BAC Information

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BAC

Clone NameB6Ng01-131C24
Chromosome17 (Build37)
Map Location 25,421,456 - 25,549,970
singlet/doubletdoublet
Overlap genePrss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
Upstream geneAbca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i
Downstream geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131C24.bB6Ng01-131C24.g
ACCDH932309DH932310
length1,090694
definitionDH932309|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C24, 5' end.DH932310|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,548,871 - 25,549,970)(25,421,456 - 25,422,148)
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtagatgtacc
acattttctgtatccattcctctgttgagggacatctgggttctttccag
cttctggctattataaataaggctgcaatgaacatagtggagcatgtgtc
cttcttaccagttggaacatcttctggttagaattcttagcttgcatagc
tcaccagtagctctgactggtgctccatgtctccttagggtcacctcaga
gcccaaaggatgtttgtgggactcaccagcttagttcctgaggttaagca
gaggccagggtcatcagcctgccctgccctggggtgatttgtataacata
ggtcagacctagggacaggaaagggggacatcgggatttgtgctaagtgg
ttgatatctggaggaggggaggtgccttcctagagcatcatgaagacccc
taggatattggggtatgatgctggtatagttactgagcttatggtctgaa
ggtatagataaatgcagtggcccataggaaccctggccagtgggaagtgt
gtgtgtgggagggtctttgctggtaccaaatggggtgttccaaagcctag
ctagacagctagagtaaatgggaaccccggcatagtgggggcgctcaggt
gtgagcccttgttctccaatgaggttgcacctaatgtcctgccctcgaga
cagtgactgctctactgggggtgggggcgtgtgtctcaggatcctgtcag
catatgcagctagagcgaggccctagtgctttatcctaatgatgtttaaa
accccagaaactcgggagtgggggaacagctcagtagctaagagtgtggg
actgctcttgcagaggacccacattgggttcccagcacccacaactcact
tgtaactacagttcctggagtatgacacttctgtctcaggcgtatatgtg
tgtacacacacacacacacacacacacacacacacatacacacacacact
cgggcacagacacacacttgcacaacttaaaaataactttaactggcaat
ttaaactcctgactgccagttcacttgaaacattaaaaaa
gaattcccctaactgacgataaaggctgggcctgtgggcccaccagaggt
ctccattctcaaacggggagaccctgcatgcaggaatttcagctgaataa
acactctttgcttttgcatactatttgagtctggggtatcattcttcagt
gattcttggatcctaacaaggacgagctgagcaattcaatcagaggctga
gaaacaagcaagattacatgagtcagtttgaagaggagttttgagccaga
atggctgagttgaaccaaccagccagagttcagaaagagctagaaagggt
gagcttattcagcagtaagcctcccagatgacaatgacatctggttaata
agagatacttttatagtgatgtgtgtgtgtgtctgtgtgtgtgtgctcgc
gagcacactcacgcgagttctctctcacaagtgcctgagttttagcagca
cttctctatggcaagacagtatgccttaggtgtgaggcccattcaaaaga
atcaaagtttaaaaaatggtctgagaggagggtgggggaagaaatagaaa
tcactttttcaagaaagccaccagttttccagaataggtttatgggaaga
caaacatgcctcattgcaccttggaaggtgcctatgtttggcatctggtt
ccctagaatgcatgcatcgttggctctctgttgccccctgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25548871_25549970
seq2: B6Ng01-131C24.b_39_1128 (reverse)

seq1  TTTTTTAATGGTTTTCAAGGTGAACTGGCCAGTCAGGAGTTTTAAATTTC  50
      ||||||||||  |||||| ||||||||| |||||||||||||  || || 
seq2  TTTTTTAATG--TTTCAA-GTGAACTGG-CAGTCAGGAGTTT--AAATTG  44

seq1  CCAGTTTAAAGTTTATTTTTAAGTTGTGCAAGTGTGTGTCTGTGCCTGTG  100
      |||| |||||| |||||||||||||||||||||||||||||||||| | |
seq2  CCAG-TTAAAG-TTATTTTTAAGTTGTGCAAGTGTGTGTCTGTGCCCGAG  92

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACA  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACA  142

seq1  CATATACGCCCTGAGGACAGAAGTGTCATAACTCCAGGAACTGTAGTTAC  200
      |||||||| ||||| |||||||||||||| ||||||||||||||||||||
seq2  CATATACG-CCTGA-GACAGAAGTGTCAT-ACTCCAGGAACTGTAGTTAC  189

seq1  AAGTGAGTTGTGGGTGCTGGGAACCCAATGTGGGTCCTCTGCAAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTGTGGGTGCTGGGAACCCAATGTGGGTCCTCTGCAAGAGCAG  239

seq1  T-CCACACTCTTAGCTACTGAGCTGTTCCCCCACTCCCGAGTTTCTGGGG  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACTCTTAGCTACTGAGCTGTTCCCCCACTCCCGAGTTTCTGGGG  289

seq1  TTTTAAACATCATTAGGATAAAGCACTAGGGCCTCGCTCTAGCTGCATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACATCATTAGGATAAAGCACTAGGGCCTCGCTCTAGCTGCATAT  339

seq1  GCTGACAGGATCCTGAGACACACGCCCCCACCCCCAGTAGAGCAGTCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGGATCCTGAGACACACGCCCCCACCCCCAGTAGAGCAGTCACT  389

seq1  GTCTCGAGGGCAGGACATTAGGTGCAACCTCATTGGAGAACAAGGGCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAGGGCAGGACATTAGGTGCAACCTCATTGGAGAACAAGGGCTCA  439

seq1  CACCTGAGCGCCCCCACTATGCCGGGGTTCCCATTTACTCTAGCTGTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCGCCCCCACTATGCCGGGGTTCCCATTTACTCTAGCTGTCTA  489

seq1  GCTAGGCTTTGGAACACCCCATTTGGTACCAGCAAAGACCCTCCCACACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTTTGGAACACCCCATTTGGTACCAGCAAAGACCCTCCCACACA  539

seq1  CACACTTCCCACTGGCCAGGGTTCCTATGGGCCACTGCATTTATCTATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCCACTGGCCAGGGTTCCTATGGGCCACTGCATTTATCTATAC  589

seq1  CTTCAGACCATAAGCTCAGTAACTATACCAGCATCATACCCCAATATCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACCATAAGCTCAGTAACTATACCAGCATCATACCCCAATATCCT  639

seq1  AGGGGTCTTCATGATGCTCTAGGAAGGCACCTCCCCTCCTCCAGATATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTTCATGATGCTCTAGGAAGGCACCTCCCCTCCTCCAGATATCA  689

seq1  ACCACTTAGCACAAATCCCGATGTCCCCCTTTCCTGTCCCTAGGTCTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTAGCACAAATCCCGATGTCCCCCTTTCCTGTCCCTAGGTCTGAC  739

seq1  CTATGTTATACAAATCACCCCAGGGCAGGGCAGGCTGATGACCCTGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTATACAAATCACCCCAGGGCAGGGCAGGCTGATGACCCTGGCCT  789

seq1  CTGCTTAACCTCAGGAACTAAGCTGGTGAGTCCCACAAACATCCTTTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAACCTCAGGAACTAAGCTGGTGAGTCCCACAAACATCCTTTGGG  839

seq1  CTCTGAGGTGACCCTAAGGAGACATGGAGCACCAGTCAGAGCTACTGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTGACCCTAAGGAGACATGGAGCACCAGTCAGAGCTACTGGTG  889

seq1  AGCTATGCAAGCTAAGAATTCTAACCAGAAGATGTTCCAACTGGTAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCAAGCTAAGAATTCTAACCAGAAGATGTTCCAACTGGTAAGAA  939

seq1  GGACACATGCTCCACTATGTTCATTGCAGCCTTATTTATAATAGCCAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATGCTCCACTATGTTCATTGCAGCCTTATTTATAATAGCCAGAA  989

seq1  GCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATG  1039

seq1  TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATT  1089

seq1  C  1100
      |
seq2  C  1090

seq1: chr17_25421456_25422148
seq2: B6Ng01-131C24.g_70_763

seq1  GAATTCCCCTAACTGACGATAAAGGCTGGGCCTGTGGGCCCACCAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAACTGACGATAAAGGCTGGGCCTGTGGGCCCACCAGAGGT  50

seq1  CTCCATTCTCAAACGGGGAGACCCTGCATGCAGGAATTTCAGCTGAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTCAAACGGGGAGACCCTGCATGCAGGAATTTCAGCTGAATAA  100

seq1  ACACTCTTTGCTTTTGCATACTATTTGAGTCTGGGGTATCATTCTTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTGCTTTTGCATACTATTTGAGTCTGGGGTATCATTCTTCAGT  150

seq1  GATTCTTGGATCCTAACAAGGACGAGCTGAGCAATTCAATCAGAGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGGATCCTAACAAGGACGAGCTGAGCAATTCAATCAGAGGCTGA  200

seq1  GAAACAAGCAAGATTACATGAGTCAGTTTGAAGAGGAGTTTTGAGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCAAGATTACATGAGTCAGTTTGAAGAGGAGTTTTGAGCCAGA  250

seq1  ATGGCTGAGTTGAACCAACCAGCCAGAGTTCAGAAAGAGCTAGAAAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGTTGAACCAACCAGCCAGAGTTCAGAAAGAGCTAGAAAGGGT  300

seq1  GAGCTTATTCAGCAGTAAGCCTCCCAGATGACAATGACATCTGGTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATTCAGCAGTAAGCCTCCCAGATGACAATGACATCTGGTTAATA  350

seq1  AGAGATACTTTTATAGTGATGTGTGTGTGTGTCTGTGTGTGTGTGCTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACTTTTATAGTGATGTGTGTGTGTGTCTGTGTGTGTGTGCTCGC  400

seq1  GAGCACACTCACGCGAGTTCTCTCTCACAAGTGCCTGAGTTTTAGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACTCACGCGAGTTCTCTCTCACAAGTGCCTGAGTTTTAGCAGCA  450

seq1  CTTCTCTATGGCAAGACAGTATGCCTTAGGTGTGAGGCCCATTCAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTATGGCAAGACAGTATGCCTTAGGTGTGAGGCCCATTCAAAAGA  500

seq1  ATCAAAGTTTAAAAAATGGTCTGAGAGGAGGGTGGGGGAAGAAATAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTTTAAAAAATGGTCTGAGAGGAGGGTGGGGGAAGAAATAGAAA  550

seq1  TCACTTTTTCAAGAAAGCCACCAG-TTTCCAGAATAGGTTTATGGGAAGA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCACTTTTTCAAGAAAGCCACCAGTTTTCCAGAATAGGTTTATGGGAAGA  600

seq1  CAAACATGCCTCAATGCACCTTGGAAGGTGCCTAGGTTTGGCATCTGGTT  649
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  CAAACATGCCTCATTGCACCTTGGAAGGTGCCTATGTTTGGCATCTGGTT  650

seq1  CCCTAGAAGGCATGCAGCGTTGGCTCTCTGCTGCCCCCTGATGG  693
      |||||||| ||||||| ||||||||||||| |||||||||||||
seq2  CCCTAGAATGCATGCATCGTTGGCTCTCTGTTGCCCCCTGATGG  694