BAC Information

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BAC

Clone NameB6Ng01-137L04
Chromosome17 (Build37)
Map Location 78,869,738 - 78,966,044
singlet/doubletdoublet
Overlap geneHdac1-ps, Vit
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888
Downstream geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137L04.bB6Ng01-137L04.g
ACCDH937145DH937146
length982947
definitionDH937145|Mus musculus domesticus DNA, BAC clone: B6Ng01-137L04, 5' end.DH937146|Mus musculus domesticus DNA, BAC clone: B6Ng01-137L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,869,738 - 78,870,536)(78,965,091 - 78,966,044)
sequence
gaattctttgtggcaatgtgcaatgacttccttgggttgcttttcttgca
attgattgttgagtcaaaggtattcagttattacatatctcaggttatta
tatatctcaggttccctctctgtctctgtctcgctctgtctttgtctctc
tctgtctctctctctctgtgcctctctctgtctttgtctctctctgtctc
tctctctctgtgtctctctctctggtatatgcctgcaggttcacatgtga
ctgcaggtgtgttgcacacgtatacacatgtgggtatatacaagggctga
tcttacacacgttctcacgcccggccaggaaagaacacaacaaaccagaa
tcttctgcggcaaaactttattgcttacatctttaggagccagagctccg
gcgcgccaaagcgcagagcgcgctctattgtttacatctttaggagcaag
cgagcaggcgccagagccagcgagagaaaatggcggaaaacccgtcccct
ttaaggaggagttatccttcgcttaggacgcatcactccctgattggctg
cagcccatggccgagctgacgttcacgggaaaggcagagtacaagtagtc
gtaaaatacccttggcacatgcgcagattatttgtttaccacttagaaca
caggatgtcagcgccatcttgtgacggcgaatgtgggggcggctcccaac
atctcccccttttcttttaataagagcaaataggccacccatattaatga
gagtggagatagaggtcaaatccccagtgtgtaggtaaaggagccgtaca
cataacctcctcccaggctcatcacccagaggggtcctggtctggtcccg
tgttgtttttcctgggggaaggacacttgaacactcaaccttcttgaaag
atgacatgtctccctagaataggctcattttatgccgcagagcccttcta
ttgcagtgcttagccgtgcaactctctcggct
gaattcactatgaagcctcacagtttccattccaaatgactgttcttgct
ggacagatgcttacagaactgtaaagttttgggatctggctaattttggt
acatgattttgctcttctatttgcattttttaaaaaaaaaattaatagaa
ctttagctgggcggtagtggcacatacctttaatcccagcacttgggagg
cagaggcaggcagatttctgagtttgaggccagcctggtctacaaagtga
attccaggacagccagggttatacagagaaaccctgtctcgaaaaaccaa
aaataaaataaaagaaaaaataaaaaaggtgggggataagtcagtcagtt
tttctaagagtgataggaaaggagacgcagggtcacacgtgacttctcgg
acaaatttgtaaatggaatgcaggaggctcagttagatttgtacactttt
gctggctaattgcagcaaccctgcaccagacgtaccccaaagcgctttga
tcactgggtgcggaataggtcatagccacccacctgtgaattgcggcgcc
acacacgctggagtaagacgcgtagacgccagtgccgtaaacatggtatt
tggggtcctggcagcccgctggacatttcaccatgaactcaggattgatg
atctttccagctttgacatcgcagttgatctgaggcacagctggggaaca
cagaatgaggtcaaaattacccgtgctgtgtcaggacacatatgaggtga
cgctgccaggctctaagcgttcatttacttaatcttaaaagtctgaacct
gaactggccccgtgtccctttctttccatacaacgaggctaaagacgtag
caaggacatcctcagaccttaaggacgagggcatccatgcgtctacgcgc
taaaaggggggggtgggggaataaggctgaccccgtcttgttggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78869738_78870536
seq2: B6Ng01-137L04.b_48_846

seq1  GAATTCTTTGTGGCAATGTGCAATGACTTCCTTGGGTTGCTTTTCTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGCAATGTGCAATGACTTCCTTGGGTTGCTTTTCTTGCA  50

seq1  ATTGATTGTTGAGTCAAAGGTATTCAGTTATTACATATCTCAGGTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGTTGAGTCAAAGGTATTCAGTTATTACATATCTCAGGTTATTA  100

seq1  TATATCTCAGGTTCCCTCTCTGTCTCTGTCTCGCTCTGTCTTTGTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCAGGTTCCCTCTCTGTCTCTGTCTCGCTCTGTCTTTGTCTCTC  150

seq1  TCTGTCTCTCTCTCTCTGTGCCTCTCTCTGTCTTTGTCTCTCTCTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCTCTGTGCCTCTCTCTGTCTTTGTCTCTCTCTGTCTC  200

seq1  TCTCTCTCTGTGTCTCTCTCTCTGGTATATGCCTGCAGGTTCACATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTGTCTCTCTCTCTGGTATATGCCTGCAGGTTCACATGTGA  250

seq1  CTGCAGGTGTGTTGCACACGTATACACATGTGGGTATATACAAGGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTGTGTTGCACACGTATACACATGTGGGTATATACAAGGGCTGA  300

seq1  TCTTACACACGTTCTCACGCCCGGCCAGGAAAGAACACAACAAACCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACACGTTCTCACGCCCGGCCAGGAAAGAACACAACAAACCAGAA  350

seq1  TCTTCTGCGGCAAAACTTTATTGCTTACATCTTTAGGAGCCAGAGCTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCGGCAAAACTTTATTGCTTACATCTTTAGGAGCCAGAGCTCCG  400

seq1  GCGCGCCAAAGCGCAGAGCGCGCTCTATTGTTTACATCTTTAGGAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCCAAAGCGCAGAGCGCGCTCTATTGTTTACATCTTTAGGAGCAAG  450

seq1  CGAGCAGGCGCCAGAGCCAGCGAGAGAAAATGGCGGAAAACCCGTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAGGCGCCAGAGCCAGCGAGAGAAAATGGCGGAAAACCCGTCCCCT  500

seq1  TTAAGGAGGAGTTATCCTTCGCTTAGGACGCATCACTCCCTGATTGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGGAGTTATCCTTCGCTTAGGACGCATCACTCCCTGATTGGCTG  550

seq1  CAGCCCATGGCCGAGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATGGCCGAGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTC  600

seq1  GTAAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACA  650

seq1  CAGGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAAC  700

seq1  ATCTCCCCCTTTTCTTTTAATAAGAGCAAATAGGCCACCCATATTAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCCTTTTCTTTTAATAAGAGCAAATAGGCCACCCATATTAATGA  750

seq1  GAGTGGAGATAGAGGTCAAATCCCCAGTGTGTAGGTAAAGGAGCCGTAC  799
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGATAGAGGTCAAATCCCCAGTGTGTAGGTAAAGGAGCCGTAC  799

seq1: chr17_78965091_78966044
seq2: B6Ng01-137L04.g_67_1013 (reverse)

seq1  TTTCCAAACAAGAACAGGGGTCAGCCTTTATTCCCCCCACCCCCCCCTTT  50
      ||||| |||||||   |||||||||| ||||| |||||||||||||||||
seq2  TTTCC-AACAAGA--CGGGGTCAGCC-TTATT-CCCCCACCCCCCCCTTT  45

seq1  TAGCGCGTTAGACGCAATGGATGCCCTCGTCCTTAAGGTCTGAGGAATGT  100
      ||||||| ||||||| ||||||||||||||||||||||||||||| ||||
seq2  TAGCGCG-TAGACGC-ATGGATGCCCTCGTCCTTAAGGTCTGAGG-ATGT  92

seq1  CCTTGCTACGTCTTTAGCCTCGTTGTATGGAAAGGAAGGGACACGGGGCC  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTTGCTACGTCTTTAGCCTCGTTGTATGGAAAGAAAGGGACACGGGGCC  142

seq1  AGTTCAGGTTCAGACTTTTAAGATTAAGTAAATGAACGCTTAGAGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGTTCAGACTTTTAAGATTAAGTAAATGAACGCTTAGAGCCTGG  192

seq1  CAGCGTCACCTCATATGTGTCCTGACACAGCACGGGTAATTTTGACCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCACCTCATATGTGTCCTGACACAGCACGGGTAATTTTGACCTCA  242

seq1  TTCTGTGTT-CCCAGCTGTGCCTCAGATCAACTGCGATGTCAAAGCTGGA  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTTCCCCAGCTGTGCCTCAGATCAACTGCGATGTCAAAGCTGGA  292

seq1  AAGATCATCAATCCTGAGTTCATGGTGAAATGTCCAGCGGGCTGCCAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATCAATCCTGAGTTCATGGTGAAATGTCCAGCGGGCTGCCAGGA  342

seq1  CCCCAAATACCATGTTTACGGCACTGGCGTCTACGCGTCTTACTCCAGCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATACCATGTTTACGGCACTGGCGTCTACGCGTCTTACTCCAGCG  392

seq1  TGTGTGGCGCCGCAATTCACAGGTGGGTGGCTATGACCTATTCCGCACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCGCCGCAATTCACAGGTGGGTGGCTATGACCTATTCCGCACCC  442

seq1  AGTGATCAAAGCGCTTTGGGGTACGTCTGGTGCAGGGTTGCTGCAATTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAAAGCGCTTTGGGGTACGTCTGGTGCAGGGTTGCTGCAATTAG  492

seq1  CCAGCAAAAGTGTACAAATCTAACTGAGCCTCCTGCATTCCATTTACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAAGTGTACAAATCTAACTGAGCCTCCTGCATTCCATTTACAAA  542

seq1  TTTGTCCGAGAAGTCACGTGTGACCCTGCGTCTCCTTTCCTATCACTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCGAGAAGTCACGTGTGACCCTGCGTCTCCTTTCCTATCACTCTT  592

seq1  AGAAAAACTGACTGACTTATCCCCCACCTTTTTTATTTTTTCTTTTATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTGACTGACTTATCCCCCACCTTTTTTATTTTTTCTTTTATTT  642

seq1  TATTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAACCCTGGCTGTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAACCCTGGCTGTCCT  692

seq1  GGAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGC  742

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGTATGTGCCACTACCGCCCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGGATTAAAGGTATGTGCCACTACCGCCCAGC  792

seq1  TAAAGTTCTATTAATTTTTTTTTTAAAAAATGCAAATAGAAGAGCAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCTATTAATTTTTTTTTTAAAAAATGCAAATAGAAGAGCAAAAT  842

seq1  CATGTACCAAAATTAGCCAGATCCCAAAACTTTACAGTTCTGTAAGCATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCAAAATTAGCCAGATCCCAAAACTTTACAGTTCTGTAAGCATC  892

seq1  TGTCCAGCAAGAACAGTCATTTGGAATGGAAACTGTGAGGCTTCATAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCAAGAACAGTCATTTGGAATGGAAACTGTGAGGCTTCATAGTG  942

seq1  AATTC  954
      |||||
seq2  AATTC  947