BAC Information

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BAC

Clone NameB6Ng01-140G19
Chromosome17 (Build37)
Map Location 16,123,778 - 16,218,178
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G19.bB6Ng01-140G19.g
ACCDH939159DH939160
length1,0741,036
definitionDH939159|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G19, 5' end.DH939160|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,217,093 - 16,218,178)(16,123,778 - 16,124,822)
sequence
gaattcaagtcaagtacaaaagtggaggtatgaataaaataacatactga
ctttgttggattgttcagagaatttgagagtcaacacggctaggcactgt
gtgttacagacatgatgaaattaaaaatattcgaaggcctagaatcctgg
agaaataaaatcgggttgctgctgaggccatatgaaacacatgaagacac
tgatcgttgtccacaaatagaaaagagaattgtccatcaccacaatttaa
atgatagtcttctgataatctatggtgctacgtctggacactaagcaaat
gggaccttcaccaagactttgagatcacaagttttaaaaaacctagggag
ttttcagtgaacttcctctactggtgtaaaaagaaagtatgacaacagga
aaatgagggaaggaacttcccctccaaggggcgccagccttacgtatagc
attcctatattgatacaaaaccagtatgtttgactagataggctctctga
ccctgtgaatacaaagcaatcgagatagcgaatgtgcagatctgtacaat
gtgatcatccttgtccacataagcctggtagggaaaaaaaacataaatag
cagcagctataaggctgaaaattaaaatagctaacatttattgaaagtgc
ttcgattgctttctgtgggttattgtatttaatcttcacaacagtccctc
tgagatagagatcactgatatctagcaaagccctgctactgtgtcttgtg
gaaataagcacttttctaagtgcctttgttgacaatctcttccaaggctc
atcctgccctgatttctgagatatgcgcttgcttatctttttcctggcta
taaacagtttgaaaatggatatccaacaacaaaataactgtgcttagccc
ttaagttagagccaataaatatttgctgattggaactggattatttaaat
tggagatacatcacaatgcataaaaccataactgctatgtttgatgatgg
tgtatcaagtattgcttaaccttacaggatggctctaaactaagccaggt
actcataatgctatatctaccata
gaattcagttgcccgttaaaatcatttaagaacaggtccaccaacaactg
tacaaaggcacgtagggctgaacccagggccagaatgtagttgcttgtac
tctagtgataattatgttctccccaaaaactgtttgcatgatatatttac
agtagttcctgggatgagaaataacatctctttccttccttagatctcaa
tcattctgttctacaaagctttcttaaggcatttcccctttcattttcta
ttttcctctttttgaccacctaaatgctggaatgatgaaagaaatccaca
gcattgtatggcaacacagagatcattttctgtgggaaaaatttaatgtt
gagatttgctagtccaattggtggttagatttttggccaatgaacggtct
attgtgttcatgcatggcaagactctcaataaaataaatggagtggtttt
tgtgtttgtaccggctagttttgtgtcaacttgacacagctggagttatc
gcagagaaaggagcttgagttgaggaaatgcctccatgagatccaaatgt
aaggcattttctcaattagtgatcaagggggaaaggcccctggtgggtgg
gaccatttctgggctggtagccttggttctataagagagcaggctgaaca
agccaggggaagcaagccagtaaggaacatccctccatggcctctgcatc
agctcctgcttcctgacctgcttgagttccagtcctgacttcctttggtg
atgaacagcagtatggaagtgaaagccaaataaaccttttcctccccaat
ttgcttcttggtcatgatgtttgtgcagaaatagaaaccctgactaagac
agtgttacaggatgtacactgaaaagcataaagttgttaatttctccttt
ctatttttgtctctcagctctgaatgagttatttgatttggtctcttatg
atatattcaatgattgtgagcagatttgtaagaatgtaaatgtgagcttc
actgctctgtagatcatgatggagtgagtggtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16217093_16218178
seq2: B6Ng01-140G19.b_46_1119 (reverse)

seq1  TATGGTAGAATATAGCATATAGAAAGTAAACTGGCTTAAGTTTAGAGCCA  50
      |||||||| |||||||||   |  ||| | ||||||| ||||||||||||
seq2  TATGGTAG-ATATAGCATTATG--AGT-ACCTGGCTT-AGTTTAGAGCCA  45

seq1  TCTGGTAAAGTTTAAGCAATACTTTGATGACACCATCATCAAACATAGGC  100
      ||  || ||| ||||||||||| ||||| |||||||||||||||||| ||
seq2  TCCTGT-AAGGTTAAGCAATAC-TTGAT-ACACCATCATCAAACATA-GC  91

seq1  AGTTATGGTTTTATGCATTTGTGATGTATCTTCCAATTTAAATTAATCCA  150
      ||||||||||||||||| |||||||||||| ||||||||||| |||||||
seq2  AGTTATGGTTTTATGCA-TTGTGATGTATC-TCCAATTTAAA-TAATCCA  138

seq1  GTTCCAATCAGCAAATATTTATTGGCTCTAACTTAAGGGCTAAGCACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATCAGCAAATATTTATTGGCTCTAACTTAAGGGCTAAGCACAGT  188

seq1  TATTTTGTTGTTGGATATCCATTTTCAAACTGTTTATAGCCAGGAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTGTTGGATATCCATTTTCAAACTGTTTATAGCCAGGAAAAAG  238

seq1  ATAAGCAAGCGCATATCTCAGAAATCAGGGCAGGATGAGCCTTGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAGCGCATATCTCAGAAATCAGGGCAGGATGAGCCTTGGAAGAG  288

seq1  ATTGTCAACAAAGGCACTTAGAAAAGTGCTTATTTCCACAAGACACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACAAAGGCACTTAGAAAAGTGCTTATTTCCACAAGACACAGTA  338

seq1  GCAGGGCTTTGCTAGATATCAGTGATCTCTATCTCAGAGGGACTGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTTTGCTAGATATCAGTGATCTCTATCTCAGAGGGACTGTTGTG  388

seq1  AAGATTAAATACAATAACCCACAGAAAGCAATCGAAGCACTTTCAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAATACAATAACCCACAGAAAGCAATCGAAGCACTTTCAATAAA  438

seq1  TGTTAGCTATTTTAATTTTCAGCCTTATAGCTGCTGCTATTTATGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTATTTTAATTTTCAGCCTTATAGCTGCTGCTATTTATGTTTTT  488

seq1  TTTCCCTACCAGGCTTATGTGGACAAGGATGATCACATTGTACAGATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTACCAGGCTTATGTGGACAAGGATGATCACATTGTACAGATCTG  538

seq1  CACATTCGCTATCTCGATTGCTTTGTATTCACAGGGTCAGAGAGCCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCGCTATCTCGATTGCTTTGTATTCACAGGGTCAGAGAGCCTATC  588

seq1  TAGTCAAACATACTGGTTTTGTATCAATATAGGAATGCTATACGTAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAACATACTGGTTTTGTATCAATATAGGAATGCTATACGTAAGGC  638

seq1  TGGCGCCCCTTGGAGGGGAAGTTCCTTCCCTCATTTTCCTGTTGTCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCCCCTTGGAGGGGAAGTTCCTTCCCTCATTTTCCTGTTGTCATAC  688

seq1  TTTCTTTTTACACCAGTAGAGGAAGTTCACTGAAAACTCCCTAGGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTACACCAGTAGAGGAAGTTCACTGAAAACTCCCTAGGTTTTT  738

seq1  TAAAACTTGTGATCTCAAAGTCTTGGTGAAGGTCCCATTTGCTTAGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGTGATCTCAAAGTCTTGGTGAAGGTCCCATTTGCTTAGTGTC  788

seq1  CAGACGTAGCACCATAGATTATCAGAAGACTATCATTTAAATTGTGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTAGCACCATAGATTATCAGAAGACTATCATTTAAATTGTGGTGA  838

seq1  TGGACAATTCTCTTTTCTATTTGTGGACAACGATCAGTGTCTTCATGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATTCTCTTTTCTATTTGTGGACAACGATCAGTGTCTTCATGTGT  888

seq1  TTCATATGGCCTCAGCAGCAACCCGATTTTATTTCTCCAGGATTCTAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGGCCTCAGCAGCAACCCGATTTTATTTCTCCAGGATTCTAGGC  938

seq1  CTTCGAATATTTTTAATTTCATCATGTCTGTAACACACAGTGCCTAGCCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAATATTTTTAATTTCATCATGTCTGTAACACACAGTGCCTAGCCG  988

seq1  TGTTGACTCTCAAATTCTCTGAACAATCCAACAAAGTCAGTATGTTATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTCTCAAATTCTCTGAACAATCCAACAAAGTCAGTATGTTATTT  1038

seq1  TATTCATACCTCCACTTTTGTACTTGACTTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TATTCATACCTCCACTTTTGTACTTGACTTGAATTC  1074

seq1: chr17_16123778_16124822
seq2: B6Ng01-140G19.g_66_1101

seq1  GAATTCAGTTGCCCGTTAAAATCATTTAAGAACAGGTCCACCAACAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGCCCGTTAAAATCATTTAAGAACAGGTCCACCAACAACTG  50

seq1  TACAAAGGCACGTAGGGCTGAACCCAGGGCCAGAATGTAGTTGCTTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGCACGTAGGGCTGAACCCAGGGCCAGAATGTAGTTGCTTGTAC  100

seq1  TCTAGTGATAATTATGTTCTCCCCAAAAACTGTTTGCATGATATATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGATAATTATGTTCTCCCCAAAAACTGTTTGCATGATATATTTAC  150

seq1  AGTAGTTCCTGGGATGAGAAATAACATCTCTTTCCTTCCTTAGATCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCCTGGGATGAGAAATAACATCTCTTTCCTTCCTTAGATCTCAA  200

seq1  TCATTCTGTTCTACAAAGCTTTCTTAAGGCATTTCCCCTTTCATTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTTCTACAAAGCTTTCTTAAGGCATTTCCCCTTTCATTTTCTA  250

seq1  TTTTCCTCTTTTTGACCACCTAAATGCTGGAATGATGAAAGAAATCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTTTGACCACCTAAATGCTGGAATGATGAAAGAAATCCACA  300

seq1  GCATTGTATGGCAACACAGAGATCATTTTCTGTGGGAAAAATTTAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTATGGCAACACAGAGATCATTTTCTGTGGGAAAAATTTAATGTT  350

seq1  GAGATTTGCTAGTCCAATTGGTGGTTAGATTTTTGGCCAATGAACGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGCTAGTCCAATTGGTGGTTAGATTTTTGGCCAATGAACGGTCT  400

seq1  ATTGTGTTCATGCATGGCAAGACTCTCAATAAAATAAATGGAGTGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTCATGCATGGCAAGACTCTCAATAAAATAAATGGAGTGGTTTT  450

seq1  TGTGTTTGTACCGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTACCGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATC  500

seq1  GCAGAGAAAGGAGCTTGAGTTGAGGAAATGCCTCCATGAGATCCAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAAGGAGCTTGAGTTGAGGAAATGCCTCCATGAGATCCAAATGT  550

seq1  AAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTGGTGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTGGTGGGTGG  600

seq1  GACCATTTCTGGGCTGGTAGCCTTGGTTCTATAAGAGAGCAGGCTGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTCTGGGCTGGTAGCCTTGGTTCTATAAGAGAGCAGGCTGAACA  650

seq1  AGCCAGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATC  700

seq1  AGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTG  750

seq1  ATGAACAGCAGTATGGAAGTGAAAGCCAAATAAACCTTTTCCTCCCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGCAGTATGGAAGTGAAAGCCAAATAAACCTTTTCCTCCCCAAT  800

seq1  TTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACCCTGACTAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACCCTGACTAAGAC  850

seq1  AGTGTTACAGGATGTACACTGAAAAGCATAAAGTTGTTAATTTCTCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACAGGATGTACACTGAAAAGCATAAAGTTGTTAATTTCTCCTTT  900

seq1  CTATTTTTGTCTCTCAAGCTCTTGAATGAGTTATTTTGATTTGGTCCCTT  950
      ||||||||||||||| ||||| ||||||||||| |||||||||||| |||
seq2  CTATTTTTGTCTCTC-AGCTC-TGAATGAGTTA-TTTGATTTGGTCTCTT  947

seq1  ATGAATATATTCAATTGATTGTGAGCAGATTTGTAAAGAATTGTAAATGT  1000
      ||| |||||||||| ||||||||||||||||||| ||||| |||||||||
seq2  ATG-ATATATTCAA-TGATTGTGAGCAGATTTGT-AAGAA-TGTAAATGT  993

seq1  GAGCTTCACCTGCTCTGTAGATCAATGAT-GAGTGTAGTGGTGTTG  1045
      |||||||| |||||||||||||| ||||| ||||| ||||||||||
seq2  GAGCTTCA-CTGCTCTGTAGATC-ATGATGGAGTG-AGTGGTGTTG  1036