BAC Information

Click to search

BAC

Clone NameB6Ng01-130E06
Chromosome17 (Build37)
Map Location 39,166,484 - 39,376,338
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130E06.bB6Ng01-130E06.g
ACCDH931625DH931626
length1,0711,029
definitionDH931625|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E06, 5' end.DH931626|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,375,273 - 39,376,338)(39,166,484 - 39,167,521)
sequence
gaattcattagccaaccaagagccaaagaactccaaatagtctgtggctt
ccactttgtaggttaacatcaattgctcttaaagcttgattgtatttcta
aatattctcccaagactgtttctatatgtacaattccacatttcttcact
atggctgcaaggttatgtgcattcccatgaagctgatgcaatcttaaagc
caaagggagatgttgcccttgtaacttggctctatagtggaacatctatg
acaaataactaaactaaatatttttcaacatataaaatatcatattctag
gatatctgtttctttgagcatcttgacttccttaatccatttgatgccat
tttataatctatctataaagtatgcatttacataggaaagaaaaataatt
gatgtgtgatttgtaatgttttatttagaagctaggttagtaaataactt
cggggaaaataacctgtggggttttttttgttgttgttgtttttgttttt
tttaaacagctatgtaagatcctattctgatttcattacataatgagcag
caatatggaactgtaaggtaatttattaaaacagtacactcttaattttt
ttccctttccatttatcattccaatcatgctaaataagtcaatcaaagat
ggggaaatttccccacaagtgcaacagagttagagacagagccttctcct
tttcagaagcccaacacacacatcaagctacacaaccataatatatacac
aataaacctagcacatacacatgcatactccctgactatttttcatttag
tgccatgaaccatggatattagtttctgtaggctgttttcttgtgttgtc
cctgactttctggctcttataatcctttctcccctttttttgcagattct
tcaagaaaccagggatacaacctatagaagaactggaatgaatattccac
acaaggagataagtacacacagaacacacaagatacttgtcagttcccaa
tgaactcatatgtaattcttgctctgtctgtcggctatctgctcccctct
cggctctctccctctggctct
gaattctttctccttacaatcaccaaagtaccttcctgatactccttcta
tatagattcaagagactatattcctttatttaatctttctgttggctggt
attgcagtgtatctgaccatgcataatgaaataaattcataacaaggaca
ctctgtgttaagagcagtcatcatctttttctttgtttatatagctgtac
tgttcttcataaaaggtcaaagggattaattttctttgtaagggtataac
catctgtaaaatgaattaactattccttaggagagtttaaacatttcttt
actgttcatgtaactaattactgaaacttattagtattcaaccatgtaaa
gcctttctgtattatctacgtactggcatcagagtttacagcagatatat
gctattaccccagggtattacatgagtaaaaaataaaaataactagagta
tcaacatattatttacacatatattatttttattaattattcaatttatt
tacatttcataatttggcacatcttgacaataaggataaatctttcctca
tcgtcctcaccttcactttagagagattccccccagtttgccacagggtc
atcaagtctctacagagtttggaacatcttcttgtactgaggctagagaa
gataatcttatgctacaaatgtgccaggggccttgggtcagcccatgtat
gctctttggttggtggctcactctctggtagctcccaaggggtccaggta
gttaacatattgttctgtacatgaggatgccatcctattcattccttcag
tgcttcccctaaccgtttcatatggttccctaacattaattctatacttg
ccttaaaactacaaggaggatttcagaaaatgttccctatgaactttatg
caaaattaatccctaaaaaagaagaaaacttagaaactgaatcaagaaca
tgttaatcatcaatcatctgttcaataagttttactacaaggaatgcagg
atgatctatatacaaatatccgtcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39375273_39376338
seq2: B6Ng01-130E06.b_45_1115 (reverse)

seq1  AGAGACAGAGAGAGAGAG-----------ACAGATAGACAGACAGACAGA  39
      |||| ||||| |||||||            ||||||| | ||||||||||
seq2  AGAGCCAGAGGGAGAGAGCCGAGAGGGGAGCAGATAG-CCGACAGACAGA  49

seq1  GCAAGAATTTACATTTGGGTTCATTGTGAGCTGACAGGTATCTTGTGTGT  89
      ||||||| |||||| || |||||||| || |||||| |||||||||||||
seq2  GCAAGAA-TTACATATGAGTTCATTGGGAACTGACAAGTATCTTGTGTGT  98

seq1  TCTTGTGTGTACTTATCTTCCTTGTGTTGGAATATTCATTCCAGTTTCTT  139
      || |||||||||||||| |||||||| ||||||||||||||||| |||||
seq2  TC-TGTGTGTACTTATC-TCCTTGTG-TGGAATATTCATTCCAG-TTCTT  144

seq1  CTATAGGTTTGTATCCCTGGTTTCTTGAAGAATCTGCAAAAAAGGGGGAG  189
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATAGG-TTGTATCCCTGGTTTCTTGAAGAATCTGCAAAAAAAGGGGAG  193

seq1  AAAGGATTATAAGAGCCAGAAAGTCAAGGACAACACAAGAAAACAGCCTA  239
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGGATTATAAGAGCCAGAAAGTCAGGGACAACACAAGAAAACAGCCTA  243

seq1  CAGAAACTAATATCCATGGTTCATGGCACTAAATG-AAAATAGTCAGGGA  288
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGAAACTAATATCCATGGTTCATGGCACTAAATGAAAAATAGTCAGGGA  293

seq1  GTATGCATGTGTATGTGCTAGGTTTATTGTGTATATATTATGGTTGTGTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGTGTATGTGCTAGGTTTATTGTGTATATATTATGGTTGTGTA  343

seq1  GCTTGATGTGTGTGTTGGGCTTCTGAAAAGGAGAAGGCTCTGTCTCTAAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATGTGTGTGTTGGGCTTCTGAAAAGGAGAAGGCTCTGTCTCTAAC  393

seq1  TCTGTTGCACTTGTGGGGAAATTTCCCCATCTTTGATTGACTTATTTAGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCACTTGTGGGGAAATTTCCCCATCTTTGATTGACTTATTTAGC  443

seq1  ATGATTGGAATGATAAATGGAAAGGGAAAAAAATTAAGAGTGTACTGTTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGGAATGATAAATGGAAAGGGAAAAAAATTAAGAGTGTACTGTTT  493

seq1  TAATAAATTACCTTACAGTTCCATATTGCTGCTCATTATGTAATGAAATC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTACCTTACAGTTCCATATTGCTGCTCATTATGTAATGAAATC  543

seq1  AGAATAGGATCTTACATAGCTGTTTAAAAAAAACAAAAACAACAACAACA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGATCTTACATAGCTGTTTAAAAAAAACAAAAACAACAACAACA  593

seq1  AAAAAAACCCCACAGGTTATTTTCCCCGAAGTTATTTACTAACCTAGCTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCCACAGGTTATTTTCCCCGAAGTTATTTACTAACCTAGCTT  643

seq1  CTAAATAAAACATTACAAATCACACATCAATTATTTTTCTTTCCTATGTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAACATTACAAATCACACATCAATTATTTTTCTTTCCTATGTA  693

seq1  AATGCATACTTTATAGATAGATTATAAAATGGCATCAAATGGATTAAGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACTTTATAGATAGATTATAAAATGGCATCAAATGGATTAAGGA  743

seq1  AGTCAAGATGCTCAAAGAAACAGATATCCTAGAATATGATATTTTATATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGATGCTCAAAGAAACAGATATCCTAGAATATGATATTTTATATG  793

seq1  TTGAAAAATATTTAGTTTAGTTATTTGTCATAGATGTTCCACTATAGAGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATATTTAGTTTAGTTATTTGTCATAGATGTTCCACTATAGAGC  843

seq1  CAAGTTACAAGGGCAACATCTCCCTTTGGCTTTAAGATTGCATCAGCTTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACAAGGGCAACATCTCCCTTTGGCTTTAAGATTGCATCAGCTTC  893

seq1  ATGGGAATGCACATAACCTTGCAGCCATAGTGAAGAAATGTGGAATTGTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATGCACATAACCTTGCAGCCATAGTGAAGAAATGTGGAATTGTA  943

seq1  CATATAGAAACAGTCTTGGGAGAATATTTAGAAATACAATCAAGCTTTAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAAACAGTCTTGGGAGAATATTTAGAAATACAATCAAGCTTTAA  993

seq1  GAGCAATTGATGTTAACCTACAAAGTGGAAGCCACAGACTATTTGGAGTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTGATGTTAACCTACAAAGTGGAAGCCACAGACTATTTGGAGTT  1043

seq1  CTTTGGCTCTTGGTTGGCTAATGAATTC  1066
      ||||||||||||||||||||||||||||
seq2  CTTTGGCTCTTGGTTGGCTAATGAATTC  1071

seq1: chr17_39166484_39167521
seq2: B6Ng01-130E06.g_68_1096

seq1  GAATTCTTTCTCCTTACAATCACCAAAGTACCTTCCTGATACTCCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCCTTACAATCACCAAAGTACCTTCCTGATACTCCTTCTA  50

seq1  TATAGATTCAAGAGACTATATTCCTTTATTTAATCTTTCTGTTGGCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTCAAGAGACTATATTCCTTTATTTAATCTTTCTGTTGGCTGGT  100

seq1  ATTGCAGTGTATCTGACCATGCATAATGAAATAAATTCATAACAAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGTATCTGACCATGCATAATGAAATAAATTCATAACAAGGACA  150

seq1  CTCTGTGTTAAGAGCAGTCATCATCTTTTTCTTTGTTTATATAGCTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTTAAGAGCAGTCATCATCTTTTTCTTTGTTTATATAGCTGTAC  200

seq1  TGTTCTTCATAAAAGGTCAAAGGGATTAATTTTCTTTGTAAGGGTATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCATAAAAGGTCAAAGGGATTAATTTTCTTTGTAAGGGTATAAC  250

seq1  CATCTGTAAAATGAATTAACTATTCCTTAGGAGAGTTTAAACATTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAAAATGAATTAACTATTCCTTAGGAGAGTTTAAACATTTCTTT  300

seq1  ACTGTTCATGTAACTAATTACTGAAACTTATTAGTATTCAACCATGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCATGTAACTAATTACTGAAACTTATTAGTATTCAACCATGTAAA  350

seq1  GCCTTTCTGTATTATCTACGTACTGGCATCAGAGTTTACAGCAGATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGTATTATCTACGTACTGGCATCAGAGTTTACAGCAGATATAT  400

seq1  GCTATTACCCCAGGGTATTACATGAGTAAAAAATAAAAATAACTAGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACCCCAGGGTATTACATGAGTAAAAAATAAAAATAACTAGAGTA  450

seq1  TCAACATATTATTTACACATATATTATTTTTATTAATTATTCAATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATATTATTTACACATATATTATTTTTATTAATTATTCAATTTATT  500

seq1  TACATTTCATAATTTGGCACATCTTGACAATAAGGATAAATCTTTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCATAATTTGGCACATCTTGACAATAAGGATAAATCTTTCCTCA  550

seq1  TCGTCCTCACCTTCACTTTAGAGAGATTCCCCCCAGTTTGCCACAGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTCACCTTCACTTTAGAGAGATTCCCCCCAGTTTGCCACAGGGTC  600

seq1  ATCAAGTCTCTACAGAGTTTGGAACATCTTCTTGTACTGAGGCTAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTCTACAGAGTTTGGAACATCTTCTTGTACTGAGGCTAGAGAA  650

seq1  GATAATCTTATGCTACAAATGTGCCAGGGGCCTTGGGTCAGCCCATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCTTATGCTACAAATGTGCCAGGGGCCTTGGGTCAGCCCATGTAT  700

seq1  GCTCTTTGGTTGGTGGCTCACTCTCTGGTAGCTCCC-AGGGGTCCAGGTT  749
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  GCTCTTTGGTTGGTGGCTCACTCTCTGGTAGCTCCCAAGGGGTCCAGG-T  749

seq1  AGTTAACATATTGTTCTGTACATGAGGATGCCATCCTATTCATTCCTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACATATTGTTCTGTACATGAGGATGCCATCCTATTCATTCCTTCA  799

seq1  GTGCTTCCCCTAACCGTTTCATATGGTTCCCTAACATTAATTCTATACTT  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCTTCCCCTAACCGTTTCATATGGTTCCCTAACATTAATTCTATAC-T  848

seq1  TGCCTTAGACATACAAGGAGGATTTCAGAAAATGTTCCTAATGAACATAT  899
      ||||||| |  |||||||||||||||||||||||||||  |||||| | |
seq2  TGCCTTAAAACTACAAGGAGGATTTCAGAAAATGTTCCCTATGAAC-TTT  897

seq1  ATGCAAAATTAATCACTAAAAAAG-AGAAAACTTTAGAAACTGAATTCAA  948
      |||||||||||||| ||||||||| ||||||| |||||||||||| ||||
seq2  ATGCAAAATTAATCCCTAAAAAAGAAGAAAAC-TTAGAAACTGAA-TCAA  945

seq1  GAACATGTTAAATCATCATCCATCATGTTCAATAAGGTTTTACTAC-AGG  997
      ||||||||| ||||||||  |||| |||||||||| |||||||||| |||
seq2  GAACATGTT-AATCATCAATCATC-TGTTCAATAA-GTTTTACTACAAGG  992

seq1  GATGCAAGGATGATTCATTATACAATAATTCCGTCAATAAA  1038
       |||| ||||||| ||  ||||||| |  |||||| |||||
seq2  AATGC-AGGATGA-TCTATATACAA-ATATCCGTC-ATAAA  1029