BAC Information

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BAC

Clone NameB6Ng01-139P10
Chromosome17 (Build37)
Map Location 30,556,705 - 30,753,365
singlet/doubletdoublet
Overlap geneBtbd9, Glo1, LOC666942
Upstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, EG623169
Downstream gene1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139P10.bB6Ng01-139P10.g
ACCDH938816DH938817
length3071,071
definitionDH938816|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P10, 5' end.DH938817|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,753,060 - 30,753,365)(30,556,705 - 30,557,775)
sequence
tatgactgaagtccttatcacgagaaaagaagtgcactgcagatgcagag
gcacagtaaagatgttcaccttcagacagatcagagactgatatttgtgc
gactataaatcttcaaagtctgggagtcaccaaaacccggaaaaaagaaa
ggaaagaaacattttttcctttgagtctgaaaaggagagcacgtgaaaga
acagatctgagttacgttttaaaatatttacttatttttattttatgtgt
ataaatgttttgcctgtctgtgactgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgt
gaattcacctgttttcaaaacaaggataaaaaaacgtgcctgtgttactc
gtgaaggtgacaataatatcgatgaaaaggatgtcagctcactcaagaag
gcaagcccgcgcccgaggtaaatgccccagtggctcctgcatgcatgcag
cctctctctcttccagagccccattcagtctgaaggagatggttaagagg
tctcatctgtttagttggaaagcatgtagcaggtccttcatgagaagacc
acagacaattgtctgagtgaaaatttatgcaaagtaacagattagtgata
gttttacaccagcagggcttcgtgtctcatcattttatacagactactaa
tagagtttagtattagaatttgaaaaggaacaaaaaacggagagctctcc
ctgcagaatttattgtactctttcggctattatgggtttcattacagatt
tctactccaaggcattattctttgttttattttcaaaatgtggctcatac
tttgaaaatggctttctgggaaacctccacatttgcatgaattcatatga
aggcccatcctctatctgcagccatcattctgttcggcagcctgttacat
attttataggattaggacgggattaataacggactccactacaacattcc
atagaagtacaaaatcattacacctcggcaacgcacataccaagaatgct
cttagacagttttacaattaaggggaccttctagaagacaatgaggtgga
tgaggacatcgctcagttcgtcctggcccactgctgcaggacagcctgac
caacctctggccaggacttgggtgagggcggctccctacttggctcctcc
ctactccctactttgtttcacctcagtgcagagaaacagggctggagatt
tactcgctcagccccaatgactgctgagcaaccaatggaggctgctttta
gtaaagggcactcagaacatagtaagtgccaagtggtggggccaagctga
caccatttgcaatccaaccctctattcgggatatgacagaacccctccag
tcgggctagcatggctcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30753060_30753365
seq2: B6Ng01-139P10.b_52_358 (reverse)

seq1  ACACACACACACACACACACACACACACACACAGTCACAGACAGGCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAGTCACAGACAGGCAAAA  50

seq1  CATTTATACACATAAAATAAAAATAAGTAAATATTTTAAAACGTAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACACATAAAATAAAAATAAGTAAATATTTTAAAACGTAACTCA  100

seq1  GATCTGTTCTTTCACGTGCTCTCCTTTTCAGACTCAAAGGAAAAAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTCTTTCACGTGCTCTCCTTTTCAGACTCAAAGGAAAAAATGTT  150

seq1  TCTTTCCTTTCTTTTTTCCGGGTTTTGGTGACTCCCAGACTTTGAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTCTTTTTTCCGGGTTTTGGTGACTCCCAGACTTTGAAGATT  200

seq1  TATAGTCGCACAAATATCAGTCTCTGATCTGTCTGAAGGTGAACATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCGCACAAATATCAGTCTCTGATCTGTCTGAAGGTGAACATCTTT  250

seq1  ACTGTGCCTCTGCATCTGCAGTGCACTTCTTTTCTC-TGATAAGGACTTC  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTGTGCCTCTGCATCTGCAGTGCACTTCTTTTCTCGTGATAAGGACTTC  300

seq1  AGTCATA  306
      |||||||
seq2  AGTCATA  307

seq1: chr17_30556705_30557775
seq2: B6Ng01-139P10.g_69_1139

seq1  GAATTCACCTGTTTTCAAAACAAGGATAAAAAAACGTGCCTGTGTTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTTTTCAAAACAAGGATAAAAAAACGTGCCTGTGTTACTC  50

seq1  GTGAAGGTGACAATAATATCGATGAAAAGGATGTCAGCTCACTCAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTGACAATAATATCGATGAAAAGGATGTCAGCTCACTCAAGAAG  100

seq1  GCAAGCCCGCGCCCGAGGTAAATGCCCCAGTGGCTCCTGCATGCATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCCGCGCCCGAGGTAAATGCCCCAGTGGCTCCTGCATGCATGCAG  150

seq1  CCTCTCTCTCTTCCAGAGCCCCATTCAGTCTGAAGGAGATGGTTAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTTCCAGAGCCCCATTCAGTCTGAAGGAGATGGTTAAGAGG  200

seq1  TCTCATCTGTTTAGTTGGAAAGCATGTAGCAGGTCCTTCATGAGAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTGTTTAGTTGGAAAGCATGTAGCAGGTCCTTCATGAGAAGACC  250

seq1  ACAGACAATTGTCTGAGTGAAAATTTATGCAAAGTAACAGATTAGTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAATTGTCTGAGTGAAAATTTATGCAAAGTAACAGATTAGTGATA  300

seq1  GTTTTACACCAGCAGGGCTTCGTGTCTCATCATTTTATACAGACTACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACACCAGCAGGGCTTCGTGTCTCATCATTTTATACAGACTACTAA  350

seq1  TAGAGTTTAGTATTAGAATTTGAAAAGGAACAAAAAACGGAGAGCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTAGTATTAGAATTTGAAAAGGAACAAAAAACGGAGAGCTCTCC  400

seq1  CTGCAGAATTTATTGTACTCTTTCGGCTATTATGGGTTTCATTACAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATTTATTGTACTCTTTCGGCTATTATGGGTTTCATTACAGATT  450

seq1  TCTACTCCAAGGCATTATTCTTTGTTTTATTTTCAAAATGTGGCTCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCAAGGCATTATTCTTTGTTTTATTTTCAAAATGTGGCTCATAC  500

seq1  TTTGAAAATGGCTTTCTGGGAAACCTCCACATTTGCATGAATTCATATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATGGCTTTCTGGGAAACCTCCACATTTGCATGAATTCATATGA  550

seq1  AGGCCCATCCTCTATCTGCAGCCATCATTCTGTTCGGCAGCCTGTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATCCTCTATCTGCAGCCATCATTCTGTTCGGCAGCCTGTTACAT  600

seq1  ATTTTATAGGATTAGGACGGGATTAATAACGGACTCCACTACAACATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGGATTAGGACGGGATTAATAACGGACTCCACTACAACATTCC  650

seq1  ATAGAAGTACAAAATCATTACACCTCGGCAACGCACATACCAAGAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTACAAAATCATTACACCTCGGCAACGCACATACCAAGAATGCT  700

seq1  CTTAGACAGTTTTACAATTAAGGGGACCTTCTAGAAGACAATGAGGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACAGTTTTACAATTAAGGGGACCTTCTAGAAGACAATGAGGTGGA  750

seq1  TGAGGACATCGCTCAGTTCGTCCTGGCCCACTGCTGCAGGACAGCCTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACATCGCTCAGTTCGTCCTGGCCCACTGCTGCAGGACAGCCTGAC  800

seq1  CAACCTCTGGCCAGGACTTGGGTGAGGGCGGCTCCCTACTTGGCTCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTGGCCAGGACTTGGGTGAGGGCGGCTCCCTACTTGGCTCCTCC  850

seq1  CTACTCCCTACTTTGTTTCACCTCAGTGCAGAGAAACAGGGCTGGAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCCTACTTTGTTTCACCTCAGTGCAGAGAAACAGGGCTGGAGATT  900

seq1  TACTCGCTCAGCCCCAATGACTGCTGAGCAAACCAAT-GAGGCTGCTTTT  949
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TACTCGCTCAGCCCCAATGACTGCTGAGC-AACCAATGGAGGCTGCTTTT  949

seq1  AGTAAAAGGGCACTCAGAACATAGTAAGTGCCAAGTGGTGGGGCAAAGCT  999
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGT-AAAGGGCACTCAGAACATAGTAAGTGCCAAGTGGTGGGGCCAAGCT  998

seq1  GACA-CATTTGCAATCCAACCCTCTATCCGGGATAATGACAGGACGCCT-  1047
      |||| |||||||||||||||||||||| |||||| ||||||| || ||| 
seq2  GACACCATTTGCAATCCAACCCTCTATTCGGGAT-ATGACAGAACCCCTC  1047

seq1  CAGTCGGGCTAGCATGGCTCCTCT  1071
      ||||||||||||||||||||||||
seq2  CAGTCGGGCTAGCATGGCTCCTCT  1071