BAC Information

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BAC

Clone NameB6Ng01-139I03
Chromosome17 (Build37)
Map Location 14,047,444 - 14,209,556
singlet/doubletdoublet
Overlap geneEG635895, EG664821, EG664831
Upstream geneMas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464
Downstream gene4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I03.bB6Ng01-139I03.g
ACCDH938472DH938473
length1,1721,058
definitionDH938472|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I03, 5' end.DH938473|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,208,362 - 14,209,556)(14,047,444 - 14,048,510)
sequence
gaattcataggtctcagtcaccttgctaattccagagaaaggaggccaat
aaaattcttctgcttctagggtgccttctttcacttatgccatactgaat
tggtttttatgctggtccactgtggacactggatgggttttgtgtatttc
caagtagagattctgttaagtagaggagtctactaccatgaacatccaca
ggtggggtgaaggcactatgcacaaagtcctagctggatctcaggtagac
tccgaagagctcaagacttagccctgcaagctgcaaataaaaacacctaa
agaaaatcaggcctgagtcagacagatacttgaatgtatttcacctctaa
aatccagtttttaatgggatgtgtatagaaaaatctgaaagtcttcaaag
aatgcaaacaactatgcaagccagtgttcctaagaaggaggcagatatta
gtcagtctgtagatgctgagtattacaagcatggctaacacaaacatgct
gggatatacattccctttaagttattagcacaatgagctccttaagagga
caagactcatcaaatgagcatcatctcatctgttttaaaggaaatgtgaa
agggcctagaattgagtttttgttcctatcaatgtctttgtattttaaaa
gcaaatgtgacttttctcctatttaataaaatttatcaaataaaaaaaaa
agagattcttgtgagatacagttcaagttccataaagtcaccagtttgcc
tacacagtgtttatagaaaaactatttaaaattctgaacttagattgtat
gtgtatgctttaaaaaaatcacacacacacacacaatctaaattttattc
cttattttcaatggaataaaacactagctcagcagtaagagccctgactg
ctcttctaaagggtccaagattgattctcacagaactcaagatcatctat
aactccaatctaaggggatctgattccctcttccagcatcagagggcacc
agacagtcatatatgctgcaaatgttcaacatattaaataaaattagaac
ctctactaaatccagtagaaagaataattagctgtgtagtgggattatgg
tgtcaggcattaataaacatccgaaaaattgtctttgcaaaaccaaatga
agttatctttttttacaaagta
gaattctcttcaagagggtctggatctcctgcaggaatgactagacccat
aagaggaaggacggaatctcctgaaggagagaatgacgggatccctagaa
ggaaggacttagtttcttctttgaagagacaagagcacaggagggttttg
aatcttaattctgaccttgtatttttagcataatggtctgaattccctga
atcctcagctggaaccctgagccaccagcaggaacactgttcctgtccca
gttgtctatgggaggtaaatatacagttcacttctttggctcataaaatc
ccaccattttcttccaatagccaacctccattctccaccatcacatcttt
acataaaatcctttctctccttgaacttctaagactactgatgtcttatg
agcacgtgtgcatggtgtgcgtacacgtgcgcacgctcgcgcgcacacac
catttctatggctttctctataaactcgttttcccaactaggccctctgg
ttccttactgaccaaacgataaaaagtccggagtctaagacttacatccc
tggtagcccttgtggctggtgctgacagaggcttagagccatgggatgtg
ggagggtaccaggccaggccttgctaaggccagcttgtcttgtctctgca
gtatgtgaatgagtctgagccacctgacagttgacagttgaccttctcct
tgctgagagggtgtctatcccttcttgcactctgttcattcatggtattt
cagtatgtgcaggtaggtgctgtattgatggatttttcctttttggatcc
ttggttgtaggtttaagaagaaaggatagttgaactgggaccagaaaatg
ataatctacacctgagattgtcagaggtaatgttttgctttgtcctgtag
attactgaccaacatgtgagtttttatgttgagtcagctactgcagtgca
caatttttgtaaggatggtggctttcccttgattttgtcccacccagtga
aggtgacacttctgtgtcatctatactggaacaagatgattctaaattat
ttattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14208362_14209556
seq2: B6Ng01-139I03.b_44_1215 (reverse)

seq1  TACTTTGTTAAAAAAAAAGGTAACTTCATTTGTGTTTTTGCAAAGACAAT  50
      ||||||||   |||||||| ||||||||||  || |||||||||||||||
seq2  TACTTTGT---AAAAAAAGATAACTTCATT--TGGTTTTGCAAAGACAAT  45

seq1  TTTTTTCTGGGATGTTTTATTATTTGCTGACACCAATAATCCCAACATCA  100
      |||    | ||||| ||||||| |  |||||||| |||||||| ||  ||
seq2  TTT----TCGGATG-TTTATTAATGCCTGACACC-ATAATCCC-ACTACA  88

seq1  CAGGCTAATTTATTCTTTTCTACTGGATATAGTAGAGTTTCTAATTTTTT  150
      || ||||| |||||| |||||||||||| |||||||| ||||||  ||||
seq2  CA-GCTAA-TTATTC-TTTCTACTGGATTTAGTAGAGGTTCTAA--TTTT  133

seq1  ATTTTATATGTTTGAACATTTTGCCAGCATATATGACTGTTCCTGGTGCC  200
      |||| ||||| ||||||||||   ||||||||||||||||  ||||||||
seq2  ATTTAATATG-TTGAACATTT--GCAGCATATATGACTGT--CTGGTGCC  178

seq1  CTCTGATGCTGGAAGAGGGAATCAGATCCCCTTAGATTGGAGTTATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCTGGAAGAGGGAATCAGATCCCCTTAGATTGGAGTTATAGAT  228

seq1  GATCTTGAGTTCTGTGAGAATCAATCTTGGACCCTTTAGAAGAGCAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAGTTCTGTGAGAATCAATCTTGGACCCTTTAGAAGAGCAGTCA  278

seq1  GGGCTCTTTACTGCTGAGCTAGTGTTTTATTCCATTGAAAATAAGGAATA  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTC-TTACTGCTGAGCTAGTGTTTTATTCCATTGAAAATAAGGAATA  327

seq1  AAATTTAGATTGTGTGTGTGTGTGTGATTTTTTTAAAGCATACACATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGATTGTGTGTGTGTGTGTGATTTTTTTAAAGCATACACATACA  377

seq1  ATCTAAGTTCAGAATTTTAAATAGTTTTTCTATAAACACTGTGTAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTTCAGAATTTTAAATAGTTTTTCTATAAACACTGTGTAGGCAA  427

seq1  ACTGGTGACTTTATGGAACTTGAACTGTATCTCACAAGAATCTCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGACTTTATGGAACTTGAACTGTATCTCACAAGAATCTCTTTTTT  477

seq1  TTTTATTTGATAAATTTTATTAAATAGGAGAAAAGTCACATTTGCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGATAAATTTTATTAAATAGGAGAAAAGTCACATTTGCTTTTA  527

seq1  AAATACAAAGACATTGATAGGAACAAAAACTCAATTCTAGGCCCTTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAGACATTGATAGGAACAAAAACTCAATTCTAGGCCCTTTCAC  577

seq1  ATTTCCTTTAAAACAGATGAGATGATGCTCATTTGATGAGTCTTGTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTAAAACAGATGAGATGATGCTCATTTGATGAGTCTTGTCCTC  627

seq1  TTAAGGAGCTCATTGTGCTAATAACTTAAAGGGAATGTATATCCCAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGCTCATTGTGCTAATAACTTAAAGGGAATGTATATCCCAGCAT  677

seq1  GTTTGTGTTAGCCATGCTTGTAATACTCAGCATCTACAGACTGACTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTTAGCCATGCTTGTAATACTCAGCATCTACAGACTGACTAATA  727

seq1  TCTGCCTCCTTCTTAGGAACACTGGCTTGCATAGTTGTTTGCATTCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTTCTTAGGAACACTGGCTTGCATAGTTGTTTGCATTCTTTG  777

seq1  AAGACTTTCAGATTTTTCTATACACATCCCATTAAAAACTGGATTTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTCAGATTTTTCTATACACATCCCATTAAAAACTGGATTTTAGA  827

seq1  GGTGAAATACATTCAAGTATCTGTCTGACTCAGGCCTGATTTTCTTTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATACATTCAAGTATCTGTCTGACTCAGGCCTGATTTTCTTTAGG  877

seq1  TGTTTTTATTTGCAGCTTGCAGGGCTAAGTCTTGAGCTCTTCGGAGTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTTGCAGCTTGCAGGGCTAAGTCTTGAGCTCTTCGGAGTCTA  927

seq1  CCTGAGATCCAGCTAGGACTTTGTGCATAGTGCCTTCACCCCACCTGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATCCAGCTAGGACTTTGTGCATAGTGCCTTCACCCCACCTGTGG  977

seq1  ATGTTCATGGTAGTAGACTCCTCTACTTAACAGAATCTCTACTTGGAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGGTAGTAGACTCCTCTACTTAACAGAATCTCTACTTGGAAAT  1027

seq1  ACACAAAACCCATCCAGTGTCCACAGTGGACCAGCATAAAAACCAATTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACCCATCCAGTGTCCACAGTGGACCAGCATAAAAACCAATTCA  1077

seq1  GTATGGCATAAGTGAAAGAAGGCACCCTAGAAGCAGAAGAATTTTATTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCATAAGTGAAAGAAGGCACCCTAGAAGCAGAAGAATTTTATTGG  1127

seq1  CCTCCTTTCTCTGGAATTAGCAAGGTGACTGAGACCTATGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTCTCTGGAATTAGCAAGGTGACTGAGACCTATGAATTC  1172

seq1: chr17_14047444_14048510
seq2: B6Ng01-139I03.g_67_1124

seq1  GAATTCTCTTCAAGAGGGTCTGGATCTCCTGCAGGAATGACTAGACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAAGAGGGTCTGGATCTCCTGCAGGAATGACTAGACCCAT  50

seq1  AAGAGGAAGGACGGAATCTCCTGAAGGAGAGAATGACGGGATCCCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGACGGAATCTCCTGAAGGAGAGAATGACGGGATCCCTAGAA  100

seq1  GGAAGGACTTAGTTTCTTCTTTGAAGAGACAAGAGCACAGGAGGGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACTTAGTTTCTTCTTTGAAGAGACAAGAGCACAGGAGGGTTTTG  150

seq1  AATCTTAATTCTGACCTTGTATTTTTAGCATAATGGTCTGAATTCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAATTCTGACCTTGTATTTTTAGCATAATGGTCTGAATTCCCTGA  200

seq1  ATCCTCAGCTGGAACCCTGAGCCACCAGCAGGAACACTGTTCCTGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCTGGAACCCTGAGCCACCAGCAGGAACACTGTTCCTGTCCCA  250

seq1  GTTGTCTATGGGAGGTAAATATACAGTTCACTTCTTTGGCTCATAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTATGGGAGGTAAATATACAGTTCACTTCTTTGGCTCATAAAATC  300

seq1  CCACCATTTTCTTCCAATAGCCAACCTCCATTCTCCACCATCACATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTTTCTTCCAATAGCCAACCTCCATTCTCCACCATCACATCTTT  350

seq1  ACATAAAATCCTTTCTCTCCTTGAACTTCTAAGACTACTGATGTCTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATCCTTTCTCTCCTTGAACTTCTAAGACTACTGATGTCTTATG  400

seq1  AGCACGTGTGCATGGTGTGCGTACACGTGCGCACGCTCGCGCGCACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGTGCATGGTGTGCGTACACGTGCGCACGCTCGCGCGCACACAC  450

seq1  CATTTCTATGGCTTTCTCTATAAACTCGTTTTCCCAACTAGGCCCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATGGCTTTCTCTATAAACTCGTTTTCCCAACTAGGCCCTCTGG  500

seq1  TTCCTTACTGACCAAACGATAAAAAGTCCGGAGTCTAAGACTTACATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTGACCAAACGATAAAAAGTCCGGAGTCTAAGACTTACATCCC  550

seq1  TGGTAGCCCTTGTGGCTGGTGCTGACAGAGGCTTAGAGCCATGGGATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCCCTTGTGGCTGGTGCTGACAGAGGCTTAGAGCCATGGGATGTG  600

seq1  GGAGGGTACCAGGCCAGGCCTTGCTAAGGCCAGCTTGTCTTGTCTCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTACCAGGCCAGGCCTTGCTAAGGCCAGCTTGTCTTGTCTCTGCA  650

seq1  GTATGTGAATGAGTCTGAGCCACCTGACAGTTGACAGTTGACCTTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGAATGAGTCTGAGCCACCTGACAGTTGACAGTTGACCTTCTCCT  700

seq1  TGCTGAGAGGGTGTCTATCCCTTCTTGCACTCTGTTCATTCATGGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAGGGTGTCTATCCCTTCTTGCACTCTGTTCATTCATGGTATTT  750

seq1  CAGTATGTGCAGGTAGGTGCTGTATTGATGGATTTTTCC-TTTTGGATCC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTATGTGCAGGTAGGTGCTGTATTGATGGATTTTTCCTTTTTGGATCC  800

seq1  TTGGTTGTAGGTTAAAGAAGAAAGGATAGTTGAACTGGGACCAGAAAATG  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTAGGTTTAAGAAGAAAGGATAGTTGAACTGGGACCAGAAAATG  850

seq1  ATAATCTACACCTGAGATTGTCAGAGGTAATGTTTTGCTTTGTCCTGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTACACCTGAGATTGTCAGAGGTAATGTTTTGCTTTGTCCTGTAG  900

seq1  ATTTACTGACCAACATGTGAGTTTTTATGTTGAGTCAGCTACTGCAGTTG  949
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  A-TTACTGACCAACATGTGAGTTTTTATGTTGAGTCAGCTACTGCAG-TG  948

seq1  CACAATATTTTGTAAAGGATGGTGGCTTTCCCTTGATTTTTGTCCCATCC  999
      |||||| |||||| |||||||||||||||||||||| |||||||||| ||
seq2  CACAAT-TTTTGT-AAGGATGGTGGCTTTCCCTTGA-TTTTGTCCCACCC  995

seq1  AGTGAGGTGGACACTTCCTGTGTCATCCTATACTGGAACAAAGATGAATT  1049
      ||||| |  ||||||| ||||||||| |||||||||||| |||||| |||
seq2  AGTGAAGGTGACACTT-CTGTGTCAT-CTATACTGGAAC-AAGATG-ATT  1041

seq1  CTAAATTATTTATCTTTG  1067
      ||||||||||||| ||||
seq2  CTAAATTATTTAT-TTTG  1058