BAC Information

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BAC

Clone NameB6Ng01-140E15
Chromosome17 (Build37)
Map Location 47,529,599 - 47,702,081
singlet/doubletdoublet
Overlap geneGuca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3
Upstream geneZfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10
Downstream geneBysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E15.bB6Ng01-140E15.g
ACCDH939061DH939062
length1,088967
definitionDH939061|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E15, 5' end.DH939062|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,700,981 - 47,702,081)(47,529,599 - 47,530,564)
sequence
gaattcactatatacccaggctagctagcatcaaactgacagacatcctc
ctgcttcagcttcccaagcgctaggattacagatgtcagccacaatatcc
tacttgcccctttctttctccttcctgaggtgctggggttgttcccagag
agactcaagaacacaaggcaggtattctgccgctgagctataccccaaac
ccaaagttctttccatactgcaggctgtctccactgtgatcagagagtgc
cggagacaggaaaccatgctgggaaagattacttctcgctgacctgacac
aaaactctgatattaggggagataacacttagctgacagcgaagggtgtg
aagtttcaccactacaggggttactgcagatgagtcaccccctgctagaa
aacatgaaaccctacagtgtggatggggcagagtcttcagtagtggttca
tcaaaaattttgacaacaatctcagtaaaatcaaataaacaacaacaaca
acaaaaattgagacagcggctcactctgtagcccaggctggccacaaact
ccaggaagtccttctgcctcagccacctaagaagtagaattacagacacg
agccaccgcaactggctcaagtcctcaagtgtatgtggtattgtcaacaa
tgatttgaaaagctctaagaaactctttcttgatgctttttttttttttt
aagtctgggtttcttatgtagaccaacctggcctcaaactcatgacacgc
ctgcctcaccttctaaggtgtcagggttacaagtgtgtctgtcccacaaa
gtccagcttggaataacacttttctactatccagcattcacctcagtggc
tcacaaacccataactgcatcttcaggagactggaggccactggcctcca
agggcatctacatgcaaaccctcccccctccattcacacacacagagaca
cacactcaattaaaataaatctggggctaaagagatggttcagcagttaa
ggggttcagttatcagcacctactgtatactctaactgcctttaatctca
attcttgggatgggatgtttggcctggcccttcagttc
gaattccaggccagactttgcctccgacagctgttggactccctaacctc
ctgcaggtcgactagatggcttccagttatcccgcaaatgtccttcatgc
acccaatatagaagctaggctaccagggaacctctctgcctttctctgcc
tccttccatctgtgcagctggggaagtcacctcagaggacaggaagtagg
accagtgtcacactaagtaggaccagtgtcacacttggcaaattctatct
ggaacctggtggattgttggtgttaccttgaatagatatagatttcacat
taaaatacagtcaactaacttattgtcctggaggtgaaatttgtttgctt
gttggagcaaggccccacaactgtagctcaggctagcctggagctcactg
tatagcccaggctagcagaactcctgcctcgggctccggagccctgagat
cataagtatgaacccaagtttttgtgcatgggagaagggctgtttgtttt
catgttgtgggacaattgagacagtttcagaagcccaggtcagcttgaaa
cccatggcaatcctcctgcctcagctccctgagtgctgagtgcacgactg
tggccagcccctgggtgcttgtataacatatgtgcaccactgtgcccagt
gtgaacttgaagtgcgttttgctttgtttatttttatttcatgtgtatgg
gtgtttttttcctgcatatgtctatgcatcatgtgtgtgcactgtccacc
cgaggagatcagtcctgtggcactggagtacagatgtttgtgaactactc
atgtggggtgctgggatcaagcccaggtccttctgctagaacaaccagtg
cccttactggaaaagctgtctctcagtcttttagagttttggagtttgta
gaatggtgctaaaaagttcttgtaagaaatagctaagggggtgtccgctt
gcaggatgatgggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47700981_47702081
seq2: B6Ng01-140E15.b_47_1134 (reverse)

seq1  GAACTGAAGGGGCCAGGCAAAAACATCCCATCCCAAAGAATTGGAGTTAA  50
      |||||||| |||||||||  |||||||||||||| ||||||||   ||||
seq2  GAACTGAA-GGGCCAGGC-CAAACATCCCATCCC-AAGAATTGAGATTAA  47

seq1  AGGCAGTTATGAGCTATACCATGTAGGTGCTGATAACTGAACCCCCTTTT  100
      ||||||||| ||| |||||   |||||||||||||||||||||||   ||
seq2  AGGCAGTTA-GAG-TATAC--AGTAGGTGCTGATAACTGAACCCC---TT  90

seq1  AACTGCTGAACCATCTCTCTAGCCCCAAGATTTATTTTTAATTGGGTGTG  150
      |||||||||||||||||| ||||||| ||||||| ||||||||| |||||
seq2  AACTGCTGAACCATCTCTTTAGCCCC-AGATTTA-TTTTAATTGAGTGTG  138

seq1  TGTCTCTGTGTGTGTGAATGGAGGGGGGGGGGTTTGCATGTAGGTGCCCT  200
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TGTCTCTGTGTGTGTGAATGGAGGGGGGAGGGTTTGCATGTAGATGCCCT  188

seq1  TGGAGGCCAGTGGCCTCCAGTCTCCTGGAGATGCAGTTATGGGTTTGTGA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAGGCCAGTGGCCTCCAGTCTCCTGAAGATGCAGTTATGGGTTTGTGA  238

seq1  GCCACCTGAGGTGAATGCTGGATAGTAGAAAAGTGTTATTCCAAGCTGGA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCA-CTGAGGTGAATGCTGGATAGTAGAAAAGTGTTATTCCAAGCTGGA  287

seq1  CTTTGTGGGACAGACACACTTGTAACCCTGACACCTTAGAAGGTGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGACAGACACACTTGTAACCCTGACACCTTAGAAGGTGAGGCA  337

seq1  GGCGTGTCATGAGTTTGAGGCCAGGTTGGTCTACATAAGAAACCCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTCATGAGTTTGAGGCCAGGTTGGTCTACATAAGAAACCCAGACT  387

seq1  TAAAAAAAAAAAAAAGCATCAAGAAAGAGTTTCTTAGAGCTTTTCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAGCATCAAGAAAGAGTTTCTTAGAGCTTTTCAAATC  437

seq1  ATTGTTGACAATACCACATACACTTGAGGACTTGAGCCAGTTGCGGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGACAATACCACATACACTTGAGGACTTGAGCCAGTTGCGGTGGC  487

seq1  TCGTGTCTGTAATTCTACTTCTTAGGTGGCTGAGGCAGAAGGACTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTCTGTAATTCTACTTCTTAGGTGGCTGAGGCAGAAGGACTTCCTG  537

seq1  GAGTTTGTGGCCAGCCTGGGCTACAGAGTGAGCCGCTGTCTCAATTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGGCCAGCCTGGGCTACAGAGTGAGCCGCTGTCTCAATTTTTG  587

seq1  TTGTTGTTGTTGTTTATTTGATTTTACTGAGATTGTTGTCAAAATTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTATTTGATTTTACTGAGATTGTTGTCAAAATTTTTG  637

seq1  ATGAACCACTACTGAAGACTCTGCCCCATCCACACTGTAGGGTTTCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCACTACTGAAGACTCTGCCCCATCCACACTGTAGGGTTTCATGT  687

seq1  TTTCTAGCAGGGGGTGACTCATCTGCAGTAACCCCTGTAGTGGTGAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCAGGGGGTGACTCATCTGCAGTAACCCCTGTAGTGGTGAAACT  737

seq1  TCACACCCTTCGCTGTCAGCTAAGTGTTATCTCCCCTAATATCAGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCTTCGCTGTCAGCTAAGTGTTATCTCCCCTAATATCAGAGTTT  787

seq1  TGTGTCAGGTCAGCGAGAAGTAATCTTTCCCAGCATGGTTTCCTGTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGGTCAGCGAGAAGTAATCTTTCCCAGCATGGTTTCCTGTCTCC  837

seq1  GGCACTCTCTGATCACAGTGGAGACAGCCTGCAGTATGGAAAGAACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTCTGATCACAGTGGAGACAGCCTGCAGTATGGAAAGAACTTTG  887

seq1  GGTTTGGGGTATAGCTCAGCGGCAGAATACCTGCCTTGTGTTCTTGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGTATAGCTCAGCGGCAGAATACCTGCCTTGTGTTCTTGAGTC  937

seq1  TCTCTGGGAACAACCCCAGCACCTCAGGAAGGAGAAAGAAAGGGGCAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGAACAACCCCAGCACCTCAGGAAGGAGAAAGAAAGGGGCAAGT  987

seq1  AGGATATTGTGGCTGACATCTGTAATCCTAGCGCTTGGGAAGCTGAAGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTGTGGCTGACATCTGTAATCCTAGCGCTTGGGAAGCTGAAGCA  1037

seq1  GGAGGATGTCTGTCAGTTTGATGCTAGCTAGCCTGGGTATATAGTGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGTCTGTCAGTTTGATGCTAGCTAGCCTGGGTATATAGTGAATT  1087

seq1  C  1101
      |
seq2  C  1088

seq1: chr17_47529599_47530564
seq2: B6Ng01-140E15.g_67_1033

seq1  GAATTCCAGGCCAGACTTTGCCTCCGACAGCTGTTGGACTCCCTAACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGACTTTGCCTCCGACAGCTGTTGGACTCCCTAACCTC  50

seq1  CTGCAGGTCGACTAGATGGCTTCCAGTTATCCCGCAAATGTCCTTCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTCGACTAGATGGCTTCCAGTTATCCCGCAAATGTCCTTCATGC  100

seq1  ACCCAATATAGAAGCTAGGCTACCAGGGAACCTCTCTGCCTTTCTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATATAGAAGCTAGGCTACCAGGGAACCTCTCTGCCTTTCTCTGCC  150

seq1  TCCTTCCATCTGTGCAGCTGGGGAAGTCACCTCAGAGGACAGGAAGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATCTGTGCAGCTGGGGAAGTCACCTCAGAGGACAGGAAGTAGG  200

seq1  ACCAGTGTCACACTAAGTAGGACCAGTGTCACACTTGGCAAATTCTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTCACACTAAGTAGGACCAGTGTCACACTTGGCAAATTCTATCT  250

seq1  GGAACCTGGTGGATTGTTGGTGTTACCTTGAATAGATATAGATTTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGGTGGATTGTTGGTGTTACCTTGAATAGATATAGATTTCACAT  300

seq1  TAAAATACAGTCAACTAACTTATTGTCCTGGAGGTGAAATTTGTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAGTCAACTAACTTATTGTCCTGGAGGTGAAATTTGTTTGCTT  350

seq1  GTTGGAGCAAGGCCCCACAACTGTAGCTCAGGCTAGCCTGGAGCTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGCAAGGCCCCACAACTGTAGCTCAGGCTAGCCTGGAGCTCACTG  400

seq1  TATAGCCCAGGCTAGCAGAACTCCTGCCTCGGGCTCCGGAGCCCTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCAGGCTAGCAGAACTCCTGCCTCGGGCTCCGGAGCCCTGAGAT  450

seq1  CATAAGTATGAACCCAAGTTTTTGTGCATGGGAGAAGGGCTGTTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTATGAACCCAAGTTTTTGTGCATGGGAGAAGGGCTGTTTGTTTT  500

seq1  CATGTTGTGGGACAATTGAGACAGTTTCAGAAGCCCAGGTCAGCTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTGGGACAATTGAGACAGTTTCAGAAGCCCAGGTCAGCTTGAAA  550

seq1  CCCATGGCAATCCTCCTGCCTCAGCTCCCTGAGTGCTGAGTGCACGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCAATCCTCCTGCCTCAGCTCCCTGAGTGCTGAGTGCACGACTG  600

seq1  TGGCCAGCCCCTGGGTGCTTGTATAACATATGTGCACCACTGTGCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCCCTGGGTGCTTGTATAACATATGTGCACCACTGTGCCCAGT  650

seq1  GTGAACTTGAAGTGCGTTTTGCTTTGTTTATTTTTATTTCATGTGTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTGAAGTGCGTTTTGCTTTGTTTATTTTTATTTCATGTGTATGG  700

seq1  GTGTTTTTTTCCTGCATATGTCTATGCATCATGTGTGTGCACTGTCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTTCCTGCATATGTCTATGCATCATGTGTGTGCACTGTCCACC  750

seq1  CGAGGAGACCAGTCCTGTGGCACTGGAGTTACAGATGTTTGTGAACTAC-  799
      |||||||| ||||||||||||||||||| |||||||||||||||||||| 
seq2  CGAGGAGATCAGTCCTGTGGCACTGGAG-TACAGATGTTTGTGAACTACT  799

seq1  CATGT-GGGTGCTGGGAATCAAGCCCAGGTCC-TCTGCTAGAACAACCAG  847
      ||||| |||||||||| ||||||||||||||| |||||||||||||||||
seq2  CATGTGGGGTGCTGGG-ATCAAGCCCAGGTCCTTCTGCTAGAACAACCAG  848

seq1  TGCCCTTACTGG-AGAGCTGTCTCTCAGCCTTTTAGAGTTTTGTAGTTTG  896
      |||||||||||| | ||||||||||||| |||||||||||||| ||||||
seq2  TGCCCTTACTGGAAAAGCTGTCTCTCAGTCTTTTAGAGTTTTGGAGTTTG  898

seq1  TAGTATGTTGCTATAAAGTTCTTGTAAGAAATAGCTTAGGGGCTGTCCAG  946
      ||| ||| ||||| |||||||||||||||||||||| ||||| ||||| |
seq2  TAGAATGGTGCTAAAAAGTTCTTGTAAGAAATAGCTAAGGGGGTGTCC-G  947

seq1  CTGGCAGGATGATGGGATGG  966
      || |||||||||||||||||
seq2  CTTGCAGGATGATGGGATGG  967