BAC Information

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BAC

Clone NameB6Ng01-127A04
Chromosome17 (Build37)3 (Build37)
Map Location 39,521,621 - 39,522,243153,062,397 - 153,062,915
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127A04.bB6Ng01-127A04.g
ACCDH929238DH929239
length895798
definitionDH929238|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A04, 5' end.DH929239|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,521,621 - 39,522,243)(153,062,397 - 153,062,915)
sequence
gaattccaaataattaaacactgagtaacttgttagtgatggaccatggt
tatccttggattgcattgtgactctgccataggcgaaagattttgaactt
ttaaaagatacttttgatttctaaaatgaatgtatttattttattttaat
gtgttttattttatttactttgcaaccaaatcgtagttttgcctcaccca
catctccatctagttcaacccaatctcttcttccaccaacattgctccta
catttcttttcagaatagaccactataggtttctgtcaaccagtcacagt
atataaacttgaagcatgattatgttcctcctctccttttaagtctagag
atggtaaaaaaaaaaaaaactgtggaaagataccaaataatgaaagagaa
tcacagatagccgctgctcccttgtagaagtcacacaacatcatcattct
acacaacttttacatatttgcacgggatctaggtcagacaaatacatgtt
gtctgataatttaatctttctgagttctaatcaacaaagggtattagatt
ctatgggctgtttcttgtggtttccttgacctatttgggtgttacaatat
cttctccctggattttgcagattctacaaactctgacaaatattttgtgg
tcagcatctgcttagggtctctgaaactcttttcaacattttctgggtta
agtatctctcatgtcaatttgctaaggcactaaacagaatataactgtat
agcagaacaactagaatgatttcattattcctattccttttgagccattg
atgtttggttctataataagtctctggtttatccaacttctgtctgtggt
ctcaccaggcagtgtcatgggtaggctccaactcatggcatgtgt
gaattccggacaaaactaaaaaatggcaggaaactgcaggtaggacctgt
tcttgaagccatataggagtgctccttacttgattatttcacctgactgc
ctccatcagattgtttaaaagagaattcaagaacaccagtctagggatgg
aaacacccacagtaggcttggactattcccattagttaataattaagatt
atttacagacagatactttgagatcattttccatatttgagaaaaagttg
tatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcttcctctctgt
cctgcttttccctccagttacatcgctttgaagttcctttaccactgttt
gaacacagtgctcatcacagccttacctctgctggtgtgtaatttctctg
ttgcttgaattagccacacgaggtggttatcttggatgcatgcccgtgat
ttaagataatgaataacacttcattgtctgattcatccaaccagatgggt
agcccatcattatgacaacacattcaggcattgttttccattcaccatgt
ctccccccatgcagaaggtaaaggaaggaagcacaatcagtgaatgccat
ttttaaaggttgaaactctgagacgccagcacaaacatgggcagcctttt
ctagaaacaacgagactgtgtgaagtaaagaactgcttaaaatttaggga
ctggggcaaatctgttttaagtattcaatactagaatttgaaaaatgttt
tcattaaaagagaaactactggatacttcatgcaaggcatggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39521621_39522243
seq2: B6Ng01-127A04.b_44_645 (reverse)

seq1  AGATATTGTAACACCCAGAGAGGTCAAGGAAACCACAAGAAACAGCCCAT  50
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  AGATATTGTAACACCCAAATAGGTCAAGGAAACCACAAGAAACAGCCCAT  50

seq1  AGAATCTAATATCCTTTGTTGATTAGAACTCAGAAAGATTAAATTATCAG  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTAATACCCTTTGTTGATTAGAACTCAGAAAGATTAAATTATCAG  100

seq1  ACAACATGCATTTGTCTGACCTAGATCCAGTACAAATATGTAAAAGTTGT  150
      |||||||| ||||||||||||||||||| || ||||||||||||||||||
seq2  ACAACATGTATTTGTCTGACCTAGATCCCGTGCAAATATGTAAAAGTTGT  150

seq1  GCATAATGATGATGTTGTGTGACTTCTATAAGGGAGCAGCGGCTATCTGT  200
      | | |||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTAGAATGATGATGTTGTGTGACTTCTACAAGGGAGCAGCGGCTATCTGT  200

seq1  GATTCTCTTACATTATTTGGTATCTTTCCACAG----ATTTTTTTTTAAC  246
      ||||||||| |||||||||||||||||||||||     |||||||||| |
seq2  GATTCTCTTTCATTATTTGGTATCTTTCCACAGTTTTTTTTTTTTTTACC  250

seq1  ATCTCTAGATTTAAATGGAGAGGAGGAACATAATCGGACTTCAAGTTTAT  296
      ||||||||| ||||| |||||||||||||||||||   ||||||||||||
seq2  ATCTCTAGACTTAAAAGGAGAGGAGGAACATAATCATGCTTCAAGTTTAT  300

seq1  ATACTATGACTGGTTGACACAAACCTATAGTAATCTATTCTGAAAAGAAA  346
      ||||| ||||||||||||| |||||||||||  |||||||||||||||||
seq2  ATACTGTGACTGGTTGACAGAAACCTATAGTGGTCTATTCTGAAAAGAAA  350

seq1  TGTAGGAGCAATATTGATGGAAGGCGAAATAGGGTTGAATTAGATGGAGA  396
      |||||||||||| ||| ||||||  || || |||||||| ||||||||||
seq2  TGTAGGAGCAATGTTGGTGGAAGAAGAGATTGGGTTGAACTAGATGGAGA  400

seq1  TGTGGGTGAGGCAAAACTATGATTTGGTTGCAAAGTAAATAAAATAAAAT  446
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TGTGGGTGAGGCAAAACTACGATTTGGTTGCAAAGTAAATAAAATAAAAC  450

seq1  AAAATAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAATACATTC  496
      | |                          |||||||||||||||||||||
seq2  ACA-------------------------TTAAAATAAAATAAATACATTC  475

seq1  ATTTTAGAAATCAAAAGTATCTTTTAAAAGTTCAAAATTTTTCGCCTATG  546
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTTTAGAAATCAAAAGTATCTTTTAAAAGTTCAAAATCTTTCGCCTATG  525

seq1  GCAGAGTGACAATGCAATCCAAGGAAAACCATGGTCCATCACTAACATGT  596
      ||||||| ||||||||||||||||| ||||||||||||||||||||| ||
seq2  GCAGAGTCACAATGCAATCCAAGGATAACCATGGTCCATCACTAACAAGT  575

seq1  TACTCAGTGTTTAATTATTTGGAATTC  623
      |||||||||||||||||||||||||||
seq2  TACTCAGTGTTTAATTATTTGGAATTC  602

seq1: chr3_153062397_153062915
seq2: B6Ng01-127A04.g_352_863 (reverse)

seq1  CACCCAACCATGCCTTTGCATGAAGTATCCAGTAGTTTCTCTTTTTAATG  50
      ||||| |||||||| |||||||||||||||||||||||||| ||||||||
seq2  CACCC-ACCATGCC-TTGCATGAAGTATCCAGTAGTTTCTC-TTTTAATG  47

seq1  AAAAACATTTTTCAAATTCTACGTATTGAATACTTAATATACAGATTTGC  100
       |||||||||||||||||||| ||||||||||||||  | ||||||||||
seq2  -AAAACATTTTTCAAATTCTA-GTATTGAATACTTA--AAACAGATTTGC  93

seq1  CCCAGTCCCTAAATTTTAAGCAGTTCTTTACTTCACACAGTCTCGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCCTAAATTTTAAGCAGTTCTTTACTTCACACAGTCTCGTTGTT  143

seq1  TCTAGAAAAGGCTGCCCATGTTTGTGCTGGCGTCTCAGAGTTTCAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGGCTGCCCATGTTTGTGCTGGCGTCTCAGAGTTTCAACCTT  193

seq1  TAAAAATGGCATTCACTGATTGTGCTTCCTTCCTTTACCTTCTGCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGCATTCACTGATTGTGCTTCCTTCCTTTACCTTCTGCATGGG  243

seq1  GGGAGACATGGTGAATGGAAAACAATGCCTGAATGTGTTGTCATAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATGGTGAATGGAAAACAATGCCTGAATGTGTTGTCATAATGAT  293

seq1  GGGCTACCCATCTGGTTGGATGAATCAGACAATGAAGTGTTATTCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACCCATCTGGTTGGATGAATCAGACAATGAAGTGTTATTCATTAT  343

seq1  CTTAAATCACGGGCATGCATCCAAGATAACCACCTCGTGTGGCTAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCACGGGCATGCATCCAAGATAACCACCTCGTGTGGCTAATTCA  393

seq1  AGCAACAGAGAAATTACACACCAGCAGAGGTAAGGCTGTGATGAGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGAGAAATTACACACCAGCAGAGGTAAGGCTGTGATGAGCACTG  443

seq1  TGTTCAAACAGTGGTAAAGGAACTTCAAAGCGATGTAACTGGAGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAACAGTGGTAAAGGAACTTCAAAGCGATGTAACTGGAGGGAAAA  493

seq1  GCAGGACAGAGAGGAAGCA  519
      |||||||||||||||||||
seq2  GCAGGACAGAGAGGAAGCA  512