BAC Information

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BAC

Clone NameB6Ng01-125P11
Chromosome17 (Build37)
Map Location 15,198,537 - 15,338,724
singlet/doubletdoublet
Overlap gene9030025P20Rik
Upstream gene4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, Tcte3
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P11.bB6Ng01-125P11.g
ACCDH928456DH928457
length276368
definitionDH928456|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P11, 5' end.DH928457|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,198,537 - 15,198,812)(15,338,351 - 15,338,724)
sequence
tactttccagctacatcagatctagggaatctgaaagtaatcttttaacc
ccacatgcagagatcccagtgctcatgacaccccttagacaggctgtaca
aatggtatgctgtgctcagtcgactatagcgctgtgatgtagccttcatc
tatgtccacaagtttttcgtatattagctgcctgtatgtagtacttgcca
agggataggagtccttacatattgtagcatcttatggattgaaatacggt
gtgtatgagaggggtgtgtgtgtgtg
agctgtgcttgtggtacagagctccttagggacaagaggatgctgctgtc
aggactttaggaagtatggagaggatcattaggagggtccacataacggg
ctggtccttcaggaatacatggggtgcctgcccttggtctaatttcttca
caggcccagcatctttgctactagcctagctgagcaggtgctacaggaca
ctctcacagtctgcttctgctgagtacctgcttggcttcctggttctctc
ctcaggtagaaggatggaagccgtcacattgataaactgtgacttggctc
tctctgggtttgtatctcccaatggcaaattaactgagctcagcatattt
tctatgatttgacctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15198537_15198812
seq2: B6Ng01-125P11.b_54_329

seq1  TACTTTCCAGCTACATCAGATCTAGGGAATCTGAAAGTAATCTTTTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCAGCTACATCAGATCTAGGGAATCTGAAAGTAATCTTTTAACC  50

seq1  CCACATGCAGAGATCCCAGTGCTCATGACACCCCTTAGACAGGCTGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCAGAGATCCCAGTGCTCATGACACCCCTTAGACAGGCTGTACA  100

seq1  AATGGTATGCTGTGCTCAGTCGACTATAGCGCTGTGATGTAGCCTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATGCTGTGCTCAGTCGACTATAGCGCTGTGATGTAGCCTTCATC  150

seq1  TATGTCCACAAGTTTTTCGTATATTAGCTGCCTGTATGTAGTACTTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCACAAGTTTTTCGTATATTAGCTGCCTGTATGTAGTACTTGCCA  200

seq1  AGGGATAGGAGTCCTTACATATTGTAGCATCTTATGGATTGAAATACGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGGAGTCCTTACATATTGTAGCATCTTATGGATTGAAATACGGT  250

seq1  GTGTATGAGAGGGGTGTGTGTGTGTG  276
      ||||||||||||||||||||||||||
seq2  GTGTATGAGAGGGGTGTGTGTGTGTG  276

seq1: chr17_15338351_15338724
seq2: B6Ng01-125P11.g_68_441 (reverse)

seq1  CCTAGGTCAGATCATAGAAACTATGCTGAGCTCAGCTAATTTGCCATTGG  50
      ||||||||| |||||||||| |||||||||||||| ||||||||||||||
seq2  CCTAGGTCAAATCATAGAAAATATGCTGAGCTCAGTTAATTTGCCATTGG  50

seq1  GAGATACAAACCCAGAGAGAGCCAAGTCACAGTTTATCAATGTGACGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAAACCCAGAGAGAGCCAAGTCACAGTTTATCAATGTGACGGCT  100

seq1  TCCATCCTTCTACCTGAGGAGAGAACCAGGAAGCCAAGCAGGTACTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTTCTACCTGAGGAGAGAACCAGGAAGCCAAGCAGGTACTCAGC  150

seq1  AGAAGCAGACTGTGAGAGTGTCCTGTAGCACCTGCTCAGCTAGGCTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGACTGTGAGAGTGTCCTGTAGCACCTGCTCAGCTAGGCTAGTA  200

seq1  GCAAAGATGCTGGGCCTGTGAAGAAATTAGACCAAGGGCAGGCACCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATGCTGGGCCTGTGAAGAAATTAGACCAAGGGCAGGCACCCCAT  250

seq1  GTATTCCTGAAGGACCAGCCCGTTATGTGGACCCTCCTAATGATCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTGAAGGACCAGCCCGTTATGTGGACCCTCCTAATGATCCTCTC  300

seq1  CATACTTCCTAAAGTCCTGACAGCAGCATCCTCTTGTCCCTAAGGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTCCTAAAGTCCTGACAGCAGCATCCTCTTGTCCCTAAGGAGCTC  350

seq1  TGTACCACAAGCACAGCTGAATTC  374
      ||||||||||||||||||||||||
seq2  TGTACCACAAGCACAGCTGAATTC  374