BAC Information

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BAC

Clone NameB6Ng01-133M06
Chromosome17 (Build37)2 (Build37)
Map Location 19,771,681 - 19,772,81452,576,704 - 52,577,237
singlet/doubletsingletsinglet
Overlap geneEG224572
Upstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576
Downstream geneEG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M06.bB6Ng01-133M06.g
ACCDH934230DH934231
length1,119286
definitionDH934230|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M06, 5' end.DH934231|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,771,681 - 19,772,814)(52,576,704 - 52,577,237)
sequence
gaattccccatttatcaggatagtatatcaacttgctcttggcatggaat
gtagcctgtagtaaagatttctatctcagtgagattcccaggctctttct
gcaaatcaactgggctaatggccgttttattgtaatgcttaattagttac
tgaataggttaaactccttgctgtaatctgggatcttgtaacactgggag
aggctttagctatgtcagaattcaatcttaaaaggcacttataatagggt
aaagcttaatagagggcacgtggatccatacactagactaacgcgggaat
ggaaaattaattttatgggttagggggctcgccagactcaaggagggagt
ttccttgaaactcttttcctcatggccagcttccaagcttttgcctgtca
agctgactccaccagagtacatagcaacaaagctgtgattcagtatgcaa
gctgatatccctaaaaatgccagtggttaagaaaactgtgacatatgtac
acaatgaaaatttggttaagtgctaaaaatgaatctatgaaccatatatc
aggactcaatattccattccaaatataacagtgttttctggagagcaaca
cagcaccacaggcccaattaatgaccctgatatataccataaatcctttt
aaagtatgccaaatagccttcaactctacccttaccttagaagccacatt
ctggatctgtgggagacttcttggatcctggactccactgagactagtct
gcacaggtgagagtgtggactatagaagataacagcttctgggacaggca
ggaggaacagagcttctgaggcagccccatttttagggctccaaacatct
ggacaccctccctgccaaaggataggtatccaccttgcccatgaggacct
tgcctgagcattctgcgggagacatcttaattcctggactccactggact
agtctgcctcaggggagagttgtggactgcagaagctaaagcttctggga
cagtccttgtttcagcctcatcttctgccagaagcagtctgatgccagaa
tctgtaacttccctgaagagaaagctgctgcaagaaatgctctacactga
accagagaagctagtctcc
gaattctttatttacctctgagcccaatttcttaatggggtcatttgatt
ttctggagtcaatccttcttgaattatatatatatatatatatatatata
tatatatatatatatatatatatatatatcttgaattatatatatatata
tatcttgaattatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatgtatacgtgcatatgtgtatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19771681_19772814
seq2: B6Ng01-133M06.b_47_1165

seq1  GAATTCCCCATTTATCAGGATAGTATATCAACTTGCTCTTGGCATGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATTTATCAGGATAGTATATCAACTTGCTCTTGGCATGGAAT  50

seq1  GTAGCCTGTAGTAAAGATTTCTATCTCAGTGAGATTCCCAGGCTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGTAGTAAAGATTTCTATCTCAGTGAGATTCCCAGGCTCTTTCT  100

seq1  GCAAATCAACTGGGCTAATGGCCGTTTTATTGTAATGCTTAATTAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAACTGGGCTAATGGCCGTTTTATTGTAATGCTTAATTAGTTAC  150

seq1  TGAATAGGTTAAACTCCTTGCTGTAATCTGGGATCTTGTAACACTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTTAAACTCCTTGCTGTAATCTGGGATCTTGTAACACTGGGAG  200

seq1  AGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGGT  250

seq1  AAAGCTTAATAGAGGGCACGTGGATCCATACACTAGACTAACGCGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAATAGAGGGCACGTGGATCCATACACTAGACTAACGCGGGAAT  300

seq1  GGAAAATTAATTTTATGGGTTAGGGGGCTCGCCAGACTCAAGGAGGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTAATTTTATGGGTTAGGGGGCTCGCCAGACTCAAGGAGGGAGT  350

seq1  TTCCTTGAAACTCTTTTCCTCATGGCCAGCTTCCAAGCTTTTGCCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAAACTCTTTTCCTCATGGCCAGCTTCCAAGCTTTTGCCTGTCA  400

seq1  AGCTGACTCCACCAGAGTACATAGCAACAAAGCTGTGATTCAGTATGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTCCACCAGAGTACATAGCAACAAAGCTGTGATTCAGTATGCAA  450

seq1  GCTGATATCCCTAAAAATGCCAGTGGTTAAGAAAACTGTGACATATGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATATCCCTAAAAATGCCAGTGGTTAAGAAAACTGTGACATATGTAC  500

seq1  ACAATGAAAATTTGGTTAAGTGCTAAAAATGAATCTATGAACCATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAAATTTGGTTAAGTGCTAAAAATGAATCTATGAACCATATATC  550

seq1  AGGACTCAATATTCCATTCCAAATATAACAGTGTTTTCTGGAGAGCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAATATTCCATTCCAAATATAACAGTGTTTTCTGGAGAGCAACA  600

seq1  CAGCACCACAGGCCCAATTAATGACCCTGATATATACCATAAATCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACAGGCCCAATTAATGACCCTGATATATACCATAAATCCTTTT  650

seq1  AAAGTATGCCAAATAGCCTTCAACTCTACCCTTACCTTAGAAGCCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGCCAAATAGCCTTCAACTCTACCCTTACCTTAGAAGCCACATT  700

seq1  CTGGATCTGTGGGAGACTTCTTGGATCCTGGACTCCACTGAGACTAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTGTGGGAGACTTCTTGGATCCTGGACTCCACTGAGACTAGTCT  750

seq1  GCACAGGTGAGAGTGTGGACTATAGAAGATAACAGCTTCTGGGACAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGAGAGTGTGGACTATAGAAGATAACAGCTTCTGGGACAGGCA  800

seq1  GGAGGAACAGAGCTTCTGAGGCAGCCCCA-TTTTAGGGCTCCAAACATCT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGGAACAGAGCTTCTGAGGCAGCCCCATTTTTAGGGCTCCAAACATCT  850

seq1  GGACACCTTCCCTGCCAAAGGATAGGTATCCACCTTGCCCATGAGGACCT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCCTCCCTGCCAAAGGATAGGTATCCACCTTGCCCATGAGGACCT  900

seq1  TGCCTGAGCA-TCTGCGGGAGACATCTTAATTCCTGGACTCCACTGGACT  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGCATTCTGCGGGAGACATCTTAATTCCTGGACTCCACTGGACT  950

seq1  AGTCTG-CTCAGGTGAGAG-TGTGGACTGCAGAAGCTAAAGGCTTCTGGG  996
      |||||| |||||| ||||| |||||||||||||||||||| |||||||||
seq2  AGTCTGCCTCAGGGGAGAGTTGTGGACTGCAGAAGCTAAA-GCTTCTGGG  999

seq1  ACAGGTCCTGTTTCGGGCCTTCATCTTCTGCCAGGAGGCAAGTCTGAATG  1046
      ||||  | |||||| |  | |||||||||||||| ||   |||||| |||
seq2  ACAGTCCTTGTTTCAG--CCTCATCTTCTGCCAGAAG--CAGTCTG-ATG  1044

seq1  CCAGATATCTGTACACCTTCCCTGAAAGAGGAGAGCCTGCCTGCAGAGAG  1096
      ||||| ||||||  | |||||||| |||| || || ||| |||||   | 
seq2  CCAGA-ATCTGT--AACTTCCCTG-AAGA-GAAAG-CTG-CTGCAAGAAA  1087

seq1  TGCTCTAACCACTGAAACTCAGGAGAG-AGCTAGTCTCC  1134
      |||||||  ||||||| |     |||| |||||||||||
seq2  TGCTCTA--CACTGAACC-----AGAGAAGCTAGTCTCC  1119

seq1: chr2_52576704_52577237
seq2: B6Ng01-133M06.g_146_351 (reverse)

seq1  TATATATATATATACACACACAATTATATATATATATACACACAATTATA  50
                              |||||||||||||||||        |
seq2  ------------------------TATATATATATATACAC--------A  18

seq1  TATATACATATACACACACAATTATATATATATATATACACACACAATTA  100
      |||  || ||||||        ||||||||||||||||          ||
seq2  TATGCACGTATACA--------TATATATATATATATA----------TA  50

seq1  TATATATACATATACACACACAATTATATATATATATACACACACAATTA  150
      |||||||| |||||          ||||||||||||||          ||
seq2  TATATATATATATA----------TATATATATATATA----------TA  80

seq1  TATATATATATATATATACACACAATTATATATATACATATACACACACA  200
      ||||||||||||||||||        |||||||||| |||||        
seq2  TATATATATATATATATA--------TATATATATATATATA--------  114

seq1  ATTATATATATACATATACACACACAATTATATATATACATATACACACA  250
        |||||||||| | || ||     |  |||||||||| |||||   |  
seq2  --TATATATATATA-ATTCA-----AGATATATATATATATATA---ATT  153

seq1  CAATTATATATATATATATATACACACACAATTATATATATATATATACA  300
      |||  |||||||||||||||||          ||||||||||||||||  
seq2  CAA-GATATATATATATATATA----------TATATATATATATATA--  190

seq1  CACACAATTATATATATACATATACACACACAGTTATATATATACATATA  350
              |||||||||| |||||                          
seq2  --------TATATATATATATATA--------------------------  206

seq1  CACACACAGTTATATATATACATATACACACACAATTATATATATATATA  400
                                                        
seq2  --------------------------------------------------  206

seq1  TACACACACAATTATATATATACATATACACACACAGTTATATATATACA  450
                                                        
seq2  --------------------------------------------------  206

seq1  TATACACACACAGTTATATATATACATATACACACACAATTATATATATA  500
                                                        
seq2  --------------------------------------------------  206

seq1  TATATACACACACAATTATATATATATATATATA  534
                                        
seq2  ----------------------------------  206