BAC Information

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BAC

Clone NameB6Ng01-124C18
Chromosome17 (Build37)
Map Location 20,416,251 - 20,417,352
singlet/doubletsinglet
Overlap geneEG224576
Upstream geneLOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743
Downstream geneV2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124C18.bB6Ng01-124C18.g
ACCDH927147DH927148
length1,1731,089
definitionDH927147|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C18, 5' end.DH927148|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatggtggcgtggatgtggaaaaagaggaacactcctccattgttcgtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatagccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtatatctacacaatg
gagtactactcaactattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgttctcactgataagtggatattagcccaaaacc
tagtatacccaagatataagatgcaatttcctaaacacatgaaactcaag
aaaaatgcagactaaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aagaatggaccatgtagagactgccatatccatggatccatcccgtaatc
agcatccaaatgctgacaccattgcatacactagcaagatttatcgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagagtggatgctcacagtcatctaatggatggatcacagggctctcaat
ggagaatctagagaaaatagccaaggagctaaagggactgcaacccttat
aggtgacaacatatgactaccagtaccccggagcttcttgattctagctg
catatgtatcaaagatggcctagtcggcatcactgggaaagagaggccca
atggaacgcaaatttcattgctctagtacaggtacgcccgggtcaaaagg
ggagtgggttgtggtatgtagta
gaattcatacttactgacctctataaaactgtatatatagagagacatgc
atgcactcagggatacagacaaatatataaaataaacttgtggtgcctta
tttctaatgttatcaaattaatgacagatactagctttcctctgcaagtt
ctaagcttgtatgttagcaattccaaagtgccatactgaaaactaatgtc
agagaaatggcagcagtgactccacatgaaatgtattagttaatcttgaa
ttactagttaataaaaatattgtttctaaaatgtgattgactttttaaaa
aatagtaagttttcataactgaagatttcagaacaccaagatcaaaataa
caaaatagctgttattttgggagaaagtgctatcggatatttagactgaa
attatttggtatcatctaataaaaaataaatacaacaggccttgaggaac
taaaattaagagtagtaatgctaaatgaacttgctaaattttgatgtatg
taacaaatctaattccaactattcatggaaaacattttttatatatttta
tggaaataaacatgaactataaagtttactctactcaatatgtggtctat
gtgctattcctcttgtgcattttttgctatttacacagatataattttaa
gaactaccagtatatacttgctctgttatttgccattgaggagatcaatg
ggaaccctaatattttacctaatatatcacttggatttgatttctacaat
gtccgattcactgagaaggacactctcatgaatgcttttattggttcaca
aatagaaggaagaaaagattttgccaaactacaactgtaacaagaaaaat
tttctgctgcactcacaggaacatctggacaacatctgcccaaattagta
ctttatttcaactatcaaatttccacaggggagaaatttgggagtgtgag
aactgggaatcacatatcctcattgatattataggtgtttccacctacag
agggatatttgaattggtaaagcagcaagctggtatcaagaaattgatat
gaaacaaatttccttgcctgccagagaaatgatagtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20416251_20417352
seq2: B6Ng01-124C18.g_66_1154 (reverse)

seq1  TTGACTATCATTTCTCTTGCATGCAAGAGAAATTTGTTTCATATCAATAT  50
      ||||||||||||||||| ||| ||||| |||||||||||||||||||| |
seq2  TTGACTATCATTTCTCTGGCAGGCAAG-GAAATTTGTTTCATATCAATTT  49

seq1  CTCTGAATACATGCTTTGCTGCTTTAACAATTCAAATATCCCTCTTGTAG  100
      || || ||||  || ||||||||||| ||||||||||||||||| |||||
seq2  CT-TG-ATACCAGC-TTGCTGCTTTACCAATTCAAATATCCCTC-TGTAG  95

seq1  TGTGAAAAACACCTATAATATCAATGAGGATATGTGATTCCCAGTTCTCA  150
       |||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTG-GAAACACCTATAATATCAATGAGGATATGTGATTCCCAGTTCTCA  143

seq1  CACTCCCAAATTTTCTCACCTGTGGAAATTTGAATAGTTGAAATAAAGTA  200
      |||||||||| |||||| |||||||||||||| |||||||||||||||||
seq2  CACTCCCAAA-TTTCTCCCCTGTGGAAATTTG-ATAGTTGAAATAAAGTA  191

seq1  CTAATTTGGGCAGATGTTGTCCAAGATGTTCCTGTGAGTGCAGCAGAAAA  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTAATTTGGGCAGATGTTGTCC-AGATGTTCCTGTGAGTGCAGCAGAAAA  240

seq1  TTTTTTCTTGTTACAGTTGTAGTTTGGCAAAATCTTTTTCTTCCTTCTAT  300
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -TTTTTCTTGTTACAGTTGTAGTTTGGCAAAATC-TTTTCTTCCTTCTAT  288

seq1  TTGTGAACCAATTAAAAGCATTCATGAGAGTGTCCTTCTCAGTGAATCGG  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACCAA-TAAAAGCATTCATGAGAGTGTCCTTCTCAGTGAATCGG  337

seq1  ACATTGTAGAAATCAAATCCAAGTGATATATTAGGTAAAATATTAGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAGAAATCAAATCCAAGTGATATATTAGGTAAAATATTAGGGTT  387

seq1  CCCATTGATCTCCTCAATGGCAAATAACAGAGCAAGTATATACTGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGATCTCCTCAATGGCAAATAACAGAGCAAGTATATACTGGTAGT  437

seq1  TCTTAAAATTATATCTGTGTAAATAGCAAAAAATGCACAAGAGGAATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATTATATCTGTGTAAATAGCAAAAAATGCACAAGAGGAATAGC  487

seq1  ACATAGACCACATATTGAGTAGAGTAAACTTTATAGTTCATGTTTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACCACATATTGAGTAGAGTAAACTTTATAGTTCATGTTTATTTC  537

seq1  CATAAAATATATAAAAAATGTTTTCCATGAATAGTTGGAATTAGATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATATATAAAAAATGTTTTCCATGAATAGTTGGAATTAGATTTGT  587

seq1  TACATACATCAAAATTTAGCAAGTTCATTTAGCATTACTACTCTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATCAAAATTTAGCAAGTTCATTTAGCATTACTACTCTTAATTT  637

seq1  TAGTTCCTCAAGGCCTGTTGTATTTATTTTTTATTAGATGATACCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTCAAGGCCTGTTGTATTTATTTTTTATTAGATGATACCAAATA  687

seq1  ATTTCAGTCTAAATATCCGATAGCACTTTCTCCCAAAATAACAGCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTCTAAATATCCGATAGCACTTTCTCCCAAAATAACAGCTATTT  737

seq1  TGTTATTTTGATCTTGGTGTTCTGAAATCTTCAGTTATGAAAACTTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTGATCTTGGTGTTCTGAAATCTTCAGTTATGAAAACTTACTA  787

seq1  TTTTTTAAAAAGTCAATCACATTTTAGAAACAATATTTTTATTAACTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGTCAATCACATTTTAGAAACAATATTTTTATTAACTAGT  837

seq1  AATTCAAGATTAACTAATACATTTCATGTGGAGTCACTGCTGCCATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGATTAACTAATACATTTCATGTGGAGTCACTGCTGCCATTTCT  887

seq1  CTGACATTAGTTTTCAGTATGGCACTTTGGAATTGCTAACATACAAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTAGTTTTCAGTATGGCACTTTGGAATTGCTAACATACAAGCTT  937

seq1  AGAACTTGCAGAGGAAAGCTAGTATCTGTCATTAATTTGATAACATTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGCAGAGGAAAGCTAGTATCTGTCATTAATTTGATAACATTAGA  987

seq1  AATAAGGCACCACAAGTTTATTTTATATATTTGTCTGTATCCCTGAGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCACCACAAGTTTATTTTATATATTTGTCTGTATCCCTGAGTGC  1037

seq1  ATGCATGTCTCTCTATATATACAGTTTTATAGAGGTCAGTAAGTATGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCTCTCTATATATACAGTTTTATAGAGGTCAGTAAGTATGAAT  1087

seq1  TC  1102
      ||
seq2  TC  1089