BAC Information

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BAC

Clone NameB6Ng01-142E17
Chromosome17 (Build37)5 (Build37)
Map Location 77,090,307 - 77,091,42818,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043885, LOC100043886
Downstream geneEG624348, LOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E17.bB6Ng01-142E17.g
ACCDH940526DH940527
length1,104855
definitionDH940526|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E17, 5' end.DH940527|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,090,307 - 77,091,428)(18,084,511 - 18,084,575)
sequence
gaattctattttaacttactctatcctatgtgttcactatgtggtatttt
aggaaaacagccctcatacagtgtgaataatgtcagagttttcacactat
tagtattcaggctttgggctagggaacaaagttgccagcagacttgaaga
tgtgtttagaatacattctgtgttaaaagccctttcagtgattcaaacta
cagacgatttttacttttattaagctagaaaaattggaaaggaaagatgg
ccagttttcctttgggtaggaggggatgtcttaatatctttactgagaat
caaaatgttaggtgtatgcaaatttgcccttttacaatatgaaccaatgt
gtccatctccacacaaagagaggagaaaggcaatcccaaggtcaggtttc
caaaacactctattgtacaatggcaattcactgacctttgtgaaataaag
atatattaagttgaaactgatttgtttactctccagtcatgttatcctgc
tatccatacagatcaatgaagtataaagaaaaagaagaaagaaaagaaaa
agaaatatattagagacaaattcaactgtttaaaagtccaatttctctta
ctatatacctaatgttaatatctgaatagtttatttttgctttttagtct
tttcttggacattaatgacagaagtattataatcgtttgagggaaatatc
attaaggaggaaagttatatgttttcctaacatcttttagaaactaataa
tttgggggcagtttgaaaacattgagacaagaaatgcattgcataaataa
atcattgtggtcttgttgttaaaattgtgagaaattcagaagtatatatt
gtatgacaagttaaaccacttcttaagtctggttaatatactttcactaa
aaccacaggtacgaaataggggattttcgggatagtatttgaaatgtaaa
gaggaaaatactatttaaaaaatggaaaaaaaagaacaggatacgaattt
taaattacctaaaagaaattttggaaataagaatatctgttccacaaaca
ctttaataaaagaaaaatagattgtcactattgaggcttcagatagatgc
attc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaaaaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgccagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagataccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagacagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatgtgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatttagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77090307_77091428
seq2: B6Ng01-142E17.b_51_1154 (reverse)

seq1  GAATGCAATCTATCCTGAAGCCTCATTAGTAGACAATACTTATTTTTTCT  50
      |||||| |||||| ||||||||||| |||| |||||| ||   |||||||
seq2  GAATGC-ATCTAT-CTGAAGCCTCAATAGT-GACAAT-CT--ATTTTTCT  44

seq1  TTTTATTTAAAGTGTTTGTGGTACAGATATTCTTATTT-CAAAATATCTT  99
      |||   ||||||||||||||| |||||||||||||||| |||||| || |
seq2  TTT--ATTAAAGTGTTTGTGGAACAGATATTCTTATTTCCAAAATTTC-T  91

seq1  TTTAGGTTAATTTAAAAATCTGTATCCTGTTTCTTTTTTTTTCCATTTTT  149
      |||||| |||||||||| || ||||||||||   ||||||||||| ||||
seq2  TTTAGG-TAATTTAAAATTC-GTATCCTGTT--CTTTTTTTTCCA-TTTT  136

seq1  TTAAATTAGGTATTTTCTTCTTTTACATTTCAAATACTATCCCGAAAATC  199
      ||||||   |||||||| || |||||||||||||||||||||||||||||
seq2  TTAAAT--AGTATTTTCCTC-TTTACATTTCAAATACTATCCCGAAAATC  183

seq1  CCCTATTTCGTAACCTGTGGTTTTAGTGAAAGTATATTAACCAGACTTAA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTCGT-ACCTGTGGTTTTAGTGAAAGTATATTAACCAGACTTAA  232

seq1  GAAGTGGTTTTAACTTGTCATACAATATATACTTCTGAATTTCTCACAAT  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGG-TTTAACTTGTCATACAATATATACTTCTGAATTTCTCACAAT  281

seq1  TTTAACAACAAGACCACAATGATTTATTTATGCAATGCATTTCTTGTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAACAAGACCACAATGATTTATTTATGCAATGCATTTCTTGTCTC  331

seq1  AATGTTTTCAAACTGCCCCCAAATTATTAGTTTCTAAAAGATGTTAGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCAAACTGCCCCCAAATTATTAGTTTCTAAAAGATGTTAGGAA  381

seq1  AACATATAACTTTCCTCCTTAATGATATTTCCCTCAAACGATTATAATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAACTTTCCTCCTTAATGATATTTCCCTCAAACGATTATAATAC  431

seq1  TTCTGTCATTAATGTCCAAGAAAAGACTAAAAAGCAAAAATAAACTATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCATTAATGTCCAAGAAAAGACTAAAAAGCAAAAATAAACTATTC  481

seq1  AGATATTAACATTAGGTATATAGTAAGAGAAATTGGACTTTTAAACAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAACATTAGGTATATAGTAAGAGAAATTGGACTTTTAAACAGTT  531

seq1  GAATTTGTCTCTAATATATTTCTTTTTCTTTTCTTTCTTCTTTTTCTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCTCTAATATATTTCTTTTTCTTTTCTTTCTTCTTTTTCTTTA  581

seq1  TACTTCATTGATCTGTATGGATAGCAGGATAACATGACTGGAGAGTAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCATTGATCTGTATGGATAGCAGGATAACATGACTGGAGAGTAAAC  631

seq1  AAATCAGTTTCAACTTAATATATCTTTATTTCACAAAGGTCAGTGAATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTTTCAACTTAATATATCTTTATTTCACAAAGGTCAGTGAATTG  681

seq1  CCATTGTACAATAGAGTGTTTTGGAAACCTGACCTTGGGATTGCCTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTACAATAGAGTGTTTTGGAAACCTGACCTTGGGATTGCCTTTCT  731

seq1  CCTCTCTTTGTGTGGAGATGGACACATTGGTTCATATTGTAAAAGGGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTGTGTGGAGATGGACACATTGGTTCATATTGTAAAAGGGCAA  781

seq1  ATTTGCATACACCTAACATTTTGATTCTCAGTAAAGATATTAAGACATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATACACCTAACATTTTGATTCTCAGTAAAGATATTAAGACATCC  831

seq1  CCTCCTACCCAAAGGAAAACTGGCCATCTTTCCTTTCCAATTTTTCTAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACCCAAAGGAAAACTGGCCATCTTTCCTTTCCAATTTTTCTAGC  881

seq1  TTAATAAAAGTAAAAATCGTCTGTAGTTTGAATCACTGAAAGGGCTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAGTAAAAATCGTCTGTAGTTTGAATCACTGAAAGGGCTTTTA  931

seq1  ACACAGAATGTATTCTAAACACATCTTCAAGTCTGCTGGCAACTTTGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATGTATTCTAAACACATCTTCAAGTCTGCTGGCAACTTTGTTC  981

seq1  CCTAGCCCAAAGCCTGAATACTAATAGTGTGAAAACTCTGACATTATTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCCAAAGCCTGAATACTAATAGTGTGAAAACTCTGACATTATTCA  1031

seq1  CACTGTATGAGGGCTGTTTTCCTAAAATACCACATAGTGAACACATAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATGAGGGCTGTTTTCCTAAAATACCACATAGTGAACACATAGGA  1081

seq1  TAGAGTAAGTTAAAATAGAATTC  1122
      |||||||||||||||||||||||
seq2  TAGAGTAAGTTAAAATAGAATTC  1104

seq1: chr5_18084511_18084575
seq2: B6Ng01-142E17.g_383_447 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65