BAC Information

Click to search

BAC

Clone NameB6Ng01-136I19
Chromosome17 (Build37)
Map Location 63,116,543 - 63,228,979
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I19.bB6Ng01-136I19.g
ACCDH936294DH936295
length1,2141,117
definitionDH936294|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I19, 5' end.DH936295|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,116,543 - 63,117,773)(63,227,844 - 63,228,979)
sequence
gaattctcaaatcagattacctgacaggcaatttcattatcttgctctgg
tacaccttcaaaaccttgagatagccagatagacatcatccattaatctg
tttggtcgccagtgtgcagctttgtaatcctatttgtgcagctacgagtg
ttcactattttcttaatattttcaggtctacattttaatattctgttttg
tgtattatggaagagccatgattgatatatatatatataatattatataa
tattactggacaacaaataagacttaaaagtcattagcttgaagacatgt
ataccctttatgtctcataggtcatctaaaaccaaatgttacacaccgtg
tcatgtaaaaaatgctctccacaacctgcgtttaattaccctgtaagaga
gaaaaggaatttgaagaacggataattgccttcaagttaaacgtatgaaa
cacacattcttctataataggagtttaaacagctaatctgattttgctgt
aactattcatttggtctcaagctaaattcaatggtaaagaactttgtaag
atttaaaaaagaaaaaagttagtgcaaagctccatttaaagaacatagta
aaaaaaaagagtgtttgttccttcaacttctttctcggcctccatttgga
agtctgggcgagaaggaaaatcttctggtggaatacaaacacaaaacctc
ctggtgccttctgtctggctgctagacagtcctcctcttaacctaggtag
tgaccaggcaagaggatcgggcactggaggcaaattgctcttactttctg
ctgctacactccccttctccatatagaacattcacttcctagtcccctac
accaaccactgccttctgggtcagagccaaaacctttgcctttgttggtg
gacatgcatcctgaactttgtagatatctctgtcaaggctggctagcctt
atcatgcatggtatctatctgcttggggctctggtcagccctctacctat
gaagcagtctctccagatccccttttccttctatagccctttcctttcct
taataaagcccaggctagactaaactggctcttggctggaggtgacctag
aattcatgattctctgtcctcacccccgaagttgtgggaataccggtatc
gatgctatgctacttctcacacattcatggttcgaattcattggaactat
tctctaataggtta
gaattcagaggttttcccggttgtcaagggtcagctgggatgaagagctg
atttctccaggaacgctcatgattgcccatcctagggagaaatcgcccca
ccctgttactccggccggcccagtcacacccaggtagcctaaagtgcttg
cctagctcatccttgaaagtttgcgttttttaataaaaagggtgtcgtgg
gggtgggaattagaatgggaagctatttcctctttgacacgccactagcc
actattaggaaaagagaaagagatgacgctctgccagagaatatgccttt
tattaaagctgacaagacaaatagaacaagctttccatttgcaatggtgt
taaaagcaagtctaattacgttgcttggggtaggcacctttggactttac
tggggcagcatgcatggaacatcagtttgtatttttaaacttaaatgatt
tatccaataaggtagagccagttatttgaatttgggacattttgctcttg
ttggtcactcaaaaataattaagtggaatctttctgtcctggtattcatt
cattagaacggtggctgtctcagtttgtcttagatttaagcagaaggaag
tatcagctagacccctcttcacctgtcaagctaggctcaggaagttcccg
gacattttatttcagttttatgcttttgctaccgttgtttggtttgagat
tagcaaattgatttttgtcataggtcatgttttttaatagatctgccctt
cctaaagaaaactctttctctcaggatgccattgtagctttgaacctgct
cagttataatctgtagactttaaaaaagaccaagaatagtcttaaagcag
catgttaatttgaagtctgtgaaaataacttactatttggccatgagcag
tttgatggcatcccaaagaaagaatcggggacctttctagatacatattt
atatctaccgattatgtagcctttatcgtggaatgctgctgcattaactt
actttaaaagaaggtagtgatagtagttttaatgcagattcataactgaa
tgtaattttttggcaagccctttagcgtctgagcaggtcttcagtcccga
tgtattatttctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63116543_63117773
seq2: B6Ng01-136I19.b_44_1257

seq1  GAATTCTCAAATCAGATTACCTGACAGGCAATTTCATTATCTTGCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATCAGATTACCTGACAGGCAATTTCATTATCTTGCTCTGG  50

seq1  TACACCTTCAAAACCTTGAGATAGCCAGATAGACATCATCCATTAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTCAAAACCTTGAGATAGCCAGATAGACATCATCCATTAATCTG  100

seq1  TTTGGTCGCCAGTGTGCAGCTTTGTAATCCTATTTGTGCAGCTACGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCGCCAGTGTGCAGCTTTGTAATCCTATTTGTGCAGCTACGAGTG  150

seq1  TTCACTATTTTCTTAATATTTTCAGGTCTACATTTTAATATTCTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATTTTCTTAATATTTTCAGGTCTACATTTTAATATTCTGTTTTG  200

seq1  TGTATTATGGAAGAGCCATGATTGATATATATATATATAATATTATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATGGAAGAGCCATGATTGATATATATATATATAATATTATATAA  250

seq1  TATTACTGGACAACAAATAAGACTTAAAAGTCATTAGCTTGAAGACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGGACAACAAATAAGACTTAAAAGTCATTAGCTTGAAGACATGT  300

seq1  ATACCCTTTATGTCTCATAGGTCATCTAAAACCAAATGTTACACACCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTTATGTCTCATAGGTCATCTAAAACCAAATGTTACACACCGTG  350

seq1  TCATGTAAAAAATGCTCTCCACAACCTGCGTTTAATTACCCTGTAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAAAAATGCTCTCCACAACCTGCGTTTAATTACCCTGTAAGAGA  400

seq1  GAAAAGGAATTTGAAGAACGGATAATTGCCTTCAAGTTAAACGTATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAATTTGAAGAACGGATAATTGCCTTCAAGTTAAACGTATGAAA  450

seq1  CACACATTCTTCTATAATAGGAGTTTAAACAGCTAATCTGATTTTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCTTCTATAATAGGAGTTTAAACAGCTAATCTGATTTTGCTGT  500

seq1  AACTATTCATTTGGTCTCAAGCTAAATTCAATGGTAAAGAACTTTGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCATTTGGTCTCAAGCTAAATTCAATGGTAAAGAACTTTGTAAG  550

seq1  ATTTAAAAAAGAAAAAAGTTAGTGCAAAGCTCCATTTAAAGAACATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAGAAAAAAGTTAGTGCAAAGCTCCATTTAAAGAACATAGTA  600

seq1  AAAAAAAAGAGTGTTTGTTCCTTCAACTTCTTTCTCGGCCTCCATTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGTGTTTGTTCCTTCAACTTCTTTCTCGGCCTCCATTTGGA  650

seq1  AGTCTGGGCGAGAAGGAAAATCTTCTGGTGGAATACAAACACAAAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGCGAGAAGGAAAATCTTCTGGTGGAATACAAACACAAAACCTC  700

seq1  CTGGTGCCTTCTGTCTGGCTGCTAGACAGTCCTCCTCTTAACCTAGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCTTCTGTCTGGCTGCTAGACAGTCCTCCTCTTAACCTAGGTAG  750

seq1  TGACCAGGCAAGAGGATCGGGCACTGGAGGCAAATTGCTCTTACTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGCAAGAGGATCGGGCACTGGAGGCAAATTGCTCTTACTTTCTG  800

seq1  CTGCTACACTCCCCTTCTCCATATAGAACATTCACTTCCTAGTCCCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACACTCCCCTTCTCCATATAGAACATTCACTTCCTAGTCCCCTAC  850

seq1  ACCAACCACTGCCTTCTGGGTCAGAGCCAAAACCTTTGCCTTTGTTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCACTGCCTTCTGGGTCAGAGCCAAAACCTTTGCCTTTGTTGGTG  900

seq1  GACATGCATCCTGAACTTTGTAGATAATCTCTGTCAAGGCTGGCTAGCCT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACATGCATCCTGAACTTTGTAGAT-ATCTCTGTCAAGGCTGGCTAGCCT  949

seq1  TATCATGCATGGTATCTTATCTGCTTGGGGCTCTGGTCAGCCCTCTACCT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCATGCATGGTATC-TATCTGCTTGGGGCTCTGGTCAGCCCTCTACCT  998

seq1  ATTGAGCAGTCTCTCCAGATCCCCTTTTCTCTCTATAGCCCTTTCCTTTC  1050
      ||  |||||||||||||||||||||||||  |||||||||||||||||||
seq2  ATGAAGCAGTCTCTCCAGATCCCCTTTTCCTTCTATAGCCCTTTCCTTTC  1048

seq1  CTTAATATAGCCCAGGCTAGACTTAAACTTGCCTCTTGGCTGAGGGTGAC  1100
      ||||||| |||||||||||||| ||||| || ||||||||||  ||||||
seq2  CTTAATAAAGCCCAGGCTAGAC-TAAAC-TGGCTCTTGGCTGGAGGTGAC  1096

seq1  CTAGAATTCATGATTCTCCTGT-CTCACACTCAGAAGTGTTGGGATCACA  1149
      ||||||||||||||||| |||| ||||| | | |||||  |||||  | |
seq2  CTAGAATTCATGATTCT-CTGTCCTCAC-CCCCGAAGTTGTGGGA--ATA  1142

seq1  AGTGTATCGATGCTATTGGCTACTTCCAACACATTTCATTGGTCCCGAAT  1199
         |||||||||||||  ||||||||  ||||| ||||| | |  |||||
seq2  CCGGTATCGATGCTAT--GCTACTTCTCACACA-TTCATGGTT--CGAAT  1187

seq1  TATCCATGTGAGAACTATTCTCAATAAGGTTA  1231
      |   ||| || ||||||||||| |  ||||||
seq2  T---CAT-TG-GAACTATTCTCTAATAGGTTA  1214

seq1: chr17_63227844_63228979
seq2: B6Ng01-136I19.g_69_1185 (reverse)

seq1  AAAAAAG-AATAATACATTTCGGGGCTGAAGACATGGCTCAGCAGCTAAA  49
      ||||||| |||||||||  ||||| |||||||| | ||||||  ||| ||
seq2  AAAAAAGAAATAATACA--TCGGGACTGAAGACCT-GCTCAGACGCT-AA  46

seq1  AAGGCTTGCCAAAAAAATTACATTTCAGTTAATGAATCTGCATTAAAACT  99
      | |||||||| ||||||||||| ||||||| |||||||||||||||||||
seq2  AGGGCTTGCC-AAAAAATTACA-TTCAGTT-ATGAATCTGCATTAAAACT  93

seq1  ACTTATCACTACCTACTTTTTAAAGTAAGTTTTAATGCAACAGCATACCA  149
      || ||||||||||| | ||||||||||||  |||||||| |||||| |||
seq2  AC-TATCACTACCTTC-TTTTAAAGTAAG--TTAATGCAGCAGCATTCCA  139

seq1  CGATAAAAGGCCTACATAAATCGGTAAGAATATTAAATATTGTATCTTAG  199
      |||||||  | |||||| ||||||||   ||| |||||| |||||| |||
seq2  CGATAAA--GGCTACAT-AATCGGTA--GATA-TAAATA-TGTATC-TAG  181

seq1  AAAGGTCCCCGATTCTTTCTTTGGGATGCCATCAAACTGCTCATGGCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCCCGATTCTTTCTTTGGGATGCCATCAAACTGCTCATGGCCAA  231

seq1  ATAGTAAGTTATTTTCACAGACTTCAAATTAACATGCTGCTTTAAGACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGTTATTTTCACAGACTTCAAATTAACATGCTGCTTTAAGACTA  281

seq1  TTCTTGGTCTTTTTTTAAAGTCTACAGATTATAACTGAGCAGGTTCAAAG  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTC-TTTTTTAAAGTCTACAGATTATAACTGAGCAGGTTCAAAG  330

seq1  CTACAATGGCATCCTGAGAGAAAGAGTTTTCTTTAGGAAGGGCAGATCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGGCATCCTGAGAGAAAGAGTTTTCTTTAGGAAGGGCAGATCTA  380

seq1  TTAAAAAACATGACCTATGACAAAAATCAATTTGCTAATCTCAAACCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACATGACCTATGACAAAAATCAATTTGCTAATCTCAAACCAAA  430

seq1  CAACGGTAGCAAAAGCATAAAACTGAAATAAAATGTCCGGGAACTTCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGTAGCAAAAGCATAAAACTGAAATAAAATGTCCGGGAACTTCCTG  480

seq1  AGCCTAGCTTGACAGGTGAAGAGGGGTCTAGCTGATACTTCCTTCTGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCTTGACAGGTGAAGAGGGGTCTAGCTGATACTTCCTTCTGCTT  530

seq1  AAATCTAAGACAAACTGAGACAGCCACCGTTCTAATGAATGAATACCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGACAAACTGAGACAGCCACCGTTCTAATGAATGAATACCAGG  580

seq1  ACAGAAAGATTCCACTTAATTATTTTTGAGTGACCAACAAGAGCAAAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGATTCCACTTAATTATTTTTGAGTGACCAACAAGAGCAAAATG  630

seq1  TCCCAAATTCAAATAACTGGCTCTACCTTATTGGATAAATCATTTAAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATTCAAATAACTGGCTCTACCTTATTGGATAAATCATTTAAGTT  680

seq1  TAAAAATACAAACTGATGTTCCATGCATGCTGCCCCAGTAAAGTCCAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACAAACTGATGTTCCATGCATGCTGCCCCAGTAAAGTCCAAAG  730

seq1  GTGCCTACCCCAAGCAACGTAATTAGACTTGCTTTTAACACCATTGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTACCCCAAGCAACGTAATTAGACTTGCTTTTAACACCATTGCAAA  780

seq1  TGGAAAGCTTGTTCTATTTGTCTTGTCAGCTTTAATAAAAGGCATATTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCTTGTTCTATTTGTCTTGTCAGCTTTAATAAAAGGCATATTCT  830

seq1  CTGGCAGAGCGTCATCTCTTTCTCTTTTCCTAATAGTGGCTAGTGGCGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAGCGTCATCTCTTTCTCTTTTCCTAATAGTGGCTAGTGGCGTG  880

seq1  TCAAAGAGGAAATAGCTTCCCATTCTAATTCCCACCCCCACGACACCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGGAAATAGCTTCCCATTCTAATTCCCACCCCCACGACACCCTT  930

seq1  TTTATTAAAAAACGCAAACTTTCAAGGATGAGCTAGGCAAGCACTTTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAAAACGCAAACTTTCAAGGATGAGCTAGGCAAGCACTTTAGG  980

seq1  CTACCTGGGTGTGACTGGGCCGGCCGGAGTAACAGGGTGGGGCGATTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGGTGTGACTGGGCCGGCCGGAGTAACAGGGTGGGGCGATTTCT  1030

seq1  CCCTAGGATGGGCAATCATGAGCGTTCCTGGAGAAATCAGCTCTTCATCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGATGGGCAATCATGAGCGTTCCTGGAGAAATCAGCTCTTCATCC  1080

seq1  CAGCTGACCCTTGACAACCGGGAAAACCTCTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACCCTTGACAACCGGGAAAACCTCTGAATTC  1117