BAC Information

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BAC

Clone NameB6Ng01-130D17
Chromosome17 (Build37)
Map Location 41,037,588 - 41,038,714
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik
Downstream geneEG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130D17.bB6Ng01-130D17.g
ACCDH931599DH931600
length1,1211,172
definitionDH931599|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D17, 5' end.DH931600|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaagctaaagattacttttccctggttatttttttcagacttt
acataggcagaatcatctacctataatcttggaattatttttctctggtg
gtcatctcttgacatttctcatttccttttcccattgccgagctccggct
tctgctttcattcgcctctaacacaatttattcaaggtcttgttctaagc
agttttagtgaaatgggtagcttatttctgctgtgtgcagatgactctat
cacaaatgatacatttgtgtcctggtcttctctgagcttaagacttaaca
gtcaatgtgacacctaccatttcctatttgaaaacttcagtctaagacca
cacaaacatttgccttcctcctagctgccccctgcccagccattgtttct
agtctctgaaacatagcagcacccagttcatatagtgctagagaaggtct
tttatcagtcactatacctcactgcctctaaactcagtcttaacatgtcc
tctgtagtagtagctcaggtaactcttcaattttcaggctcagctttgtc
aacatccaactccaagtcactattgtcccttgtttattgtatagccttcc
acgtaacaactaaacagatcgacactctgctgcctgtgccctggactgcc
cactaccggtccctacttgctctttgggtttggggatgaggtggcaagga
atcaatggcatagactctgggagcaggtaagaaaaaccacagcaagctca
tctggtgctgttgcaaactcctttaataccctccatcacgtcccattggt
cccaagaaagcatctcttctaaactgcagttccagattggcctgcattgt
ctgcgttaacaggtaggtccttctacagaggacctaatttatttaaaggc
tagtttattcagaggctgccacgtgccgcgctattccccctacagcactc
cattttaaaaccctgctctagtttatattacacagaagaattctttttta
tttattttatgtttatgagtgctgtagcccatgtatgcctacatgccaga
ggaggcatagacctccttaatgattggtgtaagccatcacatgttttcag
atcgaactcagaacctctggc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatactgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagatttttattgaa
aggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
atggaggagctagagaagtagccaaggagctaaagggatctgcaacccta
taggtggaacaacattatgagcttacagtaccccgagcacttgactctag
ctgcattatttatcaaagaatggctagtcgcatcactgaagagaggccca
tggactgcaacttaatggcccagttcagggaataccaggccaaaggggag
tgggtgggtcaagggtaatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41037588_41038714
seq2: B6Ng01-130D17.b_45_1165

seq1  GAATTCAGAAGCTAAAGATTACTTTTCCCTGGTTATTTTTTTCAGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGCTAAAGATTACTTTTCCCTGGTTATTTTTTTCAGACTTT  50

seq1  ACATAGGCAGAATCATCTACCTATAATCTTGGAATTATTTTTCTCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGCAGAATCATCTACCTATAATCTTGGAATTATTTTTCTCTGGTG  100

seq1  GTCATCTCTTGACATTTCTCATTTCCTTTTCCCATTGCCGAGCTCCGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCTTGACATTTCTCATTTCCTTTTCCCATTGCCGAGCTCCGGCT  150

seq1  TCTGCTTTCATTCGCCTCTAACACAATTTATTCAAGGTCTTGTTCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCATTCGCCTCTAACACAATTTATTCAAGGTCTTGTTCTAAGC  200

seq1  AGTTTTAGTGAAATGGGTAGCTTATTTCTGCTGTGTGCAGATGACTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTGAAATGGGTAGCTTATTTCTGCTGTGTGCAGATGACTCTAT  250

seq1  CACAAATGATACATTTGTGTCCTGGTCTTCTCTGAGCTTAAGACTTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGATACATTTGTGTCCTGGTCTTCTCTGAGCTTAAGACTTAACA  300

seq1  GTCAATGTGACACCTACCATTTCCTATTTGAAAACTTCAGTCTAAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTGACACCTACCATTTCCTATTTGAAAACTTCAGTCTAAGACCA  350

seq1  CACAAACATTTGCCTTCCTCCTAGCTGCCCCCTGCCCAGCCATTGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATTTGCCTTCCTCCTAGCTGCCCCCTGCCCAGCCATTGTTTCT  400

seq1  AGTCTCTGAAACATAGCAGCACCCAGTTCATATAGTGCTAGAGAAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGAAACATAGCAGCACCCAGTTCATATAGTGCTAGAGAAGGTCT  450

seq1  TTTATCAGTCACTATACCTCACTGCCTCTAAACTCAGTCTTAACATGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGTCACTATACCTCACTGCCTCTAAACTCAGTCTTAACATGTCC  500

seq1  TCTGTAGTAGTAGCTCAGGTAACTCTTCAATTTTCAGGCTCAGCTTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTAGTAGCTCAGGTAACTCTTCAATTTTCAGGCTCAGCTTTGTC  550

seq1  AACATCCAACTCCAAGTCACTATTGTCCCTTGTTTATTGTATAGCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAACTCCAAGTCACTATTGTCCCTTGTTTATTGTATAGCCTTCC  600

seq1  ACGTAACAACTAAACAGATCGACACTCTGCTGCCTGTGCCCTGGACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACAACTAAACAGATCGACACTCTGCTGCCTGTGCCCTGGACTGCC  650

seq1  CACTACCGGTCCCTACTTGCTCTTTGGGTTTGGGGATGAGGTGGCAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCGGTCCCTACTTGCTCTTTGGGTTTGGGGATGAGGTGGCAAGGA  700

seq1  ATCAATGGCATAGACTCTGGGAGCAGGTAAGAAAAACCACAGCAAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGCATAGACTCTGGGAGCAGGTAAGAAAAACCACAGCAAGCTCA  750

seq1  TCTGGTGCTGTTGCAAACTCCTTTAATACCCTCCATCACGTCCCATTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCTGTTGCAAACTCCTTTAATACCCTCCATCACGTCCCATTGGT  800

seq1  CCCAAGAAAGCATCTCTTCTAAACTGCAGTTCCAGATTGGCCTGCATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAAGCATCTCTTCTAAACTGCAGTTCCAGATTGGCCTGCATTGT  850

seq1  CTGCGTTAACAGGTAGGTCCTTCTACAGAGGACCTAATTTATTTAAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTAACAGGTAGGTCCTTCTACAGAGGACCTAATTTATTTAAAGGC  900

seq1  TAGTTTATTCAGAGGCTGCCACGTGCCGCGCTATTCCCCCTACAGCACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATTCAGAGGCTGCCACGTGCCGCGCTATTCCCCCTACAGCACTC  950

seq1  CATTTTAAAACCCTGCTCTAGTTTATATTACACAGAAGAATTCTTTTTAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATTTTAAAACCCTGCTCTAGTTTATATTACACAGAAGAATTCTTTTTTA  1000

seq1  TTTATTTTATGTATATGAGTGCTGTAGCCCCATGTATGCCTACATGCCAG  1050
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TTTATTTTATGTTTATGAGTGCTGTAG-CCCATGTATGCCTACATGCCAG  1049

seq1  AGGAGGGCATTAGAACTCCTTATAGATGGTTGTAAGCCATCACATTGTTT  1100
      |||| |||| |||| |||||||  ||| | |||||||||||||| |||||
seq2  AGGA-GGCA-TAGACCTCCTTAATGATTGGTGTAAGCCATCACA-TGTTT  1096

seq1  CTAGGAATCGAACTCAGGACCTCTGGC  1127
        ||  ||||||||||| |||||||||
seq2  TCAG--ATCGAACTCAGAACCTCTGGC  1121