BAC Information

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BAC

Clone NameB6Ng01-131E23
Chromosome17 (Build37)
Map Location 23,774,680 - 23,775,904
singlet/doubletsinglet
Overlap geneMmp25
Upstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062
Downstream geneLOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E23.bB6Ng01-131E23.g
ACCDH932399DH932400
length1,2231,108
definitionDH932399|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E23, 5' end.DH932400|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttccctcctagattcctgagtatctgctgtcagagccttttag
gatttggtccgtctacactggggtgacttgcttcactgaaagtagatggc
agtcaagtctgagacacctatacagcaacatctggactagtgtttggcca
gtccactgaggcacaaccaaatcaacttaaaattaccactatagaggcct
ttcaagtgcccacctcaaagctgggctggtgtgaaacattccagcatctc
cctgcccatcagttgaagcagaaacttgactggtacttacagtacacaca
gagacagttgccagaaatcacaacagaaagttctcagcttaagtgtcctg
aagaggcagcagtctagtgctcttggatagggtggtggtgtctctttctg
ctcaaatacacaccaagtgaccaagtgccagatgcggtggtaccaagggt
aatggcacatacctgaaatcacagtacttgaaaagatgaggcaggaggat
tgtgagattgagaccagctgaaggtctatagccagactcaactcaagaca
aacatttttattttaaaacacagggttccaagcaggtgtgtagagtgtgc
acctgtaatcctagtatgtggaaggctaaagcaggtttgtagcaagtgtg
agggctacatagtaggatgagggccagcctaggctacagagaatgatcct
gtctcaaacaggacagaacaaagaatgctgagcaccagataccacgggcc
agatggaccaagtcttattcatctcaagtacaaaggtacaggggacactc
agggaaagcacacaagccagtgagtggagtgccatgtagttaggtgggag
gagccactgaggggggacaccgtctgcaacatccatggctagaaagttgt
gtcctcagtggggatgtcacacatgagtggaccctatgttggaaaaggtt
ttgggaagtaagcagaatttaaaacaacaggttttggaaagcactgagga
cacatcaagtagttctgcatcctagaaatggtcctggatgcatgaggaga
tggagtggagaaatggcaaagtggtggggagtagaacaaagtctagggaa
agagaaatatggggggcgatggcggaggctagatctgagggagtggacca
gctcgattgtgaatctctagttcgggtccagggggatgactgtccagtca
gtctagacatctctacaagactg
gaattcctgatctttccaaaacttttatcatgaatgtgtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttttacttcgatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctttccagaaatttgtccatttcgtccaggttttcca
cttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctgtgccctctagttagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagctcttcttgttccacttggtaatttcacccctgagtttgattattt
cctgccgtctactcctcttgggtgaatttgcttccttttttttctagagc
ttatagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttct
tggaggactcagagctatgagttccctcttagaaatgctttcattggtgc
cctaagtttggggacgtgggcctcattcattaagctctcaaaaggcttaa
tttcttcttattctctctgacgagggtatatgagaagagggtgttccatt
acaccgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23774680_23775904
seq2: B6Ng01-131E23.b_47_1269 (reverse)

seq1  CAGTCTTGTAG-GATG-CTGAGCTGAACCTGGACCATGTCATCCTCCCTG  48
      ||||||||||| |||| ||   ||||  ||||||   ||||||| |||||
seq2  CAGTCTTGTAGAGATGTCTAGACTGA--CTGGAC--AGTCATCC-CCCTG  45

seq1  GCACCAGAACTAGAGA-TCACAATCTGGGCCTGCTCCAACCTCCCTCAGA  97
      | ||| |||||||||| ||||||||  |  ||| ||||  ||||||||||
seq2  G-ACCCGAACTAGAGATTCACAATC--GAGCTGGTCCA--CTCCCTCAGA  90

seq1  TCTAGCCCTCCGCCATCG-CCCCCATA-TTCTC-TTCCCTAGACTTTG-T  143
      ||||| |||||||||||| |||||||| ||||| |||||||||||||| |
seq2  TCTAG-CCTCCGCCATCGCCCCCCATATTTCTCTTTCCCTAGACTTTGTT  139

seq1  CTACT-CCCACCACTTTGCC-TTTCTCCACTCCATCTCCTCATGCATCCA  191
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  CTACTCCCCACCACTTTGCCATTTCTCCACTCCATCTCCTCATGCATCCA  189

seq1  GGACCATTTCTAGGATGCAGAACTACTTGATGTGTCCTCAGTGCTTTCCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATTTCTAGGATGCAGAACTACTTGATGTGTCCTCAGTGCTTTCCA  239

seq1  AAACCTGTTGTTTTAAATTCTGCTTACTTCCCAAAACCTTTTCCAACATA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTGTTTTAAATTCTGCTTACTTCCCAAAACCTTTTCCAACATA  289

seq1  GGGTCCACTCATGTGTGACATCCCCACTGAGGACACAACTTTCTAGCCAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCACTCATGTGTGACATCCCCACTGAGGACACAACTTTCTAGCCAT  339

seq1  GGATGTTGCAGACGGTGTCCCCCCTCAGTGGCTCCTCCCACCTAACTACA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGCAGACGGTGTCCCCCCTCAGTGGCTCCTCCCACCTAACTACA  389

seq1  TGGCACTCCACTCACTGGCTTGTGTGCTTTCCCTGAGTGTCCCCTGTACC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCCACTCACTGGCTTGTGTGCTTTCCCTGAGTGTCCCCTGTACC  439

seq1  TTTGTACTTGAGATGAATAAGACTTGGTCCATCTGGCCCGTGGTATCTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTGAGATGAATAAGACTTGGTCCATCTGGCCCGTGGTATCTGG  489

seq1  TGCTCAGCATTCTTTGTTCTGTCCTGTTTGAGACAGGATCATTCTCTGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCATTCTTTGTTCTGTCCTGTTTGAGACAGGATCATTCTCTGTA  539

seq1  GCCTAGGCTGGCCCTCATCCTACTATGTAGCCCTCACACTTGCTACAAAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGCTGGCCCTCATCCTACTATGTAGCCCTCACACTTGCTACAAAC  589

seq1  CTGCTTTAGCCTTCCACATACTAGGATTACAGGTGCACACTCTACACACC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAGCCTTCCACATACTAGGATTACAGGTGCACACTCTACACACC  639

seq1  TGCTTGGAACCCTGTGTTTTAAAATAAAAATGTTTGTCTTGAGTTGAGTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAACCCTGTGTTTTAAAATAAAAATGTTTGTCTTGAGTTGAGTC  689

seq1  TGGCTATAGACCTTCAGCTGGTCTCAATCTCACAATCCTCCTGCCTCATC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATAGACCTTCAGCTGGTCTCAATCTCACAATCCTCCTGCCTCATC  739

seq1  TTTTCAAGTACTGTGATTTCAGGTATGTGCCATTACCCTTGGTACCACCG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGTACTGTGATTTCAGGTATGTGCCATTACCCTTGGTACCACCG  789

seq1  CATCTGGCACTTGGTCACTTGGTGTGTATTTGAGCAGAAAGAGACACCAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCACTTGGTCACTTGGTGTGTATTTGAGCAGAAAGAGACACCAC  839

seq1  CACCCTATCCAAGAGCACTAGACTGCTGCCTCTTCAGGACACTTAAGCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTATCCAAGAGCACTAGACTGCTGCCTCTTCAGGACACTTAAGCTG  889

seq1  AGAACTTTCTGTTGTGATTTCTGGCAACTGTCTCTGTGTGTACTGTAAGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCTGTTGTGATTTCTGGCAACTGTCTCTGTGTGTACTGTAAGT  939

seq1  ACCAGTCAAGTTTCTGCTTCAACTGATGGGCAGGGAGATGCTGGAATGTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCAAGTTTCTGCTTCAACTGATGGGCAGGGAGATGCTGGAATGTT  989

seq1  TCACACCAGCCCAGCTTTGAGGTGGGCACTTGAAAGGCCTCTATAGTGGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAGCCCAGCTTTGAGGTGGGCACTTGAAAGGCCTCTATAGTGGT  1039

seq1  AATTTTAAGTTGATTTGGTTGTGCCTCAGTGGACTGGCCAAACACTAGTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGTTGATTTGGTTGTGCCTCAGTGGACTGGCCAAACACTAGTC  1089

seq1  CAGATGTTGCTGTATAGGTGTCTCAGACTTGACTGCCATCTACTTTCAGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTGCTGTATAGGTGTCTCAGACTTGACTGCCATCTACTTTCAGT  1139

seq1  GAAGCAAGTCACCCCAGTGTAGACGGACCAAATCCTAAAAGGCTCTGACA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGTCACCCCAGTGTAGACGGACCAAATCCTAAAAGGCTCTGACA  1189

seq1  GCAGATACTCAGGAATCTAGGAGGGAAGGAATTC  1225
      ||||||||||||||||||||||||||||||||||
seq2  GCAGATACTCAGGAATCTAGGAGGGAAGGAATTC  1223