BAC Information

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BAC

Clone NameB6Ng01-124J20
Chromosome17 (Build37)
Map Location 36,036,265 - 36,172,642
singlet/doubletdoublet
Overlap gene2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23
Upstream geneEhmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik
Downstream geneH2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124J20.bB6Ng01-124J20.g
ACCDH927476DH927477
length1,133615
definitionDH927476|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J20, 5' end.DH927477|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,171,516 - 36,172,642)(36,036,265 - 36,036,878)
sequence
gaattccaggtcagccttgtctacacaatagaaagaaagaaataaacaaa
gaaagaactaaataaagcaataaaataaaagaataacagttcaggacaca
accatgaactttgaacagagaactcatcccaacacagcccagaggcaggc
agaaacaaatgtttctcagggtggccaccaggtggcagtttgctcctggc
tgaaaaggctttagaggtgcccataagctgcacaagcttacaaaaacaaa
gtcaccccgttctgggagtcctttaaggctggagcatgagctctgggcct
caaccactttctgtatattgtctttctgatttctgcagagtgtagttctc
aggatcacatctgagaatgcaacaacagatgcataccctaaaaactgcct
tccagttcatctccaccagccaggagatgaaccaccaccagctgcaaaga
cagtgaggagggaacagaggtcattccagagtttagtcccgcctagttag
tcaacagtgtcctgcagcaggaacctttggcctgtgtgggtgcttgatga
aaaccaaacaaatgactaacagtgtttatctgctaccctatttgcaccat
acacacgcagattctccagtatggagaacaactgaatcttcatagtatag
aagataaaattgctcctatcttcccccattgtccctgtcacacactaccg
ggtcctcaggctgtgatgtagacatccccagggaagtaccttccactttc
tgtgctccaccatgtgtaagagttgcctctaaaccttagacccttcataa
acttgccaccatcagtggttttgattttggttttctctcctggcactgct
gctctgcaaggatccagccatgtgtttcctagttcccctacctggatccg
agggttctccaaggcacctgcttcagagagctgggagagcccttgtagct
ggttaccatggagatgcaaatcaagccaggttctcagggtgcctcccaag
ttccactgggctcacgcccactatgcattcttgctatgggaaccagggcg
catacatttcctgtgggcccttgtttgatctactttgccaagtcccgtga
aacaatcccagttgtggccagggagggtatgtg
gaattcactctgtagaccaggctggccttgaatttagaaatccgcctgcc
tttgcctcccaagtgctgggattaaaggtgtgcgccaccaccaccatcgg
gctccctgtgaggattcttgatcttaggcaggacttgtcttcagagagca
ctgtggggtttgtggtgcagacatgatgaggtcaaagagtaggagaggga
tccagaaacagtcctgaggctagtgagcccaagctcctagcaaatccaca
tcttaccaaggctggccagggaaggaggtatatgttactgggggtagggg
acctatggcttccaagttagtagagaggtctacagttactgcaactctag
aatagaaccagcagtaagtatggggaaaggcagagactcagaaggaggct
ggaggcttttgagctctgctacagatctcagagctgaatctaagagggac
aaagagcactgagaccccaggaagagcatgaagcacaaacgaagctgaaa
ccttaagatgtttttcgctgaaaatgtcaatttagaaaacacagaagaac
ccacactttattgagacaacactgagagggaaaaggaatctggaaggagg
gagggaggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36171516_36172642
seq2: B6Ng01-124J20.b_43_1175 (reverse)

seq1  CACATA-CCTCACTGGCCCAAACT-GGATTGTTT-ACAGGACCTGGGCAA  47
      |||||| |||| ||||||  |||| ||||||||| || ||| || |||||
seq2  CACATACCCTCCCTGGCCACAACTGGGATTGTTTCACGGGA-CTTGGCAA  49

seq1  AGCTGATCAAACAAGGG-CCACAGGAAATGTATGCGGCTCTGG-TCACAC  95
      ||  ||||||||||||| ||||||||||||||||| || |||| || || 
seq2  AGTAGATCAAACAAGGGCCCACAGGAAATGTATGC-GCCCTGGTTCCCAT  98

seq1  TGC-AGGATGCAGTAGTGGGCGTGAGCCACAGTGG-ACTTGGGAGGCA-C  142
       || || ||||| ||||||||||||||| |||||| |||||||||||| |
seq2  AGCAAGAATGCA-TAGTGGGCGTGAGCC-CAGTGGAACTTGGGAGGCACC  146

seq1  CTGAG-ACCTGGC-TGGTTTGCATCTCCATGGTAACCAGCTACAGGGGCT  190
      ||||| ||||||| || ||||||||||||||||||||||||||| |||||
seq2  CTGAGAACCTGGCTTGATTTGCATCTCCATGGTAACCAGCTACAAGGGCT  196

seq1  CTTCCAGCTCTCTGAAGCAGGTGCCTTGGAGAACCCTCGGATCCAGTTAG  240
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCCCAGCTCTCTGAAGCAGGTGCCTTGGAGAACCCTCGGATCCAGGTAG  246

seq1  GGGAACTAGGAAACACATGGCTGGATCCTTGCAGAGCAGCAGTGCCAGGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTAGGAAACACATGGCTGGATCCTTGCAGAGCAGCAGTGCCAGGA  296

seq1  GAGAAAACCAAAATCAAAACCACTGATGGTGGCAAGTTTATGAAGGGTCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACCAAAATCAAAACCACTGATGGTGGCAAGTTTATGAAGGGTCT  346

seq1  AAGGTTTAGAGGCAACTCTTACACATGGTGGAGCACAGAAAGTGGAAGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAGAGGCAACTCTTACACATGGTGGAGCACAGAAAGTGGAAGGT  396

seq1  ACTTCCCTGGGGATGTCTACATCACAGCCTGAGGACCCGGTAGTGTGTGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTGGGGATGTCTACATCACAGCCTGAGGACCCGGTAGTGTGTGA  446

seq1  CAGGGACAATGGGGGAAGATAGGAGCAATTTTATCTTCTATACTATGAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAATGGGGGAAGATAGGAGCAATTTTATCTTCTATACTATGAAG  496

seq1  ATTCAGTTGTTCTCCATACTGGAGAATCTGCGTGTGTATGGTGCAAATAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTGTTCTCCATACTGGAGAATCTGCGTGTGTATGGTGCAAATAG  546

seq1  GGTAGCAGATAAACACTGTTAGTCATTTGTTTGGTTTTCATCAAGCACCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAGATAAACACTGTTAGTCATTTGTTTGGTTTTCATCAAGCACCC  596

seq1  ACACAGGCCAAAGGTTCCTGCTGCAGGACACTGTTGACTAACTAGGCGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCCAAAGGTTCCTGCTGCAGGACACTGTTGACTAACTAGGCGGG  646

seq1  ACTAAACTCTGGAATGACCTCTGTTCCCTCCTCACTGTCTTTGCAGCTGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTCTGGAATGACCTCTGTTCCCTCCTCACTGTCTTTGCAGCTGG  696

seq1  TGGTGGTTCATCTCCTGGCTGGTGGAGATGAACTGGAAGGCAGTTTTTAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTCATCTCCTGGCTGGTGGAGATGAACTGGAAGGCAGTTTTTAG  746

seq1  GGTATGCATCTGTTGTTGCATTCTCAGATGTGATCCTGAGAACTACACTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCATCTGTTGTTGCATTCTCAGATGTGATCCTGAGAACTACACTC  796

seq1  TGCAGAAATCAGAAAGACAATATACAGAAAGTGGTTGAGGCCCAGAGCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATCAGAAAGACAATATACAGAAAGTGGTTGAGGCCCAGAGCTC  846

seq1  ATGCTCCAGCCTTAAAGGACTCCCAGAACGGGGTGACTTTGTTTTTGTAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAGCCTTAAAGGACTCCCAGAACGGGGTGACTTTGTTTTTGTAA  896

seq1  GCTTGTGCAGCTTATGGGCACCTCTAAAGCCTTTTCAGCCAGGAGCAAAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCAGCTTATGGGCACCTCTAAAGCCTTTTCAGCCAGGAGCAAAC  946

seq1  TGCCACCTGGTGGCCACCCTGAGAAACATTTGTTTCTGCCTGCCTCTGGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGGTGGCCACCCTGAGAAACATTTGTTTCTGCCTGCCTCTGGG  996

seq1  CTGTGTTGGGATGAGTTCTCTGTTCAAAGTTCATGGTTGTGTCCTGAACT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGGGATGAGTTCTCTGTTCAAAGTTCATGGTTGTGTCCTGAACT  1046

seq1  GTTATTCTTTTATTTTATTGCTTTATTTAGTTCTTTCTTTGTTTATTTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTTTTATTTTATTGCTTTATTTAGTTCTTTCTTTGTTTATTTCT  1096

seq1  TTCTTTCTATTGTGTAGACAAGGCTGACCTGGAATTC  1127
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTATTGTGTAGACAAGGCTGACCTGGAATTC  1133

seq1: chr17_36036265_36036878
seq2: B6Ng01-124J20.g_66_680

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTTGAATTTAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTTGAATTTAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCACCATCGG  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCACCATCGG  100

seq1  GCTCCCTGTGAGGATTCTTGATCTTAGGCAGGACTTGTCTTCAGAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGTGAGGATTCTTGATCTTAGGCAGGACTTGTCTTCAGAGAGCA  150

seq1  CTGTGGGGTTTGTGGTGCAGACATGATGAGGTCAAAGAGTAGGAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGTTTGTGGTGCAGACATGATGAGGTCAAAGAGTAGGAGAGGGA  200

seq1  TCCAGAAACAGTCCTGAGGCTAGTGAGCCCAAGCTCCTAGCAAATCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACAGTCCTGAGGCTAGTGAGCCCAAGCTCCTAGCAAATCCACA  250

seq1  TCTTACCAAGGCTGGCCAGGGAAGGAGGTATATGTTACTGGGGGTAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAAGGCTGGCCAGGGAAGGAGGTATATGTTACTGGGGGTAGGGG  300

seq1  ACCTATGGCTTCCAAGTTAGTAGAGAGGTCTACAGTTACTGCAACTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGCTTCCAAGTTAGTAGAGAGGTCTACAGTTACTGCAACTCTAG  350

seq1  AATAGAACCAGCAGTAAGTATGGGGAAAGGCAGAGACTCAGAAGGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACCAGCAGTAAGTATGGGGAAAGGCAGAGACTCAGAAGGAGGCT  400

seq1  GGAGGC-TTTGAGCTCTGCTACAGATCTCAGAGCTGAATCTAAGAGGGAC  449
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTTTGAGCTCTGCTACAGATCTCAGAGCTGAATCTAAGAGGGAC  450

seq1  AAAGAGCACTGAGACCCCAGGAAGAGCATGAAGCACAAACGAAGCTGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCACTGAGACCCCAGGAAGAGCATGAAGCACAAACGAAGCTGAAA  500

seq1  CCTTAAGATGTTTTTCGCTGAAAATGTCAATTTAGAAAACACAGAAGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGATGTTTTTCGCTGAAAATGTCAATTTAGAAAACACAGAAGAAC  550

seq1  CCACACTTTATTGAGACAACACTGAGAGGGAAAAGGAATCTGGAAGGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTTATTGAGACAACACTGAGAGGGAAAAGGAATCTGGAAGGAGG  600

seq1  GAGGGAGGAGGGAGG  614
      |||||||||||||||
seq2  GAGGGAGGAGGGAGG  615