BAC Information

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BAC

Clone NameB6Ng01-132F10
Chromosome17 (Build37)
Map Location 43,590,401 - 43,662,772
singlet/doubletdoublet
Overlap geneGpr116, Mep1a
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110
Downstream geneLOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132F10.bB6Ng01-132F10.g
ACCDH933166DH933167
length1,150451
definitionDH933166|Mus musculus domesticus DNA, BAC clone: B6Ng01-132F10, 5' end.DH933167|Mus musculus domesticus DNA, BAC clone: B6Ng01-132F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,590,401 - 43,591,536)(43,662,316 - 43,662,772)
sequence
gaattcttttctgtgtcacacgaagaataaacatggaaattttgattata
ggattcatctcaggctcactcttcccccttatggagcatgcttgttttat
atttacaaattgggcatacatacatgcagcatcatgaagcctagatgttc
tactagacgcttataagttctacatgggaaataggaactagatagcatga
atgacttcagaacggtctaagctactcagactgtaaatcccagtcccaac
cactgcctcttacagctcagtcccataaaactgcccctgacagggcagtc
tcagtacaccacccgatagagtagaactgtcacactgcccctcaacaggg
aatggccatcatactgcccctcccacaagaaaatgactgcccaaactcca
tccttttcattattttcagtgtttgggatcaaatccaggttctcccgcat
gctaagcaagcagtctatcattgaaccacctcccagacatcctttcatct
ctttaaaaccagataggtctcacaaatgcaaacttagacgagttcacttc
cagaccctggcaaccatacccttgatatcaaatatatctgagtctgaata
ttccgagaagtctgtggagactaaacctccactggatagagtgctccctg
ctcccattttggggagcactcaagagactagagaattgtcccttttcact
ttgaaagtcactaaattgacctcgatgtgaaatgatcgagtctttggaac
atcaaaactattgcactgcatacagatatttagcatttccaatgaagtgt
ggaagcttttgcacagtggcagtatcatagccaatgaggttatctgaggc
gcgatattgctaattgaaaacttttcccagtgaagtgagaagttacaaat
taacccaccgaatctaaactttgcaaaatatcaggcttctagaataccgt
tcttttttttgagaatgaggccagggtctaagttgggatgtgggccttgt
tcctgggggtatcaaggcctagtgattcctatgtaacctgctgtgctgga
taattctttatgtgggtcattcagttacacctttgaaccttggagcattt
ttttttcaggggagggggggctatactggaactttgggttatgtagtcag

cacacccctaagccccttaccccataaaaacacctagctttcaagccttg
gggccgacatctgttatctcctgtgtgggatgcatgtcggtccggagctc
tgtaattaaacgtcttcatgtaattacatcaagagatggtccttcgtgat
tttttgggtgcacgccgaatcggggattgggtgggggtttccccactaga
tctaacaactcccaattcctgggtgctttctgtttctatggaactgccat
ttctgctcattccatgcaaatgagtagatgaagggataacaatatctcca
ttgttcttttactcaaccacccactaagcaatacactcccagcaggtgtt
gtgttgtaagcacacatttaggtgctagtgacttgtcccaaagtgagcaa
tgcagtctcactccacagggaaggtgagatgttataaagtcaatactata
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43590401_43591536
seq2: B6Ng01-132F10.b_48_1197

seq1  GAATTCTTTTCTGTGTCACACGAAGAATAAACATGGAAATTTTGATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGTGTCACACGAAGAATAAACATGGAAATTTTGATTATA  50

seq1  GGATTCATCTCAGGCTCACTCTTCCCCCTTATGGAGCATGCTTGTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATCTCAGGCTCACTCTTCCCCCTTATGGAGCATGCTTGTTTTAT  100

seq1  ATTTACAAATTGGGCATACATACATGCAGCATCATGAAGCCTAGATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAATTGGGCATACATACATGCAGCATCATGAAGCCTAGATGTTC  150

seq1  TACTAGACGCTTATAAGTTCTACATGGGAAATAGGAACTAGATAGCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGACGCTTATAAGTTCTACATGGGAAATAGGAACTAGATAGCATGA  200

seq1  ATGACTTCAGAACGGTCTAAGCTACTCAGACTGTAAATCCCAGTCCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCAGAACGGTCTAAGCTACTCAGACTGTAAATCCCAGTCCCAAC  250

seq1  CACTGCCTCTTACAGCTCAGTCCCATAAAACTGCCCCTGACAGGGCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTCTTACAGCTCAGTCCCATAAAACTGCCCCTGACAGGGCAGTC  300

seq1  TCAGTACACCACCCGATAGAGTAGAACTGTCACACTGCCCCTCAACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACACCACCCGATAGAGTAGAACTGTCACACTGCCCCTCAACAGGG  350

seq1  AATGGCCATCATACTGCCCCTCCCACAAGAAAATGACTGCCCAAACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCATCATACTGCCCCTCCCACAAGAAAATGACTGCCCAAACTCCA  400

seq1  TCCTTTTCATTATTTTCAGTGTTTGGGATCAAATCCAGGTTCTCCCGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCATTATTTTCAGTGTTTGGGATCAAATCCAGGTTCTCCCGCAT  450

seq1  GCTAAGCAAGCAGTCTATCATTGAACCACCTCCCAGACATCCTTTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCAAGCAGTCTATCATTGAACCACCTCCCAGACATCCTTTCATCT  500

seq1  CTTTAAAACCAGATAGGTCTCACAAATGCAAACTTAGACGAGTTCACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACCAGATAGGTCTCACAAATGCAAACTTAGACGAGTTCACTTC  550

seq1  CAGACCCTGGCAACCATACCCTTGATATCAAATATATCTGAGTCTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGGCAACCATACCCTTGATATCAAATATATCTGAGTCTGAATA  600

seq1  TTCCGAGAAGTCTGTGGAGACTAAACCTCCACTGGATAGAGTGCTCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGAAGTCTGTGGAGACTAAACCTCCACTGGATAGAGTGCTCCCTG  650

seq1  CTCCCATTTTGGGGAGCACTCAAGAGACTAGAGAATTGTCCCTTTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTTTGGGGAGCACTCAAGAGACTAGAGAATTGTCCCTTTTCACT  700

seq1  TTGAAAGTCACTAAATTGACCTCGATGTGAAATGATCGAGTCTTTGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCACTAAATTGACCTCGATGTGAAATGATCGAGTCTTTGGAAC  750

seq1  ATCAAAACTATTGCACTGCATACAGATATTTAGCATTTCCAATGAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACTATTGCACTGCATACAGATATTTAGCATTTCCAATGAAGTGT  800

seq1  GGAAGC-TTTGCACAGTGGCAGTATCATAGCCAATGAGGTTTATCTGAGG  849
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAAGCTTTTGCACAGTGGCAGTATCATAGCCAATGAGG-TTATCTGAGG  849

seq1  CGCGATTATTGCTAATTGAAAACTTTTCCCAGTGAAGTGAGAAGTTACAA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGA-TATTGCTAATTGAAAACTTTTCCCAGTGAAGTGAGAAGTTACAA  898

seq1  AATAACCCACCGAATCTAAACTTTGCAAAATATCAGGCTTCTAGAATA-C  948
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTAACCCACCGAATCTAAACTTTGCAAAATATCAGGCTTCTAGAATACC  948

seq1  GCTC-TTTTTTTGAGAATGA-GCCA-GGTCTAAGTTGGGATGTGGGCCTT  995
      | || ||||||||||||||| |||| ||||||||||||||||||||||||
seq2  GTTCTTTTTTTTGAGAATGAGGCCAGGGTCTAAGTTGGGATGTGGGCCTT  998

seq1  GTTCCT-GGGGTATCAGGGCCTAG-GATTCC-ATGTAA-CTGC--TGCTG  1039
      |||||| ||||||||| ||||||| |||||| |||||| ||||  |||||
seq2  GTTCCTGGGGGTATCAAGGCCTAGTGATTCCTATGTAACCTGCTGTGCTG  1048

seq1  GATACT--CTTATGTGGGCCA-TCAG-TACAGCCTTGA--CCTGGAGCAT  1083
      |||| |   ||||||||| || |||| |||| | ||||  | ||||||||
seq2  GATAATTCTTTATGTGGGTCATTCAGTTACACCTTTGAACCTTGGAGCAT  1098

seq1  TTTTTTTTCAGGGGA-GGGGGGCTAATTATTGTAACTTTGGTTTATGTTG  1132
      ||||||||||||||| |||||||||  || || |||||||| |||||| |
seq2  TTTTTTTTCAGGGGAGGGGGGGCTA--TACTGGAACTTTGGGTTATGTAG  1146

seq1  TCAG  1136
      ||||
seq2  TCAG  1150

seq1: chr17_43662316_43662772
seq2: B6Ng01-132F10.g_68_524 (reverse)

seq1  TTATTGTATTGACTTTATAACATCTCACCTTCCCTGTGGAGTGAGACTGC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATTGACTTTATAACATCTCACCTTCCCTGTGGAGTGAGACTGC  50

seq1  ATTGCTCACTTTGGGACAAGTCACTAGCACCTAAATGTGTGCTTACCACA  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTGCTCACTTTGGGACAAGTCACTAGCACCTAAATGTGTGCTTACAACA  100

seq1  CAACGCCTGCTGGGTGTGTATTGCTTAGTGGGTGGTTGAGTAAAAGAACA  150
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAACACCTGCTGGGAGTGTATTGCTTAGTGGGTGGTTGAGTAAAAGAACA  150

seq1  ATGGAGATATTGTTATCCCTTCATCTACTCATTTGCATGGAATGAGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATATTGTTATCCCTTCATCTACTCATTTGCATGGAATGAGCAGA  200

seq1  AATGGCAGTTCCATAGAAACAGAAAGCACCCAGGAATTGGGAGTTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGTTCCATAGAAACAGAAAGCACCCAGGAATTGGGAGTTGTTAG  250

seq1  ATCTAGTGGGGAAACCCCCACCCAATCCCCGATTCGGCGTGCACCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGGGGAAACCCCCACCCAATCCCCGATTCGGCGTGCACCCAAAA  300

seq1  AATCACGAAGGACCATCTCTTGATGTAATTACATGAAGACGTTTAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGAAGGACCATCTCTTGATGTAATTACATGAAGACGTTTAATTAC  350

seq1  AGAGCTCCGGACCGACATGCATCCCACACAGGAGATAACAGATGTCGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCGGACCGACATGCATCCCACACAGGAGATAACAGATGTCGGCC  400

seq1  CCAAGGCTTGAAAGCTAGGTGTTTTTATGGGGTAAGGGGCTTAGGGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTTGAAAGCTAGGTGTTTTTATGGGGTAAGGGGCTTAGGGGTGT  450

seq1  GGAATTC  457
      |||||||
seq2  GGAATTC  457