BAC Information

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BAC

Clone NameB6Ng01-140O03
Chromosome17 (Build37)
Map Location 80,630,467 - 80,786,457
singlet/doubletdoublet
Overlap geneDhx57, Morn2
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6
Downstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140O03.bB6Ng01-140O03.g
ACCDH939492DH939493
length1,0511,048
definitionDH939492|Mus musculus domesticus DNA, BAC clone: B6Ng01-140O03, 5' end.DH939493|Mus musculus domesticus DNA, BAC clone: B6Ng01-140O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,785,400 - 80,786,457)(80,630,467 - 80,631,515)
sequence
gaattcaaacacccttttctactcttcaagtaaaaacactgaccctatgg
aaacactaaagatgtctggaaacctgataaatcgactagatattttaatt
tttccatttgataacagaaatgaggccatagctacctagcatgcctttac
ttctagttagaaaggagcactttcccactatatccacacagagaaaaagt
attctctcagcttcagtacatctgggtactcatgagatgaaaaaaaagta
cctgggtagggcaaactcttttcagggatcggcttaaactccctatgaac
agactcgcaacttccctcaaactcccgctttgctttcggctctcagaact
cctgcctccctcaagttcagatcatccctgcttggcagagtggcgcccta
aatgttaataagtcacatcctggctcttgttcgttctttccctgtcttct
gctatgtgggagcctagaagcccttccttctggtttagggcagggagcag
gggttcagttgctgttgtctattctcaactgttttccctcatgaaaattt
ctcaacaaagtcattagtctacaattaaaacctcacctcacattttctct
ctcacttacatctgatctctccaaagcccaacatgtcatacttttaggtg
cccacatgcaactgttgggagtttacctggaaatgggaaagctttgatgt
caccaccagccccaaggaccacagaaatcttcaccagttgagttcccatt
tctgaaacaaatgccaaaatcgccctgtctagtttccacaaactcagctc
agacttttttttttaactgctcttcttacaaaatgtatcttccctttgtt
tccagtacaaatgtctacatttctgaatattaattactaagtaatagtgg
ctaactgttttcaaattcagaattctactgtagcaatggttcaagctcat
tttaccttttaaagacaattttagctgacttttataatcctcaacaacta
ttaggatacctgactcttccaaaggtgtaataagtaagggggaaaaaacc
c
gaattcatacaggagggcggagaagcatctgattaccaggtgcttggttc
tgggtccttattgtgtgggacggtcccttaaaatggtcccttagtgctca
tcatgtggtggcctcctggtgtgttttggtgcctgttttccaaagagcat
gccacactttgccattcttcctggcagtcttagagacaacccctgaaacc
agtgggtttagagacaacccctgaaaccagtgggtttccgggaaacttgg
tggagagaagagttactgagcctagaaattaaagttcttgtttcggtttt
acatagtagccaaagtctactaggttggattttgttcagttagcatggag
ataagataagggtgtgtgtgtgtgttttatacatcaaaatgtggccctaa
ggatgataactatctgcaagagtcaagttataagtgattttaaaaaagat
cagaaatgagagatgatatttttaaattgttctccatccacacatatttg
tacatatcacttcttggtctttacacttcagtacttagcagcttactcga
tagcacatgcttagtatatctatttgtgcacatgcctgcacctgtatgta
tgtgtgtgtgtgtgcgcgcgcgagtgtgcgagtgtgtgtgtgtgtcagag
gacagcatgtacaagtttcagttggtcttctccctctgtttgtttgggtc
tagggatccagctcaaagtcaggttcggcagctttggcaacttcctcttt
acccagtgagcagtctgtcagcatccacagcacacgtttctaagagttgc
ttttggcggaggttttcgtgttagtattctaaatgtttacatctttagat
atgtctactggcacaatttttatttgaataataagctatttatactttat
aacaacggttcttatttcatttggtttaaataggtttctttttcctcttg
ggcatgctaacatttggactggattttttttttgggtctacggctttgga
aatcagtctctctttacacctaggggctgagaataactcaggctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80785400_80786457
seq2: B6Ng01-140O03.b_43_1093 (reverse)

seq1  GGGTTTTTTCCCCCCTACTTATTTACACCTTTGGAAGAGTCAGGTATACC  50
      |||||||||||||| |||||| ||||||||||||||||||||||||| | 
seq2  GGGTTTTTTCCCCCTTACTTA-TTACACCTTTGGAAGAGTCAGGTATCCT  49

seq1  TATAGTATGTTGAGGATTATAAAAGTCAGCTAAAATTGTCTTTAAAAAGG  100
       ||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  AATAGT-TGTTGAGGATTATAAAAGTCAGCTAAAATTGTCTTT-AAAAGG  97

seq1  TGAAAATGAGCTTGGAACCATTGCTACAGTAGAATTCTGTATTTTGAAAA  150
      | ||||||||||| ||||||||||||||||||||||||| | ||||||||
seq2  T-AAAATGAGCTT-GAACCATTGCTACAGTAGAATTCTG-AATTTGAAAA  144

seq1  CAGTTAGCCACTAATTACTTAGTAATTAATATTCAGAAATGTAGACATTT  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCCACT-ATTACTTAGTAATTAATATTCAGAAATGTAGACATTT  193

seq1  GTACTGGAAACAAAGGGAAGATACATTTTGTAAGAAGAGCAGTTAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAAACAAAGGGAAGATACATTTTGTAAGAAGAGCAGTTAAAAAA  243

seq1  AAAAGTCTGAGCTGAGTTTGTGGAAACTAGACAGGGCGATTTTGGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTGAGCTGAGTTTGTGGAAACTAGACAGGGCGATTTTGGCATTT  293

seq1  GTTTCAGAAATGGGAACTCAACTGGTGAAGATTTCTGTGGTCCTTGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAAATGGGAACTCAACTGGTGAAGATTTCTGTGGTCCTTGGGGC  343

seq1  TGGTGGTGACATCAAAGCTTTCCCATTTCCAGGTAAACTCCCAACAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGACATCAAAGCTTTCCCATTTCCAGGTAAACTCCCAACAGTTG  393

seq1  CATGTGGGCACCTAAAAGTATGACATGTTGGGCTTTGGAGAGATCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGCACCTAAAAGTATGACATGTTGGGCTTTGGAGAGATCAGATG  443

seq1  TAAGTGAGAGAGAAAATGTGAGGTGAGGTTTTAATTGTAGACTAATGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGAGAGAAAATGTGAGGTGAGGTTTTAATTGTAGACTAATGACT  493

seq1  TTGTTGAGAAATTTTCATGAGGGAAAACAGTTGAGAATAGACAACAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGAAATTTTCATGAGGGAAAACAGTTGAGAATAGACAACAGCAA  543

seq1  CTGAACCCCTGCTCCCTGCCCTAAACCAGAAGGAAGGGCTTCTAGGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCCTGCTCCCTGCCCTAAACCAGAAGGAAGGGCTTCTAGGCTCC  593

seq1  CACATAGCAGAAGACAGGGAAAGAACGAACAAGAGCCAGGATGTGACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCAGAAGACAGGGAAAGAACGAACAAGAGCCAGGATGTGACTTA  643

seq1  TTAACATTTAGGGCGCCACTCTGCCAAGCAGGGATGATCTGAACTTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTAGGGCGCCACTCTGCCAAGCAGGGATGATCTGAACTTGAGG  693

seq1  GAGGCAGGAGTTCTGAGAGCCGAAAGCAAAGCGGGAGTTTGAGGGAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAGTTCTGAGAGCCGAAAGCAAAGCGGGAGTTTGAGGGAAGTT  743

seq1  GCGAGTCTGTTCATAGGGAGTTTAAGCCGATCCCTGAAAAGAGTTTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTCTGTTCATAGGGAGTTTAAGCCGATCCCTGAAAAGAGTTTGCCC  793

seq1  TACCCAGGTACTTTTTTTTCATCTCATGAGTACCCAGATGTACTGAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGTACTTTTTTTTCATCTCATGAGTACCCAGATGTACTGAAGCT  843

seq1  GAGAGAATACTTTTTCTCTGTGTGGATATAGTGGGAAAGTGCTCCTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATACTTTTTCTCTGTGTGGATATAGTGGGAAAGTGCTCCTTTCT  893

seq1  AACTAGAAGTAAAGGCATGCTAGGTAGCTATGGCCTCATTTCTGTTATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGTAAAGGCATGCTAGGTAGCTATGGCCTCATTTCTGTTATCA  943

seq1  AATGGAAAAATTAAAATATCTAGTCGATTTATCAGGTTTCCAGACATCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAATTAAAATATCTAGTCGATTTATCAGGTTTCCAGACATCTT  993

seq1  TAGTGTTTCCATAGGGTCAGTGTTTTTACTTGAAGAGTAGAAAAGGGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTCCATAGGGTCAGTGTTTTTACTTGAAGAGTAGAAAAGGGTGT  1043

seq1  TTGAATTC  1058
      ||||||||
seq2  TTGAATTC  1051

seq1: chr17_80630467_80631515
seq2: B6Ng01-140O03.g_69_1116

seq1  GAATTCATACAGGAGGGCGGAGAAGCATCTGATTACCAGGTGCTTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGGGCGGAGAAGCATCTGATTACCAGGTGCTTGGTTC  50

seq1  TGGGTCCTTATTGTGTGGGACGGTCCCTTAAAATGGTCCCTTAGTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTATTGTGTGGGACGGTCCCTTAAAATGGTCCCTTAGTGCTCA  100

seq1  TCATGTGGTGGCCTCCTGGTGTGTTTTGGTGCCTGTTTTCCAAAGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTGGCCTCCTGGTGTGTTTTGGTGCCTGTTTTCCAAAGAGCAT  150

seq1  GCCACACTTTGCCATTCTTCCTGGCAGTCTTAGAGACAACCCCTGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTTTGCCATTCTTCCTGGCAGTCTTAGAGACAACCCCTGAAACC  200

seq1  AGTGGGTTTAGAGACAACCCCTGAAACCAGTGGGTTTCCGGGAAACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTTAGAGACAACCCCTGAAACCAGTGGGTTTCCGGGAAACTTGG  250

seq1  TGGAGAGAAGAGTTACTGAGCCTAGAAATTAAAGTTCTTGTTTCGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAGAGTTACTGAGCCTAGAAATTAAAGTTCTTGTTTCGGTTTT  300

seq1  ACATAGTAGCCAAAGTCTACTAGGTTGGATTTTGTTCAGTTAGCATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGCCAAAGTCTACTAGGTTGGATTTTGTTCAGTTAGCATGGAG  350

seq1  ATAAGATAAGGGTGTGTGTGTGTGTTTTATACATCAAAATGTGGCCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAAGGGTGTGTGTGTGTGTTTTATACATCAAAATGTGGCCCTAA  400

seq1  GGATGATAACTATCTGCAAGAGTCAAGTTATAAGTGATTTTAAAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATAACTATCTGCAAGAGTCAAGTTATAAGTGATTTTAAAAAAGAT  450

seq1  CAGAAATGAGAGATGATATTTTTAAATTGTTCTCCATCCACACATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAGAGATGATATTTTTAAATTGTTCTCCATCCACACATATTTG  500

seq1  TACATATCACTTCTTGGTCTTTACACTTCAGTACTTAGCAGCTTACTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCACTTCTTGGTCTTTACACTTCAGTACTTAGCAGCTTACTCGA  550

seq1  TAGCACATGCTTAGTATATCTATTTGTGCACATGCCTGCACCTGTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATGCTTAGTATATCTATTTGTGCACATGCCTGCACCTGTATGTA  600

seq1  TGTGTGTGTGTGTGCGCGCGCGAGTGTGCGAGTGTGTGTGTGTGTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGCGCGCGCGAGTGTGCGAGTGTGTGTGTGTGTCAGAG  650

seq1  GACAGCATGTACAAGTTTCAGTTGGTCTTCTCCCTCTG-TTGTTTGGGTC  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACAGCATGTACAAGTTTCAGTTGGTCTTCTCCCTCTGTTTGTTTGGGTC  700

seq1  TAGGGATCCAGCTC-AAGTCAGGTTCGGCAGCTTTGGCAACTTC--CCTT  746
      |||||||||||||| |||||||||||||||||||||||||||||  | ||
seq2  TAGGGATCCAGCTCAAAGTCAGGTTCGGCAGCTTTGGCAACTTCCTCTTT  750

seq1  ACCCAGTGAGCAGTCTGTCAGCA-CCACAGCACACGTTTCTAAGAGTTGC  795
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCCAGTGAGCAGTCTGTCAGCATCCACAGCACACGTTTCTAAGAGTTGC  800

seq1  -TCTGGCGGAGG-TTTCGTGTTAGTATTCTAAAATGTTTACATCTTTAGA  843
       | ||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TTTTGGCGGAGGTTTTCGTGTTAGTATTCT-AAATGTTTACATCTTTAGA  849

seq1  TATGTCTACTGGCACAATTTTTATTTGAATAATAAGCTATTTATACTTTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTACTGGCACAATTTTTATTTGAATAATAAGCTATTTATACTTTA  899

seq1  TAAACAACGGTTCCTTATTTCATTTTGTTTAAATAGGTTTCTTTT--CTC  941
      | |||||||||| |||||||||||| |||||||||||||||||||  |||
seq2  T-AACAACGGTT-CTTATTTCATTTGGTTTAAATAGGTTTCTTTTTCCTC  947

seq1  TTGGCAATGCTAACATTTTGGACTGGATTTTTTTTTTGGGTCTACAGCTT  991
      ||||  ||||||||| ||||||||||||||||||||||||||||| || |
seq2  TTGGGCATGCTAACA-TTTGGACTGGATTTTTTTTTTGGGTCTACGGC-T  995

seq1  TTGGGAATCAGTTCTCTCTTTACAATCTAGGTGCTGAGAATTAAACTCAG  1041
      |||| |||||| ||||||||||| | ||||| |||||||||  |||||| 
seq2  TTGGAAATCAG-TCTCTCTTTAC-ACCTAGGGGCTGAGAAT--AACTCA-  1040

seq1  GGCTGCAG  1049
      ||||||||
seq2  GGCTGCAG  1048