BAC Information

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BAC

Clone NameB6Ng01-139J06
Chromosome17 (Build37)
Map Location 85,609,766 - 85,783,153
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneThada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139J06.bB6Ng01-139J06.g
ACCDH938526DH938527
length1,106856
definitionDH938526|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J06, 5' end.DH938527|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,782,028 - 85,783,153)(85,609,766 - 85,610,618)
sequence
gaattctttctaggaaaaaatggaccctagaaaaggagacaaaagaattc
ctagcagaagggaagatggaaggaggacctgggttgccccagaaacaccg
catcccttctgcggtaaagagaggagaaacagggcttctactgccaactt
ccccaaagccctgctgggccaagggagcttggggacacaaccaacaggcc
ctctcctttggacagagtcatcttatttcccttgaaaagacataaaagag
aaacaaatgaggtagaaagaacagagcagcaagtgctggtctaattgttg
ttccttattttggcttccaagtcactttgccaatatgggcataccatgga
aagccccaaacattaaggagggagtgggcttccttcctgcgctcactgat
ggtctacgcccggctcctaaagcctacccctatcccagagtctcgcttta
tcttccttacaggcaacactgtgactccattccaaagacaggaaaagctg
catgatccagagtggctgctctacacacttatgcaaaccttccaggagag
aaaaccataccagggggtacatacgcgctgttcatgaaaaactcaccaac
atccactaaccagccctaggcctgggcctcgcagtgcaacacaactttct
ttaagcatgctccaagtccctcacccccacccccgccccactaacggcct
tggggaaggaatggtttcttggaagaaagataagtgactctccactatct
ctttttgacataggtctcacgtaacctaggctgccttgaacaagtgtagc
tgagttgatcttgaatttctgcatctccaccctccacagacctgtttata
ttgatgctggggaccagaacaagtgtttcatgcatgctgagcaagccctc
tgccaactgagcccattgtctccccttctcacaaaagaatgggaattagc
cactttgaaaacctgatgcgccacttggcaaatggtttgataaataagac
cacatctcctgatgctgagataaccgctttaccaagcttcttgctattca
cttgaagtgcatctgtgatgttcattgaaaggtggagagatggaatggga
aggggg
gaattcaacgtggtggtggggaatgtgtagggaatttacttcaaatatat
aatcacatgccttttgtttgtgctggcgtattgaaggcagtgttgcttgt
ggtagcaaaaatacaggtaaccacacggcatctgcaaaatctccatttta
agagacctcatgccttaagatcagttgtggtgctaagtttaatgaccaat
gttcaatctctctctcgctctctctctctctctctcaattgaattctctg
atgtctctaagaaaacataatatggctatcagtcttttatcctctggaat
aggccgatattacacgtttgtaagtactatttgagtaattatgctaacaa
ggactgtctttggagctgtcggcagccctttacgtgaaattcttttctta
actgtttttcctggtgcatacactgacctcagagagtggcctccttctgc
ctgctactttgtaggatcatctgaaagacctatggtttcttgtctcccga
cagtgcagttgtttgatcatttaaaattaattgaagctttaatgtggcca
agctcaagttctggtgtagtcctccctcataactgctctgtggtgtgaag
ggcacacggaaaaccaggactgagaaactgcaagcacgcctgtataattt
gtattgtaatggtggaacacttactgtggggtttgtagtgagcacacttc
atcccttgtcctggcaataaaatggggacttttgttctttggtccttgtc
ctctgacaggacagaacatgatgaaaaatttccaatgttacccatgtctt
caagcgcacacaaggccctgagatatggcactgatgtctctgctgtgggg
agggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85782028_85783153
seq2: B6Ng01-139J06.b_46_1151 (reverse)

seq1  CCCCCCTCCCATTCCCATCTCTCCCACCTTTTCCAATATGAACATCACAG  50
      ||||| ||||||| |||||||| ||||||||  ||  |||||||||||||
seq2  CCCCCTTCCCATT-CCATCTCT-CCACCTTT--CA--ATGAACATCACAG  44

seq1  ATGCACTTTCAAGTGAAATAGCAAAGAAGGCTTTGTGTAAAGCGGGTTTA  100
      |||||| |||||||| |||||| ||||| ||||   |||||||||  |||
seq2  ATGCAC-TTCAAGTG-AATAGC-AAGAA-GCTT--GGTAAAGCGG--TTA  86

seq1  TCCTCAGCATCAGTGAGATGTGGTCTTATTTATCAAACCAATTTGCCAAG  150
      | ||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  T-CTCAGCATCAG-GAGATGTGGTCTTATTTATCAAACC-ATTTGCCAAG  133

seq1  TGGCGCATCAGGTTTTTCAAAGTGGCTAATTCCCATTTCTTTTGTGAGAA  200
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TGGCGCATCAGG-TTTTCAAAGTGGCTAATTCCCA-TTCTTTTGTGAGAA  181

seq1  GGGGAGAC-ATGGGCTCAGTTGGCAGAGGGCTTGCTCAGCATGCATGAAA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACAATGGGCTCAGTTGGCAGAGGGCTTGCTCAGCATGCATGAAA  231

seq1  CACTTGTTCTGGTCCCCAGCATCAATATAAACAGGTCTGTGGAGGGTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTTCTGGTCCCCAGCATCAATATAAACAGGTCTGTGGAGGGTGGA  281

seq1  GATGCAGAAATTCAAGATCAACCTCAGCTACACTTGTTCAAGGCAGCCTA  349
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGCAGAAATTCAAGATCAA-CTCAGCTACACTTGTTCAAGGCAGCCTA  330

seq1  GGTTACGTGAGACCCTATGTCAAAAAGAGATAGTGGAGAGTCACTTATCT  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTACGTGAGA-CCTATGTCAAAAAGAGATAGTGGAGAGTCACTTATCT  379

seq1  TTCTTCCAAGAAACCATTCCTTCCCCAAGGCCGTTAGTGGGGCGGGGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAAGAAACCATTCCTTCCCCAAGGCCGTTAGTGGGGCGGGGGTG  429

seq1  GGGGTGAGGGACTTGGAGCATGCTTAAAGAAAGTTGTGTTGCACTGCGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGGGACTTGGAGCATGCTTAAAGAAAGTTGTGTTGCACTGCGAG  479

seq1  GCCCAGGCCTAGGGCTGGTTAGTGGATGTTGGTGAGTTTTTCATGAACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCCTAGGGCTGGTTAGTGGATGTTGGTGAGTTTTTCATGAACAG  529

seq1  CGCGTATGTACCCCCTGGTATGGTTTTCTCTCCTGGAAGGTTTGCATAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTATGTACCCCCTGGTATGGTTTTCTCTCCTGGAAGGTTTGCATAAG  579

seq1  TGTGTAGAGCAGCCACTCTGGATCATGCAGCTTTTCCTGTCTTTGGAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAGCAGCCACTCTGGATCATGCAGCTTTTCCTGTCTTTGGAATG  629

seq1  GAGTCACAGTGTTGCCTGTAAGGAAGATAAAGCGAGACTCTGGGATAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAGTGTTGCCTGTAAGGAAGATAAAGCGAGACTCTGGGATAGGG  679

seq1  GTAGGCTTTAGGAGCCGGGCGTAGACCATCAGTGAGCGCAGGAAGGAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTTAGGAGCCGGGCGTAGACCATCAGTGAGCGCAGGAAGGAAGC  729

seq1  CCACTCCCTCCTTAATGTTTGGGGCTTTCCATGGTATGCCCATATTGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCTCCTTAATGTTTGGGGCTTTCCATGGTATGCCCATATTGGCA  779

seq1  AAGTGACTTGGAAGCCAAAATAAGGAACAACAATTAGACCAGCACTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTGGAAGCCAAAATAAGGAACAACAATTAGACCAGCACTTGCT  829

seq1  GCTCTGTTCTTTCTACCTCATTTGTTTCTCTTTTATGTCTTTTCAAGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTCTTTCTACCTCATTTGTTTCTCTTTTATGTCTTTTCAAGGGA  879

seq1  AATAAGATGACTCTGTCCAAAGGAGAGGGCCTGTTGGTTGTGTCCCCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGACTCTGTCCAAAGGAGAGGGCCTGTTGGTTGTGTCCCCAAG  929

seq1  CTCCCTTGGCCCAGCAGGGCTTTGGGGAAGTTGGCAGTAGAAGCCCTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGGCCCAGCAGGGCTTTGGGGAAGTTGGCAGTAGAAGCCCTGTT  979

seq1  TCTCCTCTCTTTACCGCAGAAGGGATGCGGTGTTTCTGGGGCAACCCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCTTTACCGCAGAAGGGATGCGGTGTTTCTGGGGCAACCCAGG  1029

seq1  TCCTCCTTCCATCTTCCCTTCTGCTAGGAATTCTTTTGTCTCCTTTTCTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCCATCTTCCCTTCTGCTAGGAATTCTTTTGTCTCCTTTTCTA  1079

seq1  GGGTCCATTTTTTCCTAGAAAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  GGGTCCATTTTTTCCTAGAAAGAATTC  1106

seq1: chr17_85609766_85610618
seq2: B6Ng01-139J06.g_68_923

seq1  GAATTCAACGTGGTGGTGGGGAATGTGTAGGGAATTTACTTCAAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTGGTGGTGGGGAATGTGTAGGGAATTTACTTCAAATATAT  50

seq1  AATCACATGCCTTTTGTTTGTGCTGGCGTATTGAAGGCAGTGTTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATGCCTTTTGTTTGTGCTGGCGTATTGAAGGCAGTGTTGCTTGT  100

seq1  GGTAGCAAAAATACAGGTAACCACACGGCATCTGCAAAATCTCCATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAAAAATACAGGTAACCACACGGCATCTGCAAAATCTCCATTTTA  150

seq1  AGAGACCTCATGCCTTAAGATCAGTTGTGGTGCTAAGTTTAATGACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTCATGCCTTAAGATCAGTTGTGGTGCTAAGTTTAATGACCAAT  200

seq1  GTTCAATCTCTCTCTCGCTCTCTCTCTCTCTCTCTCAATTGAATTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCTCTCTCTCGCTCTCTCTCTCTCTCTCTCAATTGAATTCTCTG  250

seq1  ATGTCTCTAAGAAAACATAATATGGCTATCAGTCTTTTATCCTCTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTAAGAAAACATAATATGGCTATCAGTCTTTTATCCTCTGGAAT  300

seq1  AGGCCGATATTACACGTTTGTAAGTACTATTTGAGTAATTATGCTAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGATATTACACGTTTGTAAGTACTATTTGAGTAATTATGCTAACAA  350

seq1  GGACTGTCTTTGGAGCTGTCGGCAGCCCTTTACGTGAAATTCTTTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCTTTGGAGCTGTCGGCAGCCCTTTACGTGAAATTCTTTTCTTA  400

seq1  ACTGTTTTTCCTGGTGCATACACTGACCTCAGAGAGTGGCCTCCTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTCCTGGTGCATACACTGACCTCAGAGAGTGGCCTCCTTCTGC  450

seq1  CTGCTACTTTGTAGGATCATCTGAAAGACCTATGGTTTCTTGTCTCCCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTTTGTAGGATCATCTGAAAGACCTATGGTTTCTTGTCTCCCGA  500

seq1  CAGTGCAGTTGTTTGATCATTTAAAATTAATTGAAGCTTTAATGTGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTTGTTTGATCATTTAAAATTAATTGAAGCTTTAATGTGGCCA  550

seq1  AGCTCAAGTTCTGGTGTAGTCCTCCCTCATAACTGCTCTGTGGTGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGTTCTGGTGTAGTCCTCCCTCATAACTGCTCTGTGGTGTGAAG  600

seq1  GGCACACGGAAAACCAGGACTGAGAAACTGCAAGCACGCCTGTATAA-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCACACGGAAAACCAGGACTGAGAAACTGCAAGCACGCCTGTATAATTT  650

seq1  GTATTGTAATGGTGGAACACTTACTGTGGGG-TTGTAGTGAGCACACTTC  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTATTGTAATGGTGGAACACTTACTGTGGGGTTTGTAGTGAGCACACTTC  700

seq1  ATCCCTTGTCCTGGCAATAAAATGGGGACTTTTGTTCTTTGGTCCTTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTGTCCTGGCAATAAAATGGGGACTTTTGTTCTTTGGTCCTTGTC  750

seq1  CTCTGACAGGACAGAACATGATGAAAAATTTCCAATGTTACCCATGTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAGGACAGAACATGATGAAAAATTTCCAATGTTACCCATGTCTT  800

seq1  CAAGCGCACACAAGGCCCTGAGATATGGCACTGATGTCTCTGCTGT-GGG  847
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAGCGCACACAAGGCCCTGAGATATGGCACTGATGTCTCTGCTGTGGGG  850

seq1  AGGGTA  853
      ||||||
seq2  AGGGTA  856