BAC Information

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BAC

Clone NameB6Ng01-139C08
Chromosome17 (Build37)
Map Location 26,608,695 - 26,609,666
singlet/doubletsinglet
Overlap genenone
Upstream geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik
Downstream geneDusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C08.bB6Ng01-139C08.g
ACCDH938208DH938209
length1,122782
definitionDH938208|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C08, 5' end.DH938209|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattctgacctggaactcacggagatctgcctgcctctgcttccc
tggtgctggaattacaggcgtgcggcaccactggggttctttatggagca
cattagctcatgtctgtcgaggcctgagtaccaggtatactcattaatct
aagatttattttatgtataacacaggtgtctcacctgcatgtatatatgt
gattatgtgcaagccttgtgcctggggatatgcctggggagctgagaaga
ggctgtcagatcccttgaaacaggagttaggatggttgcgaacaatcatg
tgggcaattgggaactgaacccaggtcctctgcaaaagcagcaagtgctc
ttaaccactgggccatcgctccagctcctaaccactgagccatctctcca
tcccctaaccactgagccatctctccatcccctaaccactgagccatctc
tccagctcctaaccactgagccacctctccagcccctaaccactgagcca
tctctccagttcctaaccactgagccaaccttccagctcctaactactca
gccatctctccagcccctaaccactgagccaaccctccagctcctaacca
ctgagccaaccctccagctcctaaccactgagccatctctccatccccta
accactgagccatctctccagctcctaaccactgagccatctccccagct
cctaaccactgagccaaccctttagcccaactttttttttttttttttaa
attttcatggatgggatgtgattctagtttcccaccaggtggggccatga
cacatccttttgaggctcattcgcttcatagccccaattaacaacaaagg
ttaagtctgaatgaagtttcccacggatgtagtgggcaagattagcaaaa
ccctatgatgtaaaccggtctttcgcttttgacctctgctggcaccgcac
cccgcagacgccattccctcgccacccactcccttacacacatttgatgt
actaagattttgcaacaacccatgaaacaggaaacttattatttctgttt
tgaggaaagggtcaagatacagagaggtcaattactgtgtccaaattgca
ttcagttctgatgcacttgaat
gaattccaatggcaagactgcatcgcggaggtcggaggagaaggaggctg
gcgagatctgaatctggctcaggcgctgtaaatagtctgacaaatgttcg
gcaccgcctaaattaccctttatatttgctgatacaactcatcttttgta
gttaaaatttctattgtttggtcctagctgtgagtttctagagttgttca
gagctgcttctgtgtttggggttacattgtataggaacaaataaatctgg
cggctgcctcctgacagctgtgttggggtatctgctgtcctctagagtag
aggcacttcactaggaccctgcacctgtggagaaaaggctggtgctgcca
ttaccttaagaaactgaccaaatgtctgaccaatttgatttttggacctc
ccacccccttaactgaaccagattatgtggcttcgtttcctggttacgcc
gctcttagctgctatggtctcgttcattcagaccataagcaggtctgggg
atgggaaaagtggcatatacacgtattttcctaggagaactgttctgtga
acctagctaagtcactaatgagttcatctgtactaatgaataagattgat
accgcaataaaatcttgaggaagtaagttaggcaggatcgggaggtatct
cagacggtaacgttaccctgacatgtgttgtcaagaccatgccttagaca
ggaaccaattagatctgaaggattctcctcatgttggagagttaacattt
tagagactatggtgtaattaaaccccctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26608695_26609666
seq2: B6Ng01-139C08.b_204_1168 (reverse)

seq1  ATTCAAAGTGCATCCAGACTGGAATGCAATTTGGGGCCAGTAATTGACCT  50
      |||| |||||||| ||||   |||||||||||||   |||||||||||||
seq2  ATTC-AAGTGCAT-CAGAACTGAATGCAATTTGGACACAGTAATTGACCT  48

seq1  CTCTGTATCTTGACCCTTTCCTTCAAAACAGAAATAATAAGTTTCCTGTT  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTGTATCTTGACCCTTTCC-TCAAAACAGAAATAATAAGTTTCCTGTT  97

seq1  TCATGGGTTTGTTGCAAAAATCTAAGTACATCAAATGTGTGTAAGGGAGG  150
      ||||||| ||||||| ||||||| |||||||||||||||||||||||| |
seq2  TCATGGG-TTGTTGC-AAAATCTTAGTACATCAAATGTGTGTAAGGGA-G  144

seq1  TGGGTGGCGGAGGGAATGGCGTCTGCGGGGTGCGGTGCCAGGCAGAGGGT  200
      |||||||| ||||||||||||||||||||||||||||||| |||||||  
seq2  TGGGTGGC-GAGGGAATGGCGTCTGCGGGGTGCGGTGCCA-GCAGAGGTC  192

seq1  CAAAGCCGAAGACCGGTTTACATCATAGGGTTTTGCTAATCTTTGCCACT  250
       |||||  |||||||||||||||||||||||||||||||||||  |||||
seq2  AAAAGCGAAAGACCGGTTTACATCATAGGGTTTTGCTAATCTTGCCCACT  242

seq1  ACATCCGTGGGACACTTCATTCAGACTTAACCTTTGTTGTTAATTGGGGC  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACATCCGTGGGAAACTTCATTCAGACTTAACCTTTGTTGTTAATTGGGGC  292

seq1  TATGAAGCGAATGAGCCTCAAAAGGATGTGTCATGGCCCCACCTGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCGAATGAGCCTCAAAAGGATGTGTCATGGCCCCACCTGGTGGG  342

seq1  AAACTAGAATCACATCCCATCCATGAAAATTT-AAAAAAAAAAAAAAAAG  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACTAGAATCACATCCCATCCATGAAAATTTAAAAAAAAAAAAAAAAAG  392

seq1  TTGGGCTAAAGGGTTGGCTCAGTGGTTAGGAGCTGGGGAGATGGCTCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAAAGGGTTGGCTCAGTGGTTAGGAGCTGGGGAGATGGCTCAGT  442

seq1  GGTTAGGAGCTGGAGAGATGGCTCAGTGGTTAGGGGATGGAGAGATGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAGCTGGAGAGATGGCTCAGTGGTTAGGGGATGGAGAGATGGCT  492

seq1  CAGTGGTTAGGAGCTGGAGGGTTGGCTCAGTGGTTAGGAGCTGGAGGGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAGGAGCTGGAGGGTTGGCTCAGTGGTTAGGAGCTGGAGGGTT  542

seq1  GGCTCAGTGGTTAGGGGCTGGAGAGATGGCTGAGTAGTTAGGAGCTGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGGTTAGGGGCTGGAGAGATGGCTGAGTAGTTAGGAGCTGGAA  592

seq1  GGTTGGCTCAGTGGTTAGGAACTGGAGAGATGGCTCAGTGGTTAGGGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTCAGTGGTTAGGAACTGGAGAGATGGCTCAGTGGTTAGGGGCT  642

seq1  GGAGAGGTGGCTCAGTGGTTAGGAGCTGGAGAGATGGCTCAGTGGTTAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGGCTCAGTGGTTAGGAGCTGGAGAGATGGCTCAGTGGTTAGG  692

seq1  GGATGGAGAGATGGCTCAGTGGTTAGGGGATGGAGAGATGGCTCAGTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGAGATGGCTCAGTGGTTAGGGGATGGAGAGATGGCTCAGTGGT  742

seq1  TAGGAGCTGGAGCGATGGCCCAGTGGTTAAGAGCACTTGCTGCTTTTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTGGAGCGATGGCCCAGTGGTTAAGAGCACTTGCTGCTTTTGCA  792

seq1  GAGGACCTGGGTTCAGTTCCCAATTGCCCACATGATTGTTCGCAACCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTGGGTTCAGTTCCCAATTGCCCACATGATTGTTCGCAACCATC  842

seq1  CTAACTCCTGTTTCAAGGGATCTGACAGCCTCTTCTCAGCTCCCCAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCTGTTTCAAGGGATCTGACAGCCTCTTCTCAGCTCCCCAGGCA  892

seq1  TATCCCCAGGCACAAGGCTTGCACATAATCACATATATACATGCAGGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCAGGCACAAGGCTTGCACATAATCACATATATACATGCAGGTGA  942

seq1  GACACCTGTGTTATACATAAAAT  972
      |||||||||||||||||||||||
seq2  GACACCTGTGTTATACATAAAAT  965