BAC Information

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BAC

Clone NameB6Ng01-142A21
Chromosome17 (Build37)
Map Location 20,686,959 - 20,687,896
singlet/doubletsinglet
Overlap geneEG627814
Upstream geneEG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5
Downstream geneEG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142A21.bB6Ng01-142A21.g
ACCDH940350DH940351
length9371,177
definitionDH940350|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A21, 5' end.DH940351|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaccattttcattgcctagtttattatggaatcctatggagaa
atgggaaagatttctttaaaacctgcttttacctgtctcattagaaattt
cattgtctgcacaaggagtgcaattgtagcagcagatggccttgccctcc
agggttacttttctgaaaccaggctcacagctcttactgcacacagcctg
agggatctgagaaaatgaaagtgatgttatctaaatcttatggttttatg
aaaataataaatagaatctttaatgttatacaatgaatttccgagtattt
ttctaaatacagaggattatttagaaagattatgtcctggagaaacaaat
gtatctaaggatttatctgagaagtatcaatgttagtgaatttgtataca
taataaggtatggacaagtttgagaaacttaggtgatagggaatagaaac
tgaaggaatgaccatccagagactaccccacctggtgatccatcccataa
acaaccaccaaacccagacactattgtagatgccaacaagattttgctga
caggagcctgatatagctgtctcctaagaggcactgccaatgcctggcaa
atacagaagtggatgctcacagccatccagtggatggggcacagggtccc
tgatgaaggagctagagaaagtccccaaggacctgaaggggaagctaaaa
gccccgtaggaggaacaacactatgaactaaccagtacaccaagagctcc
ctgggactaaaccaccaatcaaagaaaacacatggtggaactcatagctc
tagctgaatatgtagcagagaatcgcctagtcagtcatcaatgggaggaa
tgccccttggtcctgtgaaggtctatgcctcagtataggagaatgccagg
accaggaagcaggagtgggtgggttggtgagcagggg
gaattcatctgtatgttccttggctgtgataacccctatgcctagatttg
taccctggccagtgcaagctccatctgtgatgacactgtttagacctaaa
agagattttgagattaccgctgccatagtcacagcaatattgcacctcaa
ggaatgggctggcataggagggctggcattcatctgcattgccacaggag
taatggccctgtggtgcatttgccatatgcaaaaaaaggcatacccgtgc
acaggcactgttgattcaggcttttgcagcactagacctgggacaatctt
ctcaagtgtggcttggcatgctagagaagtagtcaatgactggtaagact
ccctggaggtgttaccaacctaagacagggaccagatccactgctgtctg
tcctcccgatgacaggtaaggagcattatcgcaggggacaacctaagaca
ggcattctctctgcctaaataataaataatgaggagatgtgaggagcggg
tgcagccgccgccccaagatggcacccgggacagctgccaggtcttatga
cctgcgcctgacttcctcactacctcagacttagccacatcccagctgca
tgcactgcacagatgccatgcttcgtcagctcgcctgaagtgtcatcact
tgttgtgaaccaatggactgccgttacgtgactggggtgattgggaggag
acagtagggtatttaaggcatgctccggggttgttcaggggattcctgtt
cctacattgcaatgtgtagtgttcctgaataaacctgcttgaagaaggac
aatgtggtgttgcgtctttcctgctggtcggggtggatgcgacagatgat
atattaaaagaaattgatatatcagtcaaacaaatgttaatgcaaataaa
gcatcttgacagaaaatatccaggagtctgatatacataaaaggacataa
actttcgaatataggaatagaagaagcgagagtctagctcaagtttcaga
aatatttcacaaatcatagagacactctccaacttagaagagaatcttta
acttcaggaattatagaacccattaatttgacaaaaaaaatctcctacac
ttatactagtaaaaggtcgatagagaattggagccgcagcataggccata
accgcacaagcgtggaccatatctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20686959_20687896
seq2: B6Ng01-142A21.b_50_986

seq1  GAATTCAGACCATTTTCATTGCCTAGTTTATTATGGAATCCTATGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCATTTTCATTGCCTAGTTTATTATGGAATCCTATGGAGAA  50

seq1  ATGGGAAAGATTTCTTTAAAACCTGCTTTTACCTGTCTCATTAGAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGATTTCTTTAAAACCTGCTTTTACCTGTCTCATTAGAAATTT  100

seq1  CATTGTCTGCACAAGGAGTGCAATTGTAGCAGCAGATGGCCTTGCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGCACAAGGAGTGCAATTGTAGCAGCAGATGGCCTTGCCCTCC  150

seq1  AGGGTTACTTTTCTGAAACCAGGCTCACAGCTCTTACTGCACACAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACTTTTCTGAAACCAGGCTCACAGCTCTTACTGCACACAGCCTG  200

seq1  AGGGATCTGAGAAAATGAAAGTGATGTTATCTAAATCTTATGGTTTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTGAGAAAATGAAAGTGATGTTATCTAAATCTTATGGTTTTATG  250

seq1  AAAATAATAAATAGAATCTTTAATGTTATACAATGAATTTCCGAGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAATAGAATCTTTAATGTTATACAATGAATTTCCGAGTATTT  300

seq1  TTCTAAATACAGAGGATTATTTAGAAAGATTATGTCCTGGAGAAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATACAGAGGATTATTTAGAAAGATTATGTCCTGGAGAAACAAAT  350

seq1  GTATCTAAGGATTTATCTGAGAAGTATCAATGTTAGTGAATTTGTATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAAGGATTTATCTGAGAAGTATCAATGTTAGTGAATTTGTATACA  400

seq1  TAATAAGGTATGGACAAGTTTGAGAAACTTAGGTGATAGGGAATAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGTATGGACAAGTTTGAGAAACTTAGGTGATAGGGAATAGAAAC  450

seq1  TGAAGGAATGACCATCCAGAGACTACCCCACCTGGTGATCCATCCCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAATGACCATCCAGAGACTACCCCACCTGGTGATCCATCCCATAA  500

seq1  ACAACCACCAAACCCAGACACTATTGTAGATGCCAACAAGATTTTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACCAAACCCAGACACTATTGTAGATGCCAACAAGATTTTGCTGA  550

seq1  CAGGAGCCTGATATAGCTGTCTCCTAAGAGGCACTGCCAATGCCTGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCTGATATAGCTGTCTCCTAAGAGGCACTGCCAATGCCTGGCAA  600

seq1  ATACAGAAGTGGATGCTCACAGCCATCCAGTGGATGGGGCACAGGGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGTGGATGCTCACAGCCATCCAGTGGATGGGGCACAGGGTCCC  650

seq1  TGATGAAGGAGCTAGAGAAAGTCCCCAAGGACCTGAAGGGGAAGCTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGGAGCTAGAGAAAGTCCCCAAGGACCTGAAGGGGAAGCTAAAA  700

seq1  GCCCCGTAGGAGGAACAACACTATGAACTAACCAGTACACCAAGAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTAGGAGGAACAACACTATGAACTAACCAGTACACCAAGAGCTCC  750

seq1  CTGGGACTAAACCACCAATCAAAGAAAACACATGGTGGAACTCATAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTAAACCACCAATCAAAGAAAACACATGGTGGAACTCATAGCTC  800

seq1  TAGCTGAATATGTAGCAGAGAATCGCCTAGTCAGTCATCAATGGGAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATATGTAGCAGAGAATCGCCTAGTCAGTCATCAATGGGAGGAA  850

seq1  TGCCCCTTGGTCCTGTGAAGGTTCTATGCCTCAGTATAGGAGAATGCCAG  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCCCCTTGGTCCTGTGAAGG-TCTATGCCTCAGTATAGGAGAATGCCAG  899

seq1  GACCAGGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGG  938
      ||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGG  937