTACAGGAAAAAAACATTTT-AA  393
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATAAATAGCACACTAGTTAGGTGGGCTTACAGGAAAAAAACATTTTAAA  391

seq1  AGGGAACCTTCTGGGCCAGGCATGATGATAGAGGCCTGTAATCACAGTAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCTTCTGGGCCAGGCATGATGATAGAGGCCTGTAATCACAGTAC  441

seq1  TTAGAAGGTCGAGGCAGAAGAATCAGGTCGTCCTATGTGTGGCTGGAAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTCGAGGCAGAAGAATCAGGTCGTCCTATGTGTGGCTGGAAAG  491

seq1  GGGCTAGAAAGCCATGCATCCACGGGAGCCAGTGCAGGGCAAGACTGAGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGAAAGCCATGCATCCACGGGAGCCAGTGCAGGGCAAGACTGAGG  541

seq1  TTGAGACATGTCCAAACCCCCAAAATCTCTTGAAGCCAGCAGGAGTAGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATGTCCAAACCCCCAAAATCTCTTGAAGCCAGCAGGAGTAGGA  591

seq1  CCGGTCCCTCCCTGTCCTGGGCCTATATGGTTCTGGTGCTCATAGCCTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCCCTCCCTGTCCTGGGCCTATATGGTTCTGGTGCTCATAGCCTTA  641

seq1  TGACCCCCTCATGACCCCCTCCTC-TGCCACCCTTGAGGTGGTCACATAG  692
      ||||||||||||||||||||||||     |||||||||||||||||||||
seq2  TGACCCCCTCATGACCCCCTCCTCAAAAAACCCTTGAGGTGGTCACATAG  691

seq1  CCTGGTGTCCAGGTAACAGGTTATAAGATCATGTCCTGCACATACCTAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTCCAGGTAACAGGTTATAAGATCATGTCCTGCACATACCTAGA  741

seq1  ATTCCTCTTCATGTAAATAAGGCGTACCCCAATGTCGCACACTCACCCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTTCATGTAAATAAGGCGTACCCCAATGTCGCACACTCACCCTG  791

seq1  AAAGCATCTACCCACTCCTCCAAGCTTTAAACAGCCTTTGTTCTCCCAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCTACCCACTCCTCCAAGCTTTAAACAGCCTTTGTTCTCCCAAT  841

seq1  TCAAAGAGTTGCTCAGTGAAGCCTGTCTCCCAAGAGTCTGTTCTTATTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGTTGCTCAGTGAAGCCTGTCTCCCAAGAGTCTGTTCTTATTGT  891

seq1  GCCCACAGTGGCCTGGGACCTTTGTCACCCCCAGAGGTCCTGCATTTCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTGGCCTGGGACCTTTGTCACCCCCAGAGGTCCTGCATTTCCC  941

seq1  CCTCAGGCCACCACTCTGATCAGAGAGAAGAACAATCCTCAACTGCGTAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCCACCACTCTGATCAGAGAGAAGAACAATCCTCAACTGCGTAG  991

seq1  CAAGTTCAAGGCCAGCCTAGTTACGTGGAATTC  1025
      |||||||||||||||||||||||||| ||||||
seq2  CAAGTTCAAGGCCAGCCTAGTTACGT-GAATTC  1023