BAC Information

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BAC

Clone NameB6Ng01-124L15
Chromosome17 (Build37)
Map Location 11,174,285 - 11,267,748
singlet/doubletdoublet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124L15.bB6Ng01-124L15.g
ACCDH927560DH927561
length1,0761,059
definitionDH927560|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L15, 5' end.DH927561|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,266,678 - 11,267,748)(11,174,285 - 11,175,335)
sequence
gaattctattaccttaatgcatgttatcaataaagggagagcattttgaa
tgagtgttttctgtaaacaaacaacaatggctatatgaagtgcccgttta
gttcctgacattgtactacaagcgtctcaattgaatttggaaaatatgct
caactgtgtgctctgtggtcaagaattatttacttcttatttaggtgaaa
tacttagcaaagcttctgcaagtgaacactaatcgtgggtatttagaccc
gtgagaccacgaagagcctcctaagcacccagcttccctgtgatgctgga
ctgcagcaggctgctctactggattcctgaactactaggtggcttctttt
ctggttcttttacaaagagcaggacgttattaaagctcttttttttttct
ttcctatgcacactggaatttctgagctgacaacttcatcagccccagtt
ctgggataaagggacatccaggaatcagctctgaacttctctgtgggtcg
tggctcagtggggtctttgctcggaggatttttttttttctttcagagcg
ctgctgcatttgcactgtatgtaatatacagacttccctcctagagtgag
aagtcagggtagggtgtgcggggaagagcactgctctgccttctcaggaa
cagatttcttgaccaactgggctttgctgtccatgtctttgttttatttt
atgtcttttcctcctcctccttcctcttcttcttcttccccctccctcct
tttcctagttccttctcttcctagttcctcctcctcctcctcctcctccc
ctcccccttctattttccttttacatttaaaagctcctaacaccaccctt
gatcacctttcttaaagtgcttctttaggaacttgggaatcccatggtgt
tgtaaatgtgcaatttaaatagtatattaggccttgtattcttccccagc
tatgaagaacactctgcttacattttatgttaaactgactttcagttgtt
gagctatacttcccaaagcatcctgaaaggaagcctcaacagaatacttt
tcctccgaggtcaaattgaggttcta
gaattccatgccctgttttcttcagtgagccgttctctttataattagga
ctgagtgatttttaaacagcaatagaagtgtctgaatagctgcgtgttta
tatgaatgtagttattaagaatgcagttattcactttcattctttaatgt
tttgaataaatttcttaaattttatttagtttgttatagtctggaagctg
ggtgtatttttcagaaatctgtttgatcaaaattgagtctttccatttac
tatggtccggacacttaataaaatcttattccaatatgtgtctcttggat
gttgttaaagatggaaataattactaattaaaagcttttataaaagcaca
acaatcactagataactaggggaaatggcaggaaaggtctgaaactgcat
gtgaatgaaattcgccatcacacttggctctgtgtcagatccctccctct
tgttttgaccctaagaggttcgtttgacttgtgtgtgaaataggtaaggt
gatagcagacgccagccaacctccttgggcaacagtcttctagttgctgt
ctgaggtctggggtcattcatgtgctgtgacacttgacatcacaaacata
acacacaggacaatgtttccagtctttagggacattctgaagcatacctc
ccgagtgtccttatttttacatatcatagacttcacattttaacatatac
ttagatatgagtaggaggggcttagaacctgctctctgaaataggacctg
cagtagtgttttagcttcagcaggaacttaaatagtccccaggccagtcc
cttaaggaaagactgacaagggtgggtattatttgtcactccagcaccct
cgtccttcagtccttcccgcccctggaagttctcctgacagctttcaggt
gctgatttccctctggacaagtgggtttcacctcctgttggtttctctgt
gcaagaacatttctttaaaatcttatgggttagaagctgattggttacac
caaggcaaccaaagcagaatccgtcctatagagatttgatctgtagtaaa
tggatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_11266678_11267748
seq2: B6Ng01-124L15.b_48_1123 (reverse)

seq1  TAGAGCCTCAATTTGACCTCGGAGG-AAAGTATTCTG-TGAGGCTTCCTT  48
      |||| |||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TAGAACCTCAATTTGACCTCGGAGGAAAAGTATTCTGTTGAGGCTTCCTT  50

seq1  TCA-GATGCTTTGGGAAGTAATAGCTCAAC-ACTG-AAGTCAGTTTTAAC  95
      ||| ||||||||||||||| |||||||||| |||| ||||||| ||||||
seq2  TCAGGATGCTTTGGGAAGT-ATAGCTCAACAACTGAAAGTCAG-TTTAAC  98

seq1  AATAAAATGTAAGCAG-GTGTGTCTTCATAGCTGGGGAAAGATTACAAGG  144
       ||||||||||||||| |||| ||||||||||||||| |||| |||||||
seq2  -ATAAAATGTAAGCAGAGTGT-TCTTCATAGCTGGGG-AAGAATACAAGG  145

seq1  -CTAATATAACTAATTTAAATTGCAACATTTACAACACCATGGGATTCC-  192
       ||||||| ||| ||||||||||| |||||||||||||||||||||||| 
seq2  CCTAATAT-ACT-ATTTAAATTGC-ACATTTACAACACCATGGGATTCCC  192

seq1  -AGTTCCTAAAGAAGCACTTTAAG-AAGGTGATCAA-GGTGGTGTTAGGA  239
       ||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AAGTTCCTAAAGAAGCACTTTAAGAAAGGTGATCAAGGGTGGTGTTAGGA  242

seq1  GC-TTTAAATGT-AAAGGAAAATAGAAGGGGGAGGGGAGGAGGAGGAGGA  287
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAATGTAAAAGGAAAATAGAAGGGGGAGGGGAGGAGGAGGAGGA  292

seq1  GGAGGAGGAACTAGGAAGAGAAGGAACTAGGAAAAGGAGGGAGGGGGAAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAACTAGGAAGAGAAGGAACTAGGAAAAGGAGGGAGGGGGAAG  342

seq1  AAGAAGAAGAGGAAGGAGGAGGAGGAAAAGACATAAAATAAAACAAAGAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAGGAAGGAGGAGGAGGAAAAGACATAAAATAAAACAAAGAC  392

seq1  ATGGACAGCAAAGCCCAGTTGGTCAAGAAATCTGTTCCTGAGAAGGCAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGCAAAGCCCAGTTGGTCAAGAAATCTGTTCCTGAGAAGGCAGA  442

seq1  GCAGTGCTCTTCCCCGCACACCCTACCCTGACTTCTCACTCTAGGAGGGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCTCTTCCCCGCACACCCTACCCTGACTTCTCACTCTAGGAGGGA  492

seq1  AGTCTGTATATTACATACAGTGCAAATGCAGCAGCGCTCTGAAAGAAAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTATATTACATACAGTGCAAATGCAGCAGCGCTCTGAAAGAAAAA  542

seq1  AAAAAATCCTCCGAGCAAAGACCCCACTGAGCCACGACCCACAGAGAAGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCTCCGAGCAAAGACCCCACTGAGCCACGACCCACAGAGAAGT  592

seq1  TCAGAGCTGATTCCTGGATGTCCCTTTATCCCAGAACTGGGGCTGATGAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTGATTCCTGGATGTCCCTTTATCCCAGAACTGGGGCTGATGAA  642

seq1  GTTGTCAGCTCAGAAATTCCAGTGTGCATAGGAAAGAAAAAAAAAAGAGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGCTCAGAAATTCCAGTGTGCATAGGAAAGAAAAAAAAAAGAGC  692

seq1  TTTAATAACGTCCTGCTCTTTGTAAAAGAACCAGAAAAGAAGCCACCTAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAACGTCCTGCTCTTTGTAAAAGAACCAGAAAAGAAGCCACCTAG  742

seq1  TAGTTCAGGAATCCAGTAGAGCAGCCTGCTGCAGTCCAGCATCACAGGGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGGAATCCAGTAGAGCAGCCTGCTGCAGTCCAGCATCACAGGGA  792

seq1  AGCTGGGTGCTTAGGAGGCTCTTCGTGGTCTCACGGGTCTAAATACCCAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTGCTTAGGAGGCTCTTCGTGGTCTCACGGGTCTAAATACCCAC  842

seq1  GATTAGTGTTCACTTGCAGAAGCTTTGCTAAGTATTTCACCTAAATAAGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTGTTCACTTGCAGAAGCTTTGCTAAGTATTTCACCTAAATAAGA  892

seq1  AGTAAATAATTCTTGACCACAGAGCACACAGTTGAGCATATTTTCCAAAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAATTCTTGACCACAGAGCACACAGTTGAGCATATTTTCCAAAT  942

seq1  TCAATTGAGACGCTTGTAGTACAATGTCAGGAACTAAACGGGCACTTCAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGAGACGCTTGTAGTACAATGTCAGGAACTAAACGGGCACTTCAT  992

seq1  ATAGCCATTGTTGTTTGTTTACAGAAAACACTCATTCAAAATGCTCTCCC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATTGTTGTTTGTTTACAGAAAACACTCATTCAAAATGCTCTCCC  1042

seq1  TTTATTGATAACATGCATTAAGGTAATAGAATTC  1071
      ||||||||||||||||||||||||||||||||||
seq2  TTTATTGATAACATGCATTAAGGTAATAGAATTC  1076

seq1: chr17_11174285_11175335
seq2: B6Ng01-124L15.g_71_1129

seq1  GAATTCCATGCCCTGTTTTCTTCAGTGAGCCGTTCTCTTTATAATTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCCTGTTTTCTTCAGTGAGCCGTTCTCTTTATAATTAGGA  50

seq1  CTGAGTGATTTTTAAACAGCAATAGAAGTGTCTGAATAGCTGCGTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGATTTTTAAACAGCAATAGAAGTGTCTGAATAGCTGCGTGTTTA  100

seq1  TATGAATGTAGTTATTAAGAATGCAGTTATTCACTTTCATTCTTTAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTAGTTATTAAGAATGCAGTTATTCACTTTCATTCTTTAATGT  150

seq1  TTTGAATAAATTTCTTAAATTTTATTTAGTTTGTTATAGTCTGGAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAAATTTCTTAAATTTTATTTAGTTTGTTATAGTCTGGAAGCTG  200

seq1  GGTGTATTTTTCAGAAATCTGTTTGATCAAAATTGAGTCTTTCCATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTTTTCAGAAATCTGTTTGATCAAAATTGAGTCTTTCCATTTAC  250

seq1  TATGGTCCGGACACTTAATAAAATCTTATTCCAATATGTGTCTCTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCCGGACACTTAATAAAATCTTATTCCAATATGTGTCTCTTGGAT  300

seq1  GTTGTTAAAGATGGAAATAATTACTAATTAAAAGCTTTTATAAAAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAAGATGGAAATAATTACTAATTAAAAGCTTTTATAAAAGCACA  350

seq1  ACAATCACTAGATAACTAGGGGAAATGGCAGGAAAGGTCTGAAACTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACTAGATAACTAGGGGAAATGGCAGGAAAGGTCTGAAACTGCAT  400

seq1  GTGAATGAAATTCGCCATCACACTTGGCTCTGTGTCAGATCCCTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAAATTCGCCATCACACTTGGCTCTGTGTCAGATCCCTCCCTCT  450

seq1  TGTTTTGACCCTAAGAGGTTCGTTTGACTTGTGTGTG-AATAGGTAAGGT  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTTGACCCTAAGAGGTTCGTTTGACTTGTGTGTGAAATAGGTAAGGT  500

seq1  GATAGCAGACGCCAGCCAACCTCCTT-GGCAACAGTCTTCTAGTTGCTGT  548
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATAGCAGACGCCAGCCAACCTCCTTGGGCAACAGTCTTCTAGTTGCTGT  550

seq1  CTGAGGTCTGGGGTCATTCATGTGCTGTGACACTTGACATCAC-AACATA  597
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAGGTCTGGGGTCATTCATGTGCTGTGACACTTGACATCACAAACATA  600

seq1  ACACACAGGACAATGTTTCCAGTCTTTAGGGACATTCTGAAGCATACCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGACAATGTTTCCAGTCTTTAGGGACATTCTGAAGCATACCTC  650

seq1  CGAAGTGTCCTTATTTTTACATATCATAGACTTCACA-TTTAACATATAC  696
      |  |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCGAGTGTCCTTATTTTTACATATCATAGACTTCACATTTTAACATATAC  700

seq1  TTAGATATGAGTAGGAGGGGCTTAGAACCTGCTCTCTGAAATAGGACCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATGAGTAGGAGGGGCTTAGAACCTGCTCTCTGAAATAGGACCTG  750

seq1  CAGTAGTG-TTTAGCTTCAGCAGGGAACTTAAATAGTCCCCAGGGCAGT-  794
      |||||||| ||||||||||||| ||||||||||||||||||||| |||| 
seq2  CAGTAGTGTTTTAGCTTCAGCA-GGAACTTAAATAGTCCCCAGGCCAGTC  799

seq1  CCTTAAGGAAAGACTGACAAGGGT-GGTATTA-TTGTCACTCCAGCA-CC  841
      |||||||||||||||||||||||| ||||||| |||||||||||||| ||
seq2  CCTTAAGGAAAGACTGACAAGGGTGGGTATTATTTGTCACTCCAGCACCC  849

seq1  TCGTCCTTCAGTCCTCCCCGCCCCCTGGAGTTCTCCTGACAGCTTTCA-G  890
      ||||||||||||||| ||||||||  | |||||||||||||||||||| |
seq2  TCGTCCTTCAGTCCTTCCCGCCCCTGGAAGTTCTCCTGACAGCTTTCAGG  899

seq1  TGCTGATTTCCCTTCTGGACAAGTTGGGTTTCACTTCCTGTTTGTTTCTC  940
      |||||||||||| |||||||||| |||||||||| ||||||| |||||||
seq2  TGCTGATTTCCC-TCTGGACAAG-TGGGTTTCACCTCCTGTTGGTTTCTC  947

seq1  TGTTGCAAGAACATTTCTTTATAAATCCTATGGGTTAGAGCCTGATT-GT  989
      || |||||||||||||||||| ||||| |||||||||||  |||||| ||
seq2  TG-TGCAAGAACATTTCTTTA-AAATCTTATGGGTTAGAAGCTGATTGGT  995

seq1  TACA-CAAGCCAACCAAAGCAG-ATTCGTCCTACATAAAGA-TTGATCT-  1035
      |||| |||| |||||||||||| || ||||||  ||| ||| ||||||| 
seq2  TACACCAAGGCAACCAAAGCAGAATCCGTCCT--ATAGAGATTTGATCTG  1043

seq1  TAGTATAATGATACAT  1051
      ||||| |  |||||||
seq2  TAGTAAATGGATACAT  1059