BAC Information

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BAC

Clone NameB6Ng01-140C05
Chromosome17 (Build37)
Map Location 82,734,036 - 82,888,041
singlet/doubletdoublet
Overlap geneLOC668836, EG433141
Upstream geneLOC100043704, Slc8a1, EG668832, LOC100043707, LOC625467
Downstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C05.bB6Ng01-140C05.g
ACCDH938947DH938948
length8561,003
definitionDH938947|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C05, 5' end.DH938948|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,887,516 - 82,888,041)(82,734,036 - 82,735,045)
sequence
gaattcgaactatctaatatcccctgggggttcaccagtgggtgcacagg
tgaagatgatgacctcctttcttccacagcccataacaacctcaagttca
gcagtaaggagtagagttaaatgagttggttctctctcctagattgacta
ttgagagggtgttccttgtgaagttccctagcatgtaattatttttgtgt
gtgagtttcttgataagattggttgtatcatgcctgggaggttggattcc
attgtcctttcccctatcttcaggttcttatattctttcacactgattcc
tgagccttacaggctataagtgactcatttgaagattcccagtacaaagg
accaggaaatatcttcaacaaaatcatagaagaaaacctccctgactgaa
agaaagagatggctataaacttacaagaagcttacagaacaccgaatata
ctggagcagaaaagaaaattctgcctccacacaatgatcaaaacactcaa
tgtaaagagcaaagaaagagcattaaaagctgtaatggaaaaaagccaag
tataatataaaggcaaatgatcagaatctacctgacttttcaaaagagat
tctaaaagccagacaatcctggacaggtatcttctagatcctaagagacc
agagatacaagaccatgtacaatacccatcaaaaatctcaatcaccatag
atggagaaaacaagatatgtcatgacaaaaccaaacttaatatctttcta
ctaatccaggaatacaaggtatactagaaagtaaactccatcacaaggag
aatcactacacccaagacaataagagattaaatatttgacagcaaaacta
gaagaa
gaattcacacagatgagacaattcagatgtttaattcttaagacaagccc
aggtataatactaatgatgtcattaaaggtacaacttgacttcttcatat
attccgttaaaatgaaaaggatagcacatatcttcacagaatggataaaa
gtgaatagttttggtaaatcttgattcatcttttgaaattgaatggtatt
gttcctacaaataaaatgggccagaaaaaaagttagaaatatctgattag
catccaaactaacaacatctgtcataatgtatatgcctattttatatcat
tatttttaaatgacatgattaacttcttaagttctaagtaaaaatattta
ttttgcacagtagaggatcatccttgtaatctgcagattttattctgcag
ctttcatgattctgtacatgattttgtgcttatatatttggatggttttt
cctaagtggatttaatccaatattctagagaaatttaattcatagtcact
ccacacacaacaggactgatgcacatacgaatcctcagagactatggcag
catgctcagggctgcatagtttcaaagcagagtcatcatgcagtgacaga
ataaagtataccttggctcctgctcttcaagaagatatctacaggtgaca
agaacttgcaaacaaaaattagctttctccaatggagtctcacttattat
ctaacctctgtgaatgacaacttgtaagcctatcacattgtatactgaga
tatttttgtattattttattgtactcctaagactagtatagtaccctact
aacactgatacatgctttaggacaagatactcagatgcctctgcttggat
tctgtaaaaccaggaagttttcttctatgtttccatttgacttcgtacaa
catgctacatataaagtaagatccaaatgtatgtaaaaaatagaagactg
ggttccactgcttctgggagcagattctgtgatccagctcccactcttac
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82887516_82888041
seq2: B6Ng01-140C05.b_44_569 (reverse)

seq1  TTAATGCTCTTTCTTTGCTCTTTACATTGAGTGTTTTGATCATTGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTCTTTCTTTGCTCTTTACATTGAGTGTTTTGATCATTGTGTGG  50

seq1  AGGCAGAATTTTCTTTTCTGCTCCAGTATATTCGGTGTTCTGTAAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAATTTTCTTTTCTGCTCCAGTATATTCGGTGTTCTGTAAGCTTC  100

seq1  TTGTAAGTTTATAGCCATCTCTTTCTTTCAGTCAGGGAGGTTTTCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTTTATAGCCATCTCTTTCTTTCAGTCAGGGAGGTTTTCTTCTA  150

seq1  TGATTTTGTTGAAGATATTTCCTGGTCCTTTGTACTGGGAATCTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTTGAAGATATTTCCTGGTCCTTTGTACTGGGAATCTTCAAAT  200

seq1  GAGTCACTTATAGCCTGTAAGGCTCAGGAATCAGTGTGAAAGAATATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTATAGCCTGTAAGGCTCAGGAATCAGTGTGAAAGAATATAAG  250

seq1  AACCTGAAGATAGGGGAAAGGACAATGGAATCCAACCTCCCAGGCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAGATAGGGGAAAGGACAATGGAATCCAACCTCCCAGGCATGAT  300

seq1  ACAACCAATCTTATCAAGAAACTCACACACAAAAATAATTACATGCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAATCTTATCAAGAAACTCACACACAAAAATAATTACATGCTAGG  350

seq1  GAACTTCACAAGGAACACCCTCTCAATAGTCAATCTAGGAGAGAGAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCACAAGGAACACCCTCTCAATAGTCAATCTAGGAGAGAGAACCA  400

seq1  ACTCATTTAACTCTACTCCTTACTGCTGAACTTGAGGTTGTTATGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTAACTCTACTCCTTACTGCTGAACTTGAGGTTGTTATGGGCTG  450

seq1  TGGAAGAAAGGAGGTCATCATCTTCACCTGTGCACCCACTGGTGAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGAAGAAAGGAGGTCATCATCTTCACCTGTGCACCCACTGGTGAACCCC  500

seq1  CAGGGGATATTAGATAGTTCGAATTC  526
      ||||||||||||||||||||||||||
seq2  CAGGGGATATTAGATAGTTCGAATTC  526

seq1: chr17_82734036_82735045
seq2: B6Ng01-140C05.g_65_1067

seq1  GAATTCACACAGATGAGACAATTCAGATGTTTAATTCTTAAGACAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGATGAGACAATTCAGATGTTTAATTCTTAAGACAAGCCC  50

seq1  AGGTATAATACTAATGATGTCATTAAAGGTACAACTTGACTTCTTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAATACTAATGATGTCATTAAAGGTACAACTTGACTTCTTCATAT  100

seq1  ATTCCGTTAAAATGAAAAGGATAGCACATATCTTCACAGAATGGATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGTTAAAATGAAAAGGATAGCACATATCTTCACAGAATGGATAAAA  150

seq1  GTGAATAGTTTTGGTAAATCTTGATTCATCTTTTGAAATTGAATGGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGTTTTGGTAAATCTTGATTCATCTTTTGAAATTGAATGGTATT  200

seq1  GTTCCTACAAATAAAATGGGCCAGAAAAAAAGTTAGAAATATCTGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACAAATAAAATGGGCCAGAAAAAAAGTTAGAAATATCTGATTAG  250

seq1  CATCCAAACTAACAACATCTGTCATAATGTATATGCCTATTTTATATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAACTAACAACATCTGTCATAATGTATATGCCTATTTTATATCAT  300

seq1  TATTTTTAAATGACATGATTAACTTCTTAAGTTCTAAGTAAAAATATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATGACATGATTAACTTCTTAAGTTCTAAGTAAAAATATTTA  350

seq1  TTTTGCACAGTAGAGGATCATCCTTGTAATCTGCAGATTTTATTCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACAGTAGAGGATCATCCTTGTAATCTGCAGATTTTATTCTGCAG  400

seq1  CTTTCATGATTCTGTACATGATTTTGTGCTTATATATTTGGATGGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGATTCTGTACATGATTTTGTGCTTATATATTTGGATGGTTTTT  450

seq1  CCTAAGTGGATTTAATCCAATATTCTAGAGAAATTTAATTCATAGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGGATTTAATCCAATATTCTAGAGAAATTTAATTCATAGTCACT  500

seq1  CCACACACAACAGGACTGATGCACATACGAATCCTCAGAGACTATGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACAACAGGACTGATGCACATACGAATCCTCAGAGACTATGGCAG  550

seq1  CATGCTCAGGGCTGCATAGTTTCAAAGCAGAGTCATCATGCAGTGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAGGGCTGCATAGTTTCAAAGCAGAGTCATCATGCAGTGACAGA  600

seq1  ATAAAGTATACCTTGGCTCCTGCTCTTCAAGAAGATATCTACAGGTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATACCTTGGCTCCTGCTCTTCAAGAAGATATCTACAGGTGACA  650

seq1  AGAACTTGCAAACAAAAATTAGCTTTCTCCAATGGAGTCTCACTTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGCAAACAAAAATTAGCTTTCTCCAATGGAGTCTCACTTATTAT  700

seq1  CTAACCTCTGTGAATGACAACTTGTAAGCCTATCACATTGTATACTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCTGTGAATGACAACTTGTAAGCCTATCACATTGTATACTGAGA  750

seq1  TATTTTTGTATTATTTTATTGTACTCCTAAGACTAGTATAGTACCCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTATTATTTTATTGTACTCCTAAGACTAGTATAGTACCCTACT  800

seq1  AACACTGATACATGCTTTAGGACAAGATACTCAGATGCCTCTGCTTTGGA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACACTGATACATGCTTTAGGACAAGATACTCAGATGCCTCTGC-TTGGA  849

seq1  TTCCTGTAAAACCAGGAAGTTTTCTTCTATGTTTCCATTTGACTTCGTAC  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-CTGTAAAACCAGGAAGTTTTCTTCTATGTTTCCATTTGACTTCGTAC  898

seq1  AAACATGCTACATATAAAGTAAGATCCAAATGTTATGTTAAAAAATAGAA  950
       ||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  -AACATGCTACATATAAAGTAAGATCCAAATG-TATG-TAAAAAATAGAA  945

seq1  GACTGGGTTCCCACCTGCTCCTGGGAGCAGATCCTGTGATCCAGCTCCCA  1000
      |||||||||||   ||||| |||||||||||| |||||||||||||||||
seq2  GACTGGGTTCC--ACTGCTTCTGGGAGCAGATTCTGTGATCCAGCTCCCA  993

seq1  CCCCTACCCC  1010
      | | ||||||
seq2  CTCTTACCCC  1003