BAC Information

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BAC

Clone NameB6Ng01-139D12
Chromosome17 (Build37)
Map Location 47,843,882 - 47,970,823
singlet/doubletdoublet
Overlap genePgc, LOC100043405, Tcfeb, Mdfi
Upstream genePex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3
Downstream geneFoxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D12.bB6Ng01-139D12.g
ACCDH938260DH938261
length914945
definitionDH938260|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D12, 5' end.DH938261|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,843,882 - 47,844,735)(47,969,874 - 47,970,823)
sequence
gaattccaggaccttgccttgttacctacccaagctgtccaccacctaca
ggtccaccctgcttgaacactcttgtgcgtccttggggacagcgccttct
atccatgggaggggcccaggcaggagtgtgggaggcttaacctcacctgc
cctgatttctccttcttgtgggtggaaggacctcccggggcagggcaggt
taaaggatcctgagtgatggctgcttcaacaagtgctttaaagtgaaatc
ctacccagaggtggggcagggtcatgacagatgctgccatgacggtctgc
agcagagaggagctgggccccgatggacagggctctgtgatgccgcagcc
caggagtgtcagttgtttgcctcactgctgtgacaaagatacctgagcac
cgcaggctatggaagggctgactgggcgcacagttcatcgtggaaggaag
acatgagggtgggaatgtggggcagccgcccctatggcgtccattgtgaa
gagcaggggctgaggggggggagctcagcttgcaacctcctgtctacgac
cccagcccatggagctgcccacctttatggtgggtcttcctatctcagtt
aaacctaatctagaaagctgctctcacacaggcgtcccccaaaagcttgc
tctcctaggtggtcttaggttttgtcaagttggcagtcacggttaaccag
cagagctgggcgatagcttggcggttacacagccggctcatgcagagagg
ccaagttcagtacccagcatccatctctgtcagctcacacaggaccgtaa
cttcagctccaggggatccagcaccttcttccccacccctgtgggcacac
agacgtgtggctagacacatgcatgttgcagaaattaaagcaaatattta
tatacaaaaattgg
gaattcccgtgtccaactggcactggcggggatggcgggccttgggggtg
tttttggctgctatgggaccaggaggctgatgcgacaccagcccagcttc
ccggagagccagtttctgacggactgagcccctaactccaggcacccagc
tccgaaatggaaatccaggacttgaacaaagggcaccaaaagaactagat
tgctctgatcttcgggacaacgcgatttgagggctactactattcagacc
attgtcccaggatgattgtgacttctttcttttgatattctggaaacttt
tacaaagtttaagaccgaaggaaaacatgcggccccttgtgcaagccgcg
aggttctcccggccctgggtaggcggagatctggggagactggagatcct
ggctctgagcgaggggaggaaaccagacgagctggcttcctgtgggggct
caggcctcggacgccccgcggacagacgtgtcctgccctggcagcagcga
gtcccgcacgggggaggggacgcctgaggggggctgagacagcgaggagg
gggcggggacggggtgggccagggaagaggggaggagcgagggggctgga
acgagagaaggaagaaggaaggggcgatcggtgggtgcgagctggcgctg
gaatgggagccaagagcgagtgagcggggagggggcgcgggcgacaccca
ggtgtcgcatggcggggtccacgaggtgacctgcctaggtcagcagcgcg
cagcttgcacgagtatgcgctagggcacccactccgtttccccacgcaca
cgcgagggaggcctgccccgcccgctgagcgctgttttctccagttccag
gccgatgtcccaggtgagcagtcagtgtccttctcgctgcgacgcgctca
tggagtcccagcgctgcctggacccagtaggagcgtgaatggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47843882_47844735
seq2: B6Ng01-139D12.b_46_900

seq1  GAATTCCAGGACCTTGCCTTGTTACCTACCCAAGCTGTCCACCACCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCTTGCCTTGTTACCTACCCAAGCTGTCCACCACCTACA  50

seq1  GGTCCACCCTGCTTGAACACTCTTGTGCGTCCTTGGGGACAGCGCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACCCTGCTTGAACACTCTTGTGCGTCCTTGGGGACAGCGCCTTCT  100

seq1  ATCCATGGGAGGGGCCCAGGCAGGAGTGTGGGAGGCTTAACCTCACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGGAGGGGCCCAGGCAGGAGTGTGGGAGGCTTAACCTCACCTGC  150

seq1  CCTGATTTCTCCTTCTTGTGGGTGGAAGGACCTCCCGGGGCAGGGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTCTCCTTCTTGTGGGTGGAAGGACCTCCCGGGGCAGGGCAGGT  200

seq1  TAAAGGATCCTGAGTGATGGCTGCTTCAACAAGTGCTTTAAAGTGAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATCCTGAGTGATGGCTGCTTCAACAAGTGCTTTAAAGTGAAATC  250

seq1  CTACCCAGAGGTGGGGCAGGGTCATGACAGATGCTGCCATGACGGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGAGGTGGGGCAGGGTCATGACAGATGCTGCCATGACGGTCTGC  300

seq1  AGCAGAGAGGAGCTGGGCCCCGATGGACAGGGCTCTGTGATGCCGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGGAGCTGGGCCCCGATGGACAGGGCTCTGTGATGCCGCAGCC  350

seq1  CAGGAGTGTCAGTTGTTTGCCTCACTGCTGTGACAAAGATACCTGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTCAGTTGTTTGCCTCACTGCTGTGACAAAGATACCTGAGCAC  400

seq1  CGCAGGCTATGGAAGGGCTGACTGGGCGCACAGTTCATCGTGGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCTATGGAAGGGCTGACTGGGCGCACAGTTCATCGTGGAAGGAAG  450

seq1  ACATGAGGGTGGGAATGTGGGGCAGCCGCCCCTATGGCGTCCATTGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGGTGGGAATGTGGGGCAGCCGCCCCTATGGCGTCCATTGTGAA  500

seq1  GAGCAGGGGCTGAGGGGGGGGAGCTCAGCTTGCAACCTCCTGTCTACGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGGCTGAGGGGGGGGAGCTCAGCTTGCAACCTCCTGTCTACGAC  550

seq1  CCCAGCCCATGGAGCTGCCCACCTTTATGGTGGGTCTTCCTATCTCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCATGGAGCTGCCCACCTTTATGGTGGGTCTTCCTATCTCAGTT  600

seq1  AAACCTAATCTAGAAAGCTGCTCTCACACAGGCGTCCCCC-AAAGCTTGC  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACCTAATCTAGAAAGCTGCTCTCACACAGGCGTCCCCCAAAAGCTTGC  650

seq1  TCTCCTAGGTGGTCTTAGGTTTTGTCAAGTTGGCAGTCACGGTTAACCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGGTGGTCTTAGGTTTTGTCAAGTTGGCAGTCACGGTTAACCAG  700

seq1  CAGAGCTGGGCGATAGCTTGGCGGTTACACAGCCGGCTCATGCAGAGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGGCGATAGCTTGGCGGTTACACAGCCGGCTCATGCAGAGAGG  750

seq1  CCAAGTTCAGTACCCAGCATCCATCTCTGTCAGCTCACACAGGACCGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCAGTACCCAGCATCCATCTCTGTCAGCTCACACAGGACCGTAA  800

seq1  CTTCAGCTCCAGGGGATCCAGCACCTTCTTCCCCACCCCTGTGGGCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTCCAGGGGATCCAGCACCTTCTTCCCCACCCCTGTGGGCACAC  850

seq1  AGACG  854
      |||||
seq2  AGACG  855

seq1: chr17_47969874_47970823
seq2: B6Ng01-139D12.g_66_1010 (reverse)

seq1  TCTCCATTCCCGCTCCTACCTGGGTCCAGGGCAGCGCTGGGGACTCCATG  50
      ||||||||| |||||||| ||||||||| ||||||||| |||||||||||
seq2  TCTCCATTCACGCTCCTA-CTGGGTCCA-GGCAGCGCT-GGGACTCCATG  47

seq1  AGGCGCGTCGCAGCGAGAAGGGCACTGACCGCTCACCTGGGACATCGGCC  100
      | ||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  A-GCGCGTCGCAGCGAGAAGGACACTGACTGCTCACCTGGGACATCGGCC  96

seq1  TGGGACCTGGAGAAAACAGCGCTCAGCGGGCGGGGCAGGCCTCCCTCGCG  150
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GGAACTGGAGAAAACAGCGCTCAGCGGGCGGGGCAGGCCTCCCTCGCG  145

seq1  TGTGCGTGGGGAAACGGAGTGGGTGCCCTAGCGCATACTCGTGCAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGGGGAAACGGAGTGGGTGCCCTAGCGCATACTCGTGCAAGCTG  195

seq1  CGCGCTGCTGGCCTAGGCAGGTCACCTCGTGGACCCCGCCATGCGACACC  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTGCTGACCTAGGCAGGTCACCTCGTGGACCCCGCCATGCGACACC  245

seq1  TGGGTGTCGCCCGCGCCCCCTCCCCGCTCACTCGCTCTTGGCTCCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCGCCCGCGCCCCCTCCCCGCTCACTCGCTCTTGGCTCCCATTC  295

seq1  CAGCGCCAGCTCGCACCCACCGATCGCCCCTTCCTTCTTCCTTCTCTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCAGCTCGCACCCACCGATCGCCCCTTCCTTCTTCCTTCTCTCGT  345

seq1  TCCAGCCCCCTCGCTCCTCCCCTCTTCCCTGGCCCACCCCGTCCCCGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCCTCGCTCCTCCCCTCTTCCCTGGCCCACCCCGTCCCCGCCC  395

seq1  CCTCCTCGCTGTCTCAGCCCCCCTCAGGCGTCCCCTCCCCCGTGCGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCGCTGTCTCAGCCCCCCTCAGGCGTCCCCTCCCCCGTGCGGGAC  445

seq1  TCGCTGCTGCCAGGGCAGGACACGTCTGTCCGCGGGGCGTCCGAGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCTGCCAGGGCAGGACACGTCTGTCCGCGGGGCGTCCGAGGCCTG  495

seq1  AGCCCCCACAGGAAGCCAGCTCGTCTGGTTTCCTCCCCTCGCTCAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCACAGGAAGCCAGCTCGTCTGGTTTCCTCCCCTCGCTCAGAGCC  545

seq1  AGGATCTCCAGTCTCCCCAGATCTCCGCCTACCCAGGGCCGGGAGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTCCAGTCTCCCCAGATCTCCGCCTACCCAGGGCCGGGAGAACCT  595

seq1  CGCGGCTTGCACAAGGGGCCGCATGTTTTCCTTCGGTCTTAAACTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCTTGCACAAGGGGCCGCATGTTTTCCTTCGGTCTTAAACTTTGTA  645

seq1  AAAGTTTCCAGAATATCAAAAGAAAGAAGTCACAATCATCCTGGGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCCAGAATATCAAAAGAAAGAAGTCACAATCATCCTGGGACAAT  695

seq1  GGTCTGAATAGTAGTAGCCCTCAAATCGCGTTGTCCCGAAGATCAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAATAGTAGTAGCCCTCAAATCGCGTTGTCCCGAAGATCAGAGCA  745

seq1  ATCTAGTTCTTTTGGTGCCCTTTGTTCAAGTCCTGGATTTCCATTTCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTCTTTTGGTGCCCTTTGTTCAAGTCCTGGATTTCCATTTCGGA  795

seq1  GCTGGGTGCCTGGAGTTAGGGGCTCAGTCCGTCAGAAACTGGCTCTCCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGCCTGGAGTTAGGGGCTCAGTCCGTCAGAAACTGGCTCTCCGG  845

seq1  GAAGCTGGGCTGGTGTCGCATCAGCCTCCTGGTCCCATAGCAGCCAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGGCTGGTGTCGCATCAGCCTCCTGGTCCCATAGCAGCCAAAAA  895

seq1  CACCCCCAAGGCCCGCCATCCCCGCCAGTGCCAGTTGGACACGGGAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAAGGCCCGCCATCCCCGCCAGTGCCAGTTGGACACGGGAATTC  945