BAC Information

Click to search

BAC

Clone NameB6Ng01-140E19
Chromosome17 (Build37)
Map Location 91,686,140 - 91,810,327
singlet/doubletdoublet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235
Downstream geneLOC100043741, LOC100043742, EG640442, LOC627395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E19.bB6Ng01-140E19.g
ACCDH939068DH939069
length1,1801,093
definitionDH939068|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E19, 5' end.DH939069|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,686,140 - 91,687,334)(91,809,205 - 91,810,327)
sequence
gaattcatcagcatggtaattgaagaagctgcagtgccttaaagatgatt
cttaattgttccatcacttggggaccaagccttcaacacaggaacctgtg
aaggacaatttgtatcccaaacctaatattttgcatgtaaaggtagcagt
ggctcactgttgaaggaggacaataaaacaaattaagttccatgcagagg
taatgtagcagttagagaaagatgctagctagtctgcagctaagatggca
gtcttttctgaggattcttatttcacaaaatgctgagtcacttcattcat
ttcaagtcagcaggatagtagctgagaggaagggatcaaccaagtgaggg
caaggtgatttctataacttgacatgttttggtattccaattttacattc
tctagctgtgacaataaaagtgataaaaaataatatagggatagaactat
taaattgtatgatattgtcttccttttacaaaacataagaattttttgaa
agaaaaatagtgctctttccaaattgtatcagtacttttagatgaaaggc
taagtgacaactacaaaatatacatataaaaattgcaaaagaaacaaaac
cacacacaactctgccacaaataatagcatttttcatagcattcttttgc
tttgtatttcttgtcaatacatgtgataaagaccagttccctaaacattt
aggaaaacattaaaactccacttctctataacaatgcccattgctatgtc
acctcaaaccaatgaatctcaacctgtaggtcaagacttctttgggagtt
gaccaaccccttcaaagaaaacacagatatttacattacaatagatataa
gtagcaaaattacagtcttgacataacaaaaacagttttaggtgggccaa
gaaagcacaatgaactctattaaagggtttcagcattaggaagtttgaga
atcactgcttaaatctataaagatcttgatgctagctagtatgctcccct
ggaacaccatatcttagcatcatagcagacgatctgctgcactcgagcag
ttggtaggactctctagaagtcctcagctgctggctggcacccagtggac
tcagaacgaatcaccaccaacctccatccctcaccgaaactcctccctct
gccgtcctttctgctgggcgagtgctagct
gaattctttatatattttggattttatccctctgtcagatgaaggattag
tgaagatattatgccaatctgtaggctgtcattttgtcacgatgtcaggg
tcctttgactttgcttttaggtttcatggggtcctatttattaatgcctg
actttagtgctttattaaaattaggagtaattttaataaagttagaggtc
catcaattatttggcattttaatgcctaatcattctaatgcacaaaatca
cctccagaattcaaagaaattaaggtttatttcatgaaaccatgcatata
tacattttatgtcttttgcagaagaagatgaggaagtaagtctaaaccta
aaaagtacttttggcagaggcaagaaactatactcagagacataaattag
taagtgcatgttcctgtcttatggcatttttagattagaaaatataatct
ttgagtaactgctaacatttccagccctgggaatttgagtaattctctgt
tataactagattatcagcttttcttaatgggcaaattattaacttttaaa
gtaatgcaattctttactcggtgatactatcctgtgcatatcctttcctt
tctatcttatatatttaatgataatgtgagcctacaattcaacagtatat
gaattttctttatattgactttgttatcagcaaataggcaataataaaat
attttgtacaagttaagatgattgttaacagtccctaagacttaaccaac
cttcaaacaggtatctatctgctgagagaggacatgaaagaatggagccc
tgaggtcctcagtttgaactcagaaaacacattttaaaaagcaaattgtg
gtagtatatatttttaatctcatgacttcagagacagcaggctcctaggg
tctactgacctacttgctagcaagtttcagtccaaactcataagaaaaaa
caaattacaggtagataaagacatatctgagaaactacacctgagatata
tgtcctcttgtttcacaagaatctgcatatacacataccacatgactctc
aattctctctcactctgttattaccatagattttacttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91686140_91687334
seq2: B6Ng01-140E19.b_43_1222

seq1  GAATTCATCAGCATGGTAATTGAAGAAGCTGCAGTGCCTTAAAGATGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGCATGGTAATTGAAGAAGCTGCAGTGCCTTAAAGATGATT  50

seq1  CTTAATTGTTCCATCACTTGGGGACCAAGCCTTCAACACAGGAACCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGTTCCATCACTTGGGGACCAAGCCTTCAACACAGGAACCTGTG  100

seq1  AAGGACAATTTGTATCCCAAACCTAATATTTTGCATGTAAAGGTAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAATTTGTATCCCAAACCTAATATTTTGCATGTAAAGGTAGCAGT  150

seq1  GGCTCACTGTTGAAGGAGGACAATAAAACAAATTAAGTTCCATGCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTGTTGAAGGAGGACAATAAAACAAATTAAGTTCCATGCAGAGG  200

seq1  TAATGTAGCAGTTAGAGAAAGATGCTAGCTAGTCTGCAGCTAAGATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGCAGTTAGAGAAAGATGCTAGCTAGTCTGCAGCTAAGATGGCA  250

seq1  GTCTTTTCTGAGGATTCTTATTTCACAAAATGCTGAGTCACTTCATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTGAGGATTCTTATTTCACAAAATGCTGAGTCACTTCATTCAT  300

seq1  TTCAAGTCAGCAGGATAGTAGCTGAGAGGAAGGGATCAACCAAGTGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCAGCAGGATAGTAGCTGAGAGGAAGGGATCAACCAAGTGAGGG  350

seq1  CAAGGTGATTTCTATAACTTGACATGTTTTGGTATTCCAATTTTACATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGATTTCTATAACTTGACATGTTTTGGTATTCCAATTTTACATTC  400

seq1  TCTAGCTGTGACAATAAAAGTGATAAAAAATAATATAGGGATAGAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTGACAATAAAAGTGATAAAAAATAATATAGGGATAGAACTAT  450

seq1  TAAATTGTATGATATTGTCTTCCTTTTACAAAACATAAGAATTTTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTATGATATTGTCTTCCTTTTACAAAACATAAGAATTTTTTGAA  500

seq1  AGAAAAATAGTGCTCTTTCCAAATTGTATCAGTACTTTTAGATGAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAGTGCTCTTTCCAAATTGTATCAGTACTTTTAGATGAAAGGC  550

seq1  TAAGTGACAACTACAAAATATACATATAAAAATTGCAAAAGAAACAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACAACTACAAAATATACATATAAAAATTGCAAAAGAAACAAAAC  600

seq1  CACACACAACTCTGCCACAAATAATAGCATTTTTCATAGCATTCTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAACTCTGCCACAAATAATAGCATTTTTCATAGCATTCTTTTGC  650

seq1  TTTGTATTTCTTGTCAATACATGTGATAAAGACCAGTTCCCTAAACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTCTTGTCAATACATGTGATAAAGACCAGTTCCCTAAACATTT  700

seq1  AGGAAAACATTAAAACTCCACTTCTCTATAACAATGCCCATTGCTATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACATTAAAACTCCACTTCTCTATAACAATGCCCATTGCTATGTC  750

seq1  ACCTCAAACCAATGAATCTCAACCTGTAGGTCAAGACTTCTTTGGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAACCAATGAATCTCAACCTGTAGGTCAAGACTTCTTTGGGAGTT  800

seq1  GACCAACCCCTTCAAAGAAAACACAGATATTTACATTACAATAGATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACCCCTTCAAAGAAAACACAGATATTTACATTACAATAGATATAA  850

seq1  GTAGCAAAATTACAGTCTTGACATAACAAAAAACAGTTTTAGGTGGGCCA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGCAAAATTACAGTCTTGACATAAC-AAAAACAGTTTTAGGTGGGCCA  899

seq1  AGAAAGCACAATGAACTCTATTAAAGGGTTTCAGCATTAGGAAGTTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACAATGAACTCTATTAAAGGGTTTCAGCATTAGGAAGTTTGAG  949

seq1  AATCACTGCTTAAATCTATAAAGATCTTGATGCTAGCTAGTATGCTCCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGCTTAAATCTATAAAGATCTTGATGCTAGCTAGTATGCTCCCC  999

seq1  TGGAGACACCATATCTTAGCATCATAGCAGACGATCTGCTGCACTCAGAG  1050
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGA-ACACCATATCTTAGCATCATAGCAGACGATCTGCTGCACTC-GAG  1047

seq1  CAGTTGGTAAGAACTCTCTAGAAGTCCTACAGCTGCT-GCTGGCACCCCA  1099
      |||||||| || |||||||||||||||| |||||||| ||||||| ||||
seq2  CAGTTGGT-AGGACTCTCTAGAAGTCCT-CAGCTGCTGGCTGGCA-CCCA  1094

seq1  GTGGACTCAGGACCGATCACCACCCAACCTCCAATCCCTCCACCGAATAC  1149
      |||||||||| ||  ||||||| ||||||||| |||||| ||||||| ||
seq2  GTGGACTCAGAACGAATCACCA-CCAACCTCC-ATCCCT-CACCGAA-AC  1140

seq1  TCCTCCCCTTCTGCCCTGTCCTTTCTGCTGGGGCAGAGTGCTAGCT  1195
      |||||||  ||||||  |||||||||||||||   |||||||||||
seq2  TCCTCCC--TCTGCC--GTCCTTTCTGCTGGG--CGAGTGCTAGCT  1180

seq1: chr17_91809205_91810327
seq2: B6Ng01-140E19.g_68_1160 (reverse)

seq1  AAAACAAGTAAAAATTCTTATGTGTAAATGAGAGAGGGAGAGAGAGAGAG  50
      |||||||||||||  || |||| || ||| | |||| ||||||||     
seq2  AAAACAAGTAAAA--TC-TATG-GT-AATAACAGAGTGAGAGAGA-----  40

seq1  AGATATTGAAGAGTTCATGTGTGTATGTGTATATGCAGATTCTTGTGGAA  100
          |||| |||| ||||||| |||||||||||||||||||||||| |||
seq2  ----ATTG-AGAG-TCATGTG-GTATGTGTATATGCAGATTCTTGT-GAA  82

seq1  ACAAGAGGACAATATAATCTCAGGTGTAGTTTCTCAGATATTGTCTTTTA  150
      |||||||||| |||| |||||||||||||||||||||||| |||| ||||
seq2  ACAAGAGGAC-ATAT-ATCTCAGGTGTAGTTTCTCAGATA-TGTC-TTTA  128

seq1  TCTACCCTGTAATTTGTTTTTTTCCTTATTGAGTTTTGGACCTGAAACTT  200
      |||| |||||||||||||||||  |||| |||| |||||| |||||||||
seq2  TCTA-CCTGTAATTTGTTTTTT--CTTA-TGAG-TTTGGA-CTGAAACTT  172

seq1  GCCTAGCAAGTAGGTCAGTAGACCCTAGGAGCCCTGCTGTCTCTGAAGTC  250
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  G-CTAGCAAGTAGGTCAGTAGACCCTAGGAG-CCTGCTGTCTCTGAAGTC  220

seq1  ATGAGATTAAAAATATATACTACCACAATTTGCTTTTTAAAATGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTAAAAATATATACTACCACAATTTGCTTTTTAAAATGTGTTTT  270

seq1  CTGGGTTCAAACTGAGGACCTCAGGGCTCCATTCTTTCATGTCCTCTCTC  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAACTGAGGACCTCAGGGCTCCATTCTTTCATGTCCTCTCTC  320

seq1  AGCAGATAGATACCTGTTTGAAGGTTGGTTAAGTCTTAGGGACTGTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAGATACCTGTTTGAAGGTTGGTTAAGTCTTAGGGACTGTTAAC  370

seq1  AATCATCTTAACTTGTACAAAATATTTTATTATTGCCTATTTGCTGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTTAACTTGTACAAAATATTTTATTATTGCCTATTTGCTGATAA  420

seq1  CAAAGTCAATATAAAGAAAATTCATATACTGTTGAATTGTAGGCTCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAATATAAAGAAAATTCATATACTGTTGAATTGTAGGCTCACAT  470

seq1  TATCATTAAATATATAAGATAGAAAGGAAAGGATATGCACAGGATAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAAATATATAAGATAGAAAGGAAAGGATATGCACAGGATAGTAT  520

seq1  CACCGAGTAAAGAATTGCATTACTTTAAAAGTTAATAATTTGCCCATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGTAAAGAATTGCATTACTTTAAAAGTTAATAATTTGCCCATTAA  570

seq1  GAAAAGCTGATAATCTAGTTATAACAGAGAATTACTCAAATTCCCAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGATAATCTAGTTATAACAGAGAATTACTCAAATTCCCAGGGC  620

seq1  TGGAAATGTTAGCAGTTACTCAAAGATTATATTTTCTAATCTAAAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTTAGCAGTTACTCAAAGATTATATTTTCTAATCTAAAAATGC  670

seq1  CATAAGACAGGAACATGCACTTACTAATTTATGTCTCTGAGTATAGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACAGGAACATGCACTTACTAATTTATGTCTCTGAGTATAGTTTC  720

seq1  TTGCCTCTGCCAAAAGTACTTTTTAGGTTTAGACTTACTTCCTCATCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGCCAAAAGTACTTTTTAGGTTTAGACTTACTTCCTCATCTTC  770

seq1  TTCTGCAAAAGACATAAAATGTATATATGCATGGTTTCATGAAATAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAAAGACATAAAATGTATATATGCATGGTTTCATGAAATAAACC  820

seq1  TTAATTTCTTTGAATTCTGGAGGTGATTTTGTGCATTAGAATGATTAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTTGAATTCTGGAGGTGATTTTGTGCATTAGAATGATTAGGC  870

seq1  ATTAAAATGCCAAATAATTGATGGACCTCTAACTTTATTAAAATTACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGCCAAATAATTGATGGACCTCTAACTTTATTAAAATTACTCC  920

seq1  TAATTTTAATAAAGCACTAAAGTCAGGCATTAATAAATAGGACCCCATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAATAAAGCACTAAAGTCAGGCATTAATAAATAGGACCCCATGA  970

seq1  AACCTAAAAGCAAAGTCAAAGGACCCTGACATCGTGACAAAATGACAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAAGCAAAGTCAAAGGACCCTGACATCGTGACAAAATGACAGCC  1020

seq1  TACAGATTGGCATAATATCTTCACTAATCCTTCATCTGACAGAGGGATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTGGCATAATATCTTCACTAATCCTTCATCTGACAGAGGGATAA  1070

seq1  AATCCAAAATATATAAAGAATTC  1123
      |||||||||||||||||||||||
seq2  AATCCAAAATATATAAAGAATTC  1093