BAC Information

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BAC

Clone NameB6Ng01-125I14
Chromosome17 (Build37)9 (Build37)
Map Location 46,108,729 - 46,108,91262,272,995 - 62,273,130
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125I14.bB6Ng01-125I14.g
ACCDH928146DH928147
length195136
definitionDH928146|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I14, 5' end.DH928147|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,108,729 - 46,108,912)(62,272,995 - 62,273,130)
sequence
tatctctgtgtttgtctgcaaaagtctttatttggtttgtgtttggagga
cattccactgaataaagagttctaatttgacttttttcctattttaaagt
tgtcttttattcattcctaatggacatggctgtgacagaggtctatggat
ttgtgtgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
atacacagatggacttatacaaccagttgggcttccagctgcatcaggcc
acgggtctgacacacagtaggcatcctataactaccagttgagctgagct
gtgttggcatgtgggcctggggtgggggtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46108729_46108912
seq2: B6Ng01-125I14.b_180_246 (reverse)

seq1  CACACACACACAAACACATACATAGGCACACACCTATACATGCGCACACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACAGACATGCATGTATACACACATACATATACACACATACACAGGCACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACCTATACATGCACACATACACACACACACACACACACACACGCACGCG  150
                    |||| |||||||||||||||||||||||| ||| ||
seq2  --------------CACACACACACACACACACACACACACACACACACG  36

seq1  TGCACACACACACATTCCAGGGATCTGTCACAGC  184
      |||||||| |  |||   ||   |||||||||||
seq2  TGCACACAAATCCAT---AGACCTCTGTCACAGC  67

seq1: chr9_62272995_62273130
seq2: B6Ng01-125I14.g_72_207

seq1  ATACACAGATGGACTTATACAACCAGTTGGGCTTCCAGCTGCATCAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGATGGACTTATACAACCAGTTGGGCTTCCAGCTGCATCAGGCC  50

seq1  ACGGGTCTGACACACAGTAGGCATCCTATAACTACCAGTTGAGCTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTCTGACACACAGTAGGCATCCTATAACTACCAGTTGAGCTGAGCT  100

seq1  GTGTTGGCATGTGGGCCTGGGGTGGGGGTGGGGGTG  136
      ||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCATGTGGGCCTGGGGTGGGGGTGGGGGTG  136