BAC Information

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BAC

Clone NameB6Ng01-125H22
Chromosome17 (Build37)
Map Location 58,503,478 - 58,504,566
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H22.bB6Ng01-125H22.g
ACCDH928116DH928117
length7551,103
definitionDH928116|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H22, 5' end.DH928117|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagccctgtaccccattttaatagggttatttggttct
ctggagtctaacttcttgatttctttgaatatattgcatattagccctct
atcttatgtagggttggtaaaagatcttttcccaatctgttggttgccat
tttgtcctattgacagtgttctttgccttacagaagctttgcaatttaat
gaggtcccatttgtcaattcttgatcttagagcataagacattagtgttc
tgttcaggaacttttccactgtgacaatgtatttgaggttttccccgact
ttctcttctactagtttcagcatattgggttttatgtggaagtccttgat
ccacttggacttgaactttgtacagaagataagaatggatcaaattgcat
tcttctacatgttgacaaccagttgaatcagaactatttgttgaaaatga
tgtcctttttccattagatggatttagctcctctgtcaaaggtcaaatga
ccataggtgtgtggattcatttctgagtcttcaattctattccattgacc
aacctacttgtttttttttccattttttattaggtatttagctcatttac
atttccaatgctataccaaaaagtcccccatatccacccacccccactcc
cctgcccacccactcccccttttttggccctggtgttcccctgtactggg
gcatataaagtttgcaagtccaatgggcctctctttccagtgatggcccg
actag

gaattccagtgaggagcctgccctgtgtgagactgtaagctttttaccca
tgtgattgccttaggctttctcaaaacctggcctgtggatttgttttatt
ttcctacagatggaccagcaactcttcagctatactttctcactagaatc
tgagttccagagagcaaggtcgctcgtcctaggcaaagtcacaggtttgt
ttttgcattctatacttctcactggatgttgttaaactcaataaaattgt
ctcttctgtttgtgtgttcagtgattcacacaggaagacattgcttctat
ctgttctcttgatacaggttttgaaatgagatatgctaagaaagaaatgt
gctaatggtgcaggatgccatccatgtctgttttgttgactggttagttc
atttcttgtaattattaagtttgtaaattgttagtaacccaggtagaagt
gtgatcaagtaataaggcaagttaacatattttaatttaaattatataat
tatttttcttttagatagtcaactttttatttgcgttcccttagctttaa
actaaaggaatgaagtaggaagctggactgcagaatgaggattcaaaact
cacgctggacgcatggattctcctcttgttttcacatcagctttggtgaa
ttttcacttgttgtttcagaatatttattgcctgtacaacactaaacttc
ttttgctttcctgaataattggctattgaatgatatttgatctttatcaa
tgccttttagagcttgaatgtgatgtggctacaactaatgtagacaacag
gcctttgttttgggccacagtttatgccctagctttcctcattttttttc
cttttaataattttctctttataaagccttatatatgatgttgaatagaa
tacacagttgagttgtatgttaagtattgttcatggtgtacatggtgtgg
tgtatgtaccacattcacacattatggaccatggacattgtctatggtat
tggtatgcttttgggagatccaacaacattctgcttgttggtgttcctac
cttgtttaaggcagggattctctgtttcgtggcatgtaccggatggctta
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58503478_58504566
seq2: B6Ng01-125H22.g_65_1167

seq1  GAATTCCAGTGAGGAGCCTGCCCTGTGTGAGACTGTAAGCTTTTTACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAGGAGCCTGCCCTGTGTGAGACTGTAAGCTTTTTACCCA  50

seq1  TGTGATTGCCTTAGGCTTTCTCAAAACCTGGCCTGTGGATTTGTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGCCTTAGGCTTTCTCAAAACCTGGCCTGTGGATTTGTTTTATT  100

seq1  TTCCTACAGATGGACCAGCAACTCTTCAGCTATACTTTCTCACTAGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGATGGACCAGCAACTCTTCAGCTATACTTTCTCACTAGAATC  150

seq1  TGAGTTCCAGAGAGCAAGGTCGCTCGTCCTAGGCAAAGTCACAGGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGAGAGCAAGGTCGCTCGTCCTAGGCAAAGTCACAGGTTTGT  200

seq1  TTTTGCATTCTATACTTCTCACTGGATGTTGTTAAACTCAATAAAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTCTATACTTCTCACTGGATGTTGTTAAACTCAATAAAATTGT  250

seq1  CTCTTCTGTTTGTGTGTTCAGTGATTCACACAGGAAGACATTGCTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTTTGTGTGTTCAGTGATTCACACAGGAAGACATTGCTTCTAT  300

seq1  CTGTTCTCTTGATACAGGTTTTGAAATGAGATATGCTAAGAAAGAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTTGATACAGGTTTTGAAATGAGATATGCTAAGAAAGAAATGT  350

seq1  GCTAATGGTGCAGGATGCCATCCATGTCTGTTTTGTTGACTGGTTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGTGCAGGATGCCATCCATGTCTGTTTTGTTGACTGGTTAGTTC  400

seq1  ATTTCTTGTAATTATTAAGTTTGTAAATTGTTAGTAACCCAGGTAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTAATTATTAAGTTTGTAAATTGTTAGTAACCCAGGTAGAAGT  450

seq1  GTGATCAAGTAATAAGGCAAGTTAACATATTTTAATTTAAATTATATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAAGTAATAAGGCAAGTTAACATATTTTAATTTAAATTATATAAT  500

seq1  TATTTTTCTTTTAGATAGTCAACTTTTTATTTGCGTTCCCTTAGCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTTTAGATAGTCAACTTTTTATTTGCGTTCCCTTAGCTTTAA  550

seq1  ACTAAAGGAATGAAGTAGGAAGCTGGACTGCAGAATGAGGATTCAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGAATGAAGTAGGAAGCTGGACTGCAGAATGAGGATTCAAAACT  600

seq1  CACGCTGGACGCATGGATTCTCCTCTTGTTTTCACATCAGCTTT-GTGAA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACGCTGGACGCATGGATTCTCCTCTTGTTTTCACATCAGCTTTGGTGAA  650

seq1  TTTTCACTTGTTGTTTCAGAATATTTATTGCCTGTACAACACTAAACTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTGTTGTTTCAGAATATTTATTGCCTGTACAACACTAAACTTC  700

seq1  TTTTGCTTTCCTGAATAATTGGCTATTGAATGATATTTGATCTTTATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCCTGAATAATTGGCTATTGAATGATATTTGATCTTTATCAA  750

seq1  TGCCTTTTAGAGCTTGAATGTGATGTGGCTACAACTAATGTAGACAACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTAGAGCTTGAATGTGATGTGGCTACAACTAATGTAGACAACAG  800

seq1  GCCTTTGTTTT-GGCCACAGTTTATGCCCTAGCTTTCCTCATTTTTTTTC  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTTTTGGGCCACAGTTTATGCCCTAGCTTTCCTCATTTTTTTTC  850

seq1  CTTTTAATAATTTTCTCTTTATAAAGCCTTATATATGATGTTGAATAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATAATTTTCTCTTTATAAAGCCTTATATATGATGTTGAATAGAA  900

seq1  TACACAGTTGAGTTGTATGTTAAGTATTGTTCAT-GTGTACAT-GTGTGG  946
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TACACAGTTGAGTTGTATGTTAAGTATTGTTCATGGTGTACATGGTGTGG  950

seq1  TGTATGTA-CACATTCACACA-TAT-GACCATGGACA-TGTCTATGGTA-  991
      |||||||| |||||||||||| ||| ||||||||||| ||||||||||| 
seq2  TGTATGTACCACATTCACACATTATGGACCATGGACATTGTCTATGGTAT  1000

seq1  TGGTATGCTTT--GGAGAT-CAACAACA-TCTGC-TGTTGGTTGTTCTAA  1036
      |||||||||||  |||||| |||||||| ||||| |||||||  | ||| 
seq2  TGGTATGCTTTTGGGAGATCCAACAACATTCTGCTTGTTGGTGTTCCTAC  1050

seq1  CTTGTTTTAGGCA-GGATCTCCTGTTCTGTGCATTGTACACGAGTGGCTT  1085
      ||||||| ||||| ||||   |||||  |||   ||||| ||  ||||||
seq2  CTTGTTTAAGGCAGGGATTCTCTGTTTCGTGGCATGTAC-CGGATGGCTT  1099

seq1  ATGG  1089
      ||||
seq2  ATGG  1103


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