BAC Information

Click to search

BAC

Clone NameB6Ng01-141B23
Chromosome17 (Build37)
Map Location 87,690,261 - 87,863,921
singlet/doubletdoublet
Overlap geneTtc7, 1700011E24Rik, Calm2
Upstream genePrkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2
Downstream geneLOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B23.bB6Ng01-141B23.g
ACCDH939663DH939664
length796998
definitionDH939663|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B23, 5' end.DH939664|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,863,126 - 87,863,921)(87,690,261 - 87,691,258)
sequence
gaattccagtctctctgcggatcctgagccctctgaggggcctaacaaga
actttgcagacattctttgcctgctaaagaaaccctgactacacagctgg
ttccttcaccagggctccgagtttttctaccaattcctttctactcctcc
tttgtgactttgcttcatgtccattagaaggggaaagagagataatttct
gcttcttcgagagaggccaagatgaagccaaacttctaaaaagatgggga
ctcattatttaatataatttcaggattagccttgggtatttcagtggagg
ggctaaaggaaaggctctctcaaacgagattcatttctacctcccaccaa
aggagaagggagacaaatactggctcagtgggggttcaggttgcagctta
attcctcatctgcccagagaaacaacccacagggggaaaaaaaggaggca
tcaggcttgctggtaaactcccctacctctgagtcatcctggtgcccaaa
tgtttaaatgatgtttaaaagagaaattcagaaacacagtgtcgttgtca
ttgtcattgtcatcaggacaaacagacgctgcccaggcaagctcagaaac
ccagcttcaaaggtggcttcattcaaaaaccctccaattgaggaccagga
ctgttcgcattatccatcatgggatctggtccaggccagtgcccatacga
tcaatcaacgtctcaaacatctctttaggatgactactcagctacagtca
tggattaaagatgcgagagagagagagagagagagagagagagaga
gaattcttgcaggcacccttctacttggccaggatgtgtgatcctgactg
gttaggacgacagaccaagaagacttaaaattctgacttttaatgttgcc
aagtgaagacattagagaaatcacagtatcatagtggaactatacggtta
atcgttgctccataagagagaaagataccgtcccggtagcgtttggctgc
tctgttgtaaactgtcattagtccacagggatctgccaacagcaacaccc
actctttatggcctgagtgtgtccctccaagtcttggtgccctttcaccc
atgaacacagtcataatcgctgcccgtggcctgtatttatcttgcttctc
tctcaggcagttcagagctgtgttctagactttgccctattaatgccctt
agcctccctgggacaggaggcaggggccaggtgttattatctctatctac
ttcaccacaaggaagatggggctgactgggggggacatgagcctgtagct
taggacctctccatgggaaggcaaaacacagctgcggagctctgtgggct
ggatcctgttggggatgtgttaccccgaatcctggctggagaaactaaca
aatggccttttaaaaagtcagcctttgagaatttaaggtagtcaaaacgg
aataggcgtgtaggtattgcaaggcattgtgggaacttcacagaagggag
cttctggaactggggagggtctgagtgactagatggcagactgggcagca
caggaaagggttctgagtgagcacggacaataaaggatagggaattcatc
aatcctagagatttcatgggaatggagaatggaagggtgtcttccatggg
gcctggctttgtctcttcctttctctcatacttggccccttaaaagagac
agtgctgatgagcatggaggagggtctcctggaccacagaaaccctgaca
tgcctacccactgcaaactgggcttctccagcagtgggaaaggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87863126_87863921
seq2: B6Ng01-141B23.b_47_842 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATCTTTAATCCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATCTTTAATCCATGAC  50

seq1  TGTAGCTGAGTAGTCATCCTAAAGAGATGTTTGAGACGTTGATTGATCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGAGTAGTCATCCTAAAGAGATGTTTGAGACGTTGATTGATCGT  100

seq1  ATGGGCACTGGCCTGGACCAGATCCCATGATGGATAATGCGAACAGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACTGGCCTGGACCAGATCCCATGATGGATAATGCGAACAGTCCT  150

seq1  GGTCCTCAATTGGAGGGTTTTTGAATGAAGCCACCTTTGAAGCTGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCAATTGGAGGGTTTTTGAATGAAGCCACCTTTGAAGCTGGGTTT  200

seq1  CTGAGCTTGCCTGGGCAGCGTCTGTTTGTCCTGATGACAATGACAATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTGCCTGGGCAGCGTCTGTTTGTCCTGATGACAATGACAATGAC  250

seq1  AACGACACTGTGTTTCTGAATTTCTCTTTTAAACATCATTTAAACATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACACTGTGTTTCTGAATTTCTCTTTTAAACATCATTTAAACATTTG  300

seq1  GGCACCAGGATGACTCAGAGGTAGGGGAGTTTACCAGCAAGCCTGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGGATGACTCAGAGGTAGGGGAGTTTACCAGCAAGCCTGATGCC  350

seq1  TCCTTTTTTTCCCCCTGTGGGTTGTTTCTCTGGGCAGATGAGGAATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTTCCCCCTGTGGGTTGTTTCTCTGGGCAGATGAGGAATTAAG  400

seq1  CTGCAACCTGAACCCCCACTGAGCCAGTATTTGTCTCCCTTCTCCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACCTGAACCCCCACTGAGCCAGTATTTGTCTCCCTTCTCCTTTGG  450

seq1  TGGGAGGTAGAAATGAATCTCGTTTGAGAGAGCCTTTCCTTTAGCCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTAGAAATGAATCTCGTTTGAGAGAGCCTTTCCTTTAGCCCCTC  500

seq1  CACTGAAATACCCAAGGCTAATCCTGAAATTATATTAAATAATGAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATACCCAAGGCTAATCCTGAAATTATATTAAATAATGAGTCCC  550

seq1  CATCTTTTTAGAAGTTTGGCTTCATCTTGGCCTCTCTCGAAGAAGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTAGAAGTTTGGCTTCATCTTGGCCTCTCTCGAAGAAGCAGAA  600

seq1  ATTATCTCTCTTTCCCCTTCTAATGGACATGAAGCAAAGTCACAAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTCTTTCCCCTTCTAATGGACATGAAGCAAAGTCACAAAGGAG  650

seq1  GAGTAGAAAGGAATTGGTAGAAAAACTCGGAGCCCTGGTGAAGGAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAAAGGAATTGGTAGAAAAACTCGGAGCCCTGGTGAAGGAACCAG  700

seq1  CTGTGTAGTCAGGGTTTCTTTAGCAGGCAAAGAATGTCTGCAAAGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGTCAGGGTTTCTTTAGCAGGCAAAGAATGTCTGCAAAGTTCTT  750

seq1  GTTAGGCCCCTCAGAGGGCTCAGGATCCGCAGAGAGACTGGAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCCCTCAGAGGGCTCAGGATCCGCAGAGAGACTGGAATTC  796

seq1: chr17_87690261_87691258
seq2: B6Ng01-141B23.g_68_1065

seq1  GAATTCTTGCAGGCACCCTTCTACTTGGCCAGGATGTGTGATCCTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGGCACCCTTCTACTTGGCCAGGATGTGTGATCCTGACTG  50

seq1  GTTAGGACGACAGACCAAGAAGACTTAAAATTCTGACTTTTAATGTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGACGACAGACCAAGAAGACTTAAAATTCTGACTTTTAATGTTGCC  100

seq1  AAGTGAAGACATTAGAGAAATCACAGTATCATAGTGGAACTATACGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGACATTAGAGAAATCACAGTATCATAGTGGAACTATACGGTTA  150

seq1  ATCGTTGCTCCATAAGAGAGAAAGATACCGTCCCGGTAGCGTTTGGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTGCTCCATAAGAGAGAAAGATACCGTCCCGGTAGCGTTTGGCTGC  200

seq1  TCTGTTGTAAACTGTCATTAGTCCACAGGGATCTGCCAACAGCAACACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTAAACTGTCATTAGTCCACAGGGATCTGCCAACAGCAACACCC  250

seq1  ACTCTTTATGGCCTGAGTGTGTCCCTCCAAGTCTTGGTGCCCTTTCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTATGGCCTGAGTGTGTCCCTCCAAGTCTTGGTGCCCTTTCACCC  300

seq1  ATGAACACAGTCATAATCGCTGCCCGTGGCCTGTATTTATCTTGCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACAGTCATAATCGCTGCCCGTGGCCTGTATTTATCTTGCTTCTC  350

seq1  TCTCAGGCAGTTCAGAGCTGTGTTCTAGACTTTGCCCTATTAATGCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAGTTCAGAGCTGTGTTCTAGACTTTGCCCTATTAATGCCCTT  400

seq1  AGCCTCCCTGGGACAGGAGGCAGGGGCCAGGTGTTATTATCTCTATCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCTGGGACAGGAGGCAGGGGCCAGGTGTTATTATCTCTATCTAC  450

seq1  TTCACCACAAGGAAGATGGGGCTGACTGGGGGGGACATGAGCCTGTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACAAGGAAGATGGGGCTGACTGGGGGGGACATGAGCCTGTAGCT  500

seq1  TAGGACCTCTCCATGGGAAGGCAAAACACAGCTGCGGAGCTCTGTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTCTCCATGGGAAGGCAAAACACAGCTGCGGAGCTCTGTGGGCT  550

seq1  GGATCCTGTTGGGGATGTGTTACCCCGAATCCTGGCTGGAGAAACTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGTTGGGGATGTGTTACCCCGAATCCTGGCTGGAGAAACTAACA  600

seq1  AATGGCCTTTTAAAAAGTCAGCCTTTGAGAATTTAAGGTAGTCAAAACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTTTAAAAAGTCAGCCTTTGAGAATTTAAGGTAGTCAAAACGG  650

seq1  AATAGGCGTGTAGGTATTGCAAGGCATTGTGGGAACTTCACAGAAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCGTGTAGGTATTGCAAGGCATTGTGGGAACTTCACAGAAGGGAG  700

seq1  CTTCTGGAACTGGGGAGGGTCTGAGTGACTAGATGGCAGACTGGGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAACTGGGGAGGGTCTGAGTGACTAGATGGCAGACTGGGCAGCA  750

seq1  CAGGAAAGGGTTCTGAGTGAGCACGGACAATAAAGGATA-GGAATTCACC  799
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  CAGGAAAGGGTTCTGAGTGAGCACGGACAATAAAGGATAGGGAATTCATC  800

seq1  AATCCCAGAGATTTCATGGGAATGGAGAATGGAAGGTTGTCTTCCATGGG  849
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  AATCCTAGAGATTTCATGGGAATGGAGAATGGAAGGGTGTCTTCCATGGG  850

seq1  GCCTGGCTTTGTCTCTCCCTTTCTCTCATACTTGGCCCCTT-AGAGAGAC  898
      |||||||||||||||| |||||||||||||||||||||||| | ||||||
seq2  GCCTGGCTTTGTCTCTTCCTTTCTCTCATACTTGGCCCCTTAAAAGAGAC  900

seq1  AGTGCTGATGAGCATGGAGGAGGGTCTCCTGGGACCACAGATACCCTGAC  948
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AGTGCTGATGAGCATGGAGGAGGGTCTCCT-GGACCACAGAAACCCTGAC  949

seq1  ATGCCTACCCACTGCAGACTGGGCCTCTCCAGCCAGTGGGAGAGGTTGGG  998
      |||||||||||||||| ||||||| ||||||| |||||||| ||||||||
seq2  ATGCCTACCCACTGCAAACTGGGCTTCTCCAG-CAGTGGGAAAGGTTGGG  998